genome.fa.s2978.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002978.1 Hibiscus syriacus cultivar Beakdansim tig00006157_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56596

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10939--11068	60	2.2	60	83	5	165	31	28	3	36	1.75
11190--11378	60	3.2	57	75	10	164	39	6	22	31	1.79
11675--11699	2	12.5	2	100	0	50	52	0	0	48	1.00
14957--15007	25	2.0	25	100	0	102	19	11	15	52	1.73
15552--15801	20	12.5	20	81	6	229	37	24	17	20	1.93
16484--16530	24	2.0	24	87	8	69	25	14	21	38	1.92
16705--16729	12	2.1	12	100	0	50	72	0	28	0	0.86
19057--19173	19	6.4	19	87	10	181	14	22	17	46	1.84
19076--19173	33	2.8	35	86	11	146	15	21	17	45	1.84
19038--19155	53	2.2	53	98	1	229	13	23	17	44	1.85
19232--19347	19	6.6	19	73	19	108	42	18	24	15	1.88
19232--19347	52	2.2	52	93	1	196	42	18	24	15	1.88
19354--19453	19	5.5	19	84	12	147	15	23	17	45	1.85
19337--19453	53	2.2	53	95	1	209	14	24	17	43	1.86
19559--19595	14	2.6	14	91	0	65	45	21	0	32	1.52
21574--21630	14	3.7	14	77	20	60	45	22	21	10	1.82
21555--21643	33	2.7	33	94	0	160	47	21	20	11	1.81
21518--21643	19	7.1	19	76	17	119	46	23	18	11	1.81
21648--21776	19	7.3	19	75	17	125	8	17	28	45	1.77
21648--21739	33	2.8	33	93	3	150	7	18	28	45	1.76
21820--22199	93	4.1	93	98	0	735	45	18	12	22	1.83
23960--24016	14	3.7	14	75	20	60	8	24	22	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23944--24024	33	2.5	33	95	0	144	8	22	22	46	1.78
24000--24056	21	2.8	20	86	5	78	12	28	17	42	1.85
24135--24205	33	2.2	33	89	0	106	47	16	23	11	1.79
24587--24740	20	7.7	20	83	4	211	20	20	25	33	1.97
24589--24760	60	2.8	60	84	4	220	20	19	25	35	1.95
24587--24760	40	4.3	40	82	4	190	20	19	25	35	1.96
32143--32192	20	2.5	20	83	3	66	42	0	12	46	1.41
32663--32688	2	13.0	2	100	0	52	50	0	0	50	1.00
53620--53874	117	2.2	114	83	4	307	40	11	15	32	1.83

Tables:   1

The End!