genome.fa.s298.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000298.1 Hibiscus syriacus cultivar Beakdansim tig00000549_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98314

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6022--6067	14	3.4	14	82	8	51	76	0	4	19	0.96
6150--6261	12	10.1	11	68	15	54	67	1	3	26	1.16
6148--6203	16	3.3	16	80	16	60	73	0	1	25	0.93
6112--6245	17	7.8	15	70	22	63	68	3	4	23	1.24
6338--6377	16	2.4	18	80	16	50	65	0	7	27	1.20
6372--6407	2	18.5	2	94	5	65	52	0	0	47	1.00
7527--7752	106	2.1	106	86	1	328	22	19	24	33	1.97
7537--7780	106	2.3	105	85	5	321	22	19	25	32	1.97
7945--8020	36	2.1	36	90	0	116	40	15	21	22	1.90
7920--8233	103	3.1	103	91	3	503	35	12	20	31	1.89
8347--8458	36	3.2	36	74	7	122	43	14	16	25	1.85
8362--8471	34	3.1	36	74	10	120	43	10	17	28	1.82
8334--8469	70	1.9	71	88	7	206	39	13	17	28	1.88
9597--10119	182	2.9	180	91	5	843	30	21	20	27	1.98
13605--13641	19	1.9	19	89	10	58	67	0	24	8	1.17
14903--14969	29	2.5	27	85	9	84	70	0	2	26	1.02
14903--14969	25	2.5	26	81	13	66	70	0	2	26	1.02
14878--15071	28	7.6	26	66	23	67	65	3	4	26	1.27
22078--22112	14	2.5	14	90	0	52	25	11	5	57	1.56
22076--22148	24	3.0	24	83	0	92	19	12	12	56	1.67
22409--22438	14	2.1	14	93	0	51	16	13	10	60	1.59
22315--22441	24	5.4	24	76	2	96	14	13	14	56	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25371--25426	18	3.1	18	75	14	69	50	0	0	50	1.00
25371--25450	37	2.1	39	93	4	137	45	1	1	52	1.16
26348--26393	6	7.7	6	97	0	65	41	0	58	0	0.98
27276--27479	101	2.0	101	97	0	381	28	12	21	37	1.90
27722--27808	42	2.0	43	82	6	106	39	1	12	47	1.49
29901--29959	31	1.9	31	82	6	75	40	5	11	42	1.64
33313--33348	18	2.0	18	94	0	63	33	5	19	41	1.75
38416--38485	31	2.3	31	85	5	97	28	20	12	38	1.89
41696--41757	18	3.2	20	78	19	62	61	0	1	37	1.06
41767--41856	14	6.9	13	70	24	57	54	1	0	44	1.07
41752--41908	63	2.5	65	87	8	236	55	1	0	42	1.15
41805--41911	12	8.7	12	70	19	69	57	1	0	39	1.16
41807--41888	24	3.2	26	80	13	91	54	1	1	42	1.15
42274--42317	17	2.5	17	81	7	52	40	4	6	47	1.50
44180--44335	63	2.5	63	80	0	159	30	18	23	27	1.98
45620--45756	31	4.4	31	74	12	104	28	15	19	36	1.92
45620--45756	63	2.2	61	82	6	159	28	15	19	36	1.92
45941--45973	13	2.4	14	90	5	50	27	0	21	51	1.48
59015--59062	25	1.9	25	82	0	60	39	0	14	45	1.45
60501--60564	24	2.7	24	92	7	105	50	12	14	23	1.76
60753--60821	28	2.4	28	85	7	93	30	2	1	65	1.16
60732--60907	31	5.8	31	72	15	93	34	7	1	56	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60753--61188	30	14.7	29	66	18	139	36	7	2	53	1.41
61278--61375	29	3.3	29	86	2	133	52	0	5	42	1.23
61278--61404	29	4.2	29	81	4	128	54	0	3	41	1.19
61278--61404	60	2.1	60	85	5	168	54	0	3	41	1.19
61452--61524	29	2.4	31	84	6	96	50	0	1	47	1.09
61550--61581	2	16.0	2	100	0	64	50	0	0	50	1.00
62394--62465	21	3.4	21	86	7	101	31	16	20	30	1.95
64286--64363	30	2.6	30	95	2	138	61	0	5	33	1.18
67500--67574	37	2.1	36	85	7	98	46	2	0	50	1.15
72401--72445	21	2.1	21	95	0	81	51	20	6	22	1.70
72655--72707	22	2.4	22	93	0	97	28	22	7	41	1.81
74302--74344	17	2.5	17	84	3	50	34	9	11	44	1.73
78258--78306	24	2.0	24	100	0	98	20	0	8	71	1.11
80579--80609	16	1.9	16	100	0	62	25	25	25	22	2.00
80630--80669	21	1.9	21	84	0	53	20	20	27	32	1.97
81202--81266	24	2.8	23	86	6	78	30	27	26	15	1.96
88679--88713	15	2.3	15	100	0	70	20	11	34	34	1.88
97167--97206	20	2.0	20	90	0	62	35	22	10	32	1.87
97598--97634	17	2.1	19	85	10	51	64	2	0	32	1.07

Tables:   1

The End!