genome.fa.s2974.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002974.1 Hibiscus syriacus cultivar Beakdansim tig00006150_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73722

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3077--3190	57	2.0	57	94	0	201	35	14	15	34	1.89
6347--6420	34	2.2	35	85	9	109	43	5	4	47	1.45
6391--6434	21	2.0	22	91	8	72	36	4	0	59	1.18
9737--9808	31	2.4	28	80	17	67	41	0	0	58	0.98
9786--9824	17	2.3	17	90	0	60	35	0	2	61	1.10
9951--10004	17	3.2	16	78	2	54	37	0	3	59	1.15
19517--19613	2	54.0	2	75	20	81	43	0	0	56	0.99
19515--19613	31	3.3	31	86	10	136	43	0	0	56	0.99
19517--19613	10	9.5	11	80	10	102	43	0	0	56	0.99
23738--23766	7	4.1	7	100	0	58	13	13	13	58	1.63
25657--25745	38	2.3	39	90	1	135	25	5	23	44	1.75
26599--26672	24	3.1	22	75	17	60	28	5	0	66	1.14
26633--26672	14	2.7	14	84	7	53	32	2	0	65	1.06
26583--26663	20	4.0	20	71	20	62	29	3	0	66	1.09
26682--26715	2	17.0	2	93	0	59	47	0	2	50	1.16
26992--27026	18	2.0	18	88	5	54	14	14	0	71	1.15
31710--31847	69	2.0	69	95	0	249	37	22	14	25	1.92
33351--33674	106	3.1	106	86	0	441	34	22	18	23	1.96
33902--34059	65	2.4	65	81	2	192	28	18	12	40	1.87
33821--34341	167	3.1	167	95	0	898	28	18	13	40	1.87
33970--34153	102	1.8	102	84	2	253	26	17	13	42	1.87
34072--34218	65	2.3	65	85	4	190	27	19	12	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34121--34503	102	3.8	101	84	4	439	28	18	13	39	1.88
34302--34374	37	2.0	37	83	5	94	26	19	13	41	1.88
33876--34439	167	3.4	166	80	13	590	28	18	13	39	1.88
34541--34638	36	2.8	36	87	3	128	21	19	16	42	1.89
34658--34740	35	2.4	34	94	4	141	39	19	8	32	1.81
34748--34905	84	1.9	85	84	4	212	30	21	19	28	1.98
35959--36060	25	4.2	22	74	17	62	33	4	0	60	1.24
36017--36081	2	33.0	2	83	9	80	43	3	3	50	1.33
35998--36081	16	5.6	15	77	17	70	41	2	2	53	1.27
36111--36188	39	2.1	36	88	7	111	26	5	2	65	1.27
36186--36236	16	2.9	17	80	11	59	27	3	0	68	1.07
36337--36381	18	2.6	17	83	13	56	15	13	0	71	1.15
36335--36381	17	2.7	17	81	12	60	14	12	0	72	1.13
37313--37414	52	1.9	53	86	9	147	53	15	1	28	1.53
38962--39038	18	4.2	18	86	3	109	44	16	5	33	1.70
40509--40566	18	3.2	18	85	7	82	41	15	34	8	1.78
43560--43692	60	2.2	61	80	9	148	33	21	4	39	1.74
43836--44007	60	2.9	60	78	6	179	38	5	21	34	1.76
44944--45054	46	2.4	46	92	4	179	11	10	14	63	1.53
57012--57077	23	2.8	24	81	4	80	13	13	45	27	1.81
57012--57059	12	4.1	12	89	2	71	10	12	45	31	1.76
57075--57139	24	2.6	25	79	16	73	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57169--57213	13	3.5	13	90	3	65	13	11	53	22	1.71
57177--57217	13	3.2	13	93	3	66	12	12	58	17	1.63
58421--58527	42	2.5	42	83	0	133	21	6	11	60	1.52
58704--58734	14	2.1	15	94	5	55	51	0	0	48	1.00
58711--58774	22	2.8	24	81	11	71	45	0	0	54	0.99
58763--58837	33	2.3	32	82	8	82	50	1	1	46	1.18
58801--58878	24	3.1	25	82	17	76	43	0	2	53	1.14
58825--58891	26	2.4	29	81	16	88	46	0	1	52	1.09
59216--59264	20	2.3	21	89	6	73	34	18	12	34	1.88
59229--59273	20	2.2	20	84	0	54	35	20	6	37	1.79
59247--59313	15	4.5	15	79	3	73	32	17	10	38	1.84
59247--59319	30	2.5	30	93	2	121	30	19	9	41	1.83
71035--71079	21	2.2	21	92	4	74	37	2	0	60	1.09
73321--73363	18	2.3	19	80	15	54	53	2	0	44	1.13
73413--73447	18	1.9	18	100	0	70	34	0	22	42	1.54

Tables:   1

The End!