genome.fa.s2980.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002980.1 Hibiscus syriacus cultivar Beakdansim tig00006162_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95223

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7280--7314	15	2.3	15	85	0	52	37	0	54	8	1.31
12619--12679	27	2.3	27	97	0	113	32	4	36	26	1.78
15653--15699	18	2.7	18	80	6	53	61	8	4	25	1.43
15916--16262	115	3.0	115	96	0	633	29	15	15	38	1.89
18716--18758	18	2.4	18	84	3	61	60	11	2	25	1.43
19753--19857	37	2.8	37	83	0	129	42	14	13	29	1.83
20213--20353	63	2.2	65	81	9	173	31	2	2	63	1.21
20520--20546	11	2.5	11	100	0	54	0	0	7	92	0.38
20701--20776	38	2.1	38	83	14	97	31	5	7	55	1.51
24845--25381	183	2.9	183	97	0	995	27	21	21	30	1.98
26563--26678	36	3.1	36	71	3	97	28	17	15	38	1.90
26522--26682	72	2.2	76	85	7	217	28	18	13	40	1.87
26540--26703	72	2.3	71	82	8	172	28	15	14	41	1.86
26710--26862	39	3.6	39	67	21	110	27	21	13	37	1.91
26765--27084	106	3.1	103	90	3	482	30	20	12	36	1.89
26984--27059	36	2.1	36	87	0	107	25	19	15	39	1.91
27259--27889	105	6.0	105	88	2	860	34	26	17	22	1.95
31487--31533	23	2.0	23	91	0	76	38	23	6	31	1.80
31489--31567	23	3.4	23	74	5	70	37	17	6	37	1.76
31538--31621	34	2.4	34	92	2	141	33	13	13	40	1.82
36051--36365	149	2.1	149	96	0	576	34	21	16	27	1.94
37830--37874	21	2.1	21	87	0	63	15	24	28	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41139--41183	23	2.0	23	90	0	72	24	26	26	22	2.00
41151--41465	149	2.1	149	95	2	562	34	21	16	27	1.95
42930--42974	21	2.1	21	87	0	63	15	24	28	31	1.96
43728--43837	37	3.0	37	90	0	166	41	12	14	30	1.83
44223--44261	14	2.7	15	88	4	53	28	0	0	71	0.86
44422--44518	28	3.5	28	75	20	89	25	2	2	70	1.09
44450--44493	20	2.2	20	84	8	54	25	2	0	72	0.96
44442--44550	28	3.9	26	75	16	78	20	3	1	74	1.07
53893--53969	23	3.3	23	80	8	86	9	14	19	57	1.64
53913--53953	13	3.3	13	73	13	50	4	14	21	58	1.55
54990--55376	183	2.1	183	91	2	627	45	8	2	43	1.47
58450--58489	20	2.0	20	90	0	62	55	0	0	45	0.99
65208--65251	21	2.1	21	83	8	54	18	4	11	65	1.40
65223--65250	11	2.5	11	100	0	56	14	0	7	78	0.95
74954--74996	21	2.0	21	90	0	68	46	0	2	51	1.13
84547--84585	15	2.6	16	76	16	55	53	7	0	38	1.30
84556--84589	14	2.4	14	90	9	52	55	5	0	38	1.24
86027--86098	30	2.4	30	86	2	92	33	30	19	16	1.94
86838--86895	20	2.6	22	86	10	75	25	22	22	29	1.99
86872--87023	64	2.4	64	78	11	170	26	23	15	35	1.94
89934--90006	30	2.5	30	80	6	78	36	31	16	15	1.90
90735--90792	20	2.6	22	86	10	75	25	22	22	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90780--90920	64	2.2	63	80	7	151	26	23	17	33	1.96

Tables:   1

The End!