genome.fa.s2979.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002979.1 Hibiscus syriacus cultivar Beakdansim tig00006161_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  127012

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
527--584	31	1.9	31	86	13	86	46	0	0	53	1.00
10786--10859	22	3.3	21	70	20	60	31	1	2	64	1.15
10992--11052	31	2.0	30	83	3	77	27	21	8	42	1.81
11303--11331	13	2.2	13	100	0	58	27	0	24	48	1.51
15389--15492	33	3.2	33	90	1	156	21	18	27	32	1.96
15425--15475	17	3.1	17	67	16	52	19	21	27	31	1.97
15414--15464	16	3.1	16	68	15	50	23	15	33	27	1.95
17942--18332	78	5.1	78	69	7	336	32	19	22	25	1.97
18012--18392	78	5.0	75	70	5	284	32	18	22	25	1.97
17921--18435	153	3.4	153	92	1	831	32	19	22	26	1.97
18171--18407	75	3.1	75	69	7	208	33	18	21	25	1.96
19667--20007	168	2.0	168	93	0	574	33	19	22	24	1.97
24071--24116	2	23.0	2	100	0	92	50	0	0	50	1.00
25513--25538	2	13.0	2	100	0	52	50	0	0	50	1.00
26125--26166	8	5.1	8	78	16	50	66	0	2	30	1.04
27956--28013	31	1.9	31	82	3	73	29	15	8	46	1.75
37562--37639	33	2.4	33	97	0	147	35	2	12	48	1.55
38676--38709	15	2.3	15	94	0	59	5	17	67	8	1.37
39043--39111	34	2.0	34	97	0	129	17	21	23	37	1.94
46715--46775	3	20.3	3	83	12	81	34	0	1	63	1.04
46715--46772	13	4.5	13	82	8	75	34	0	1	63	1.04
46717--46774	16	3.9	15	78	21	68	34	0	1	63	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57562--57606	20	2.4	18	82	13	63	20	26	6	46	1.75
57572--57618	20	2.3	20	96	0	85	27	23	4	44	1.72
57782--57812	15	2.1	15	100	0	62	25	32	6	35	1.82
60597--60905	55	5.7	55	82	7	276	28	23	18	28	1.98
60594--60905	110	2.9	109	81	7	350	28	24	18	28	1.98
62152--62319	17	9.3	17	69	17	81	8	16	1	73	1.15
62155--62311	20	8.1	19	70	21	78	9	17	1	71	1.18
62144--62301	7	19.6	8	75	18	102	10	15	1	72	1.17
73858--73948	47	1.9	48	86	4	132	40	21	9	27	1.85
73858--73970	47	2.4	47	81	10	131	42	20	10	26	1.84
77069--77097	2	14.5	2	100	0	58	48	0	0	51	1.00
81091--81515	212	2.0	212	100	0	850	24	19	19	36	1.94
81927--82041	60	1.9	60	94	0	203	21	13	17	46	1.83
92391--92443	20	2.7	20	90	0	79	32	22	1	43	1.64
95859--95893	17	2.0	18	94	5	63	48	5	0	45	1.26
99615--99673	28	2.1	29	87	3	84	15	8	15	61	1.56
100552--100602	2	25.5	2	100	0	102	50	0	0	49	1.00
102757--102794	20	1.9	20	100	0	76	36	10	28	23	1.88
102905--102977	35	2.0	37	87	10	107	49	5	0	45	1.25
106410--106457	25	1.9	25	86	0	69	45	12	12	29	1.78
106770--106800	2	15.5	2	100	0	62	51	0	0	48	1.00
107230--107265	18	2.0	18	100	0	72	44	27	16	11	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107342--107405	27	2.3	28	81	2	76	39	4	0	56	1.20
107592--107624	16	2.0	17	88	5	50	36	6	0	57	1.23
108553--108593	2	20.5	2	100	0	82	51	0	0	48	1.00
109262--109302	20	2.0	20	86	9	57	39	9	7	43	1.65
112607--112664	24	2.4	25	75	13	59	27	1	5	65	1.23
114038--114079	19	2.2	19	100	0	84	42	16	26	14	1.86
115923--115959	2	19.0	2	94	5	67	51	0	0	48	1.00
116075--116142	24	2.8	23	80	10	82	51	1	1	45	1.19
116420--116467	21	2.3	20	86	10	69	72	8	0	18	1.08
116703--116770	7	10.1	7	74	15	54	38	1	0	60	1.06
116689--116753	26	2.5	26	85	12	80	30	1	1	66	1.10
116703--116747	13	3.3	14	78	15	58	35	0	0	64	0.94
116704--116750	22	2.2	22	88	7	71	34	0	0	65	0.93
121514--121575	21	3.0	20	76	4	61	33	14	17	33	1.90
121562--121608	21	2.2	21	92	0	76	38	6	17	38	1.75
126807--126867	27	2.3	27	94	5	106	39	11	19	29	1.87

Tables:   1

The End!