Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002981.1 Hibiscus syriacus cultivar Beakdansim tig00006165_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125403

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8782--8807
2
13.0
2
100
0
52
50
0
0
50
1.00
9884--9912
11
2.6
11
100
0
58
13
27
20
37
1.91
12490--12550
31
2.0
31
86
0
86
39
6
8
45
1.60
18546--18664
24
5.2
22
73
16
66
59
14
13
12
1.61
18567--18645
23
3.4
22
75
8
68
60
15
12
11
1.58
18708--18747
21
1.9
22
85
10
57
25
0
7
67
1.16
30235--30267
17
1.9
17
93
0
57
54
6
0
39
1.25
30635--30700
22
3.0
22
95
0
123
34
18
27
19
1.95
30734--30783
21
2.4
21
100
0
100
26
14
4
56
1.56
35142--35181
20
2.0
20
90
0
62
20
15
20
45
1.86
35226--35271
12
3.6
12
81
16
56
45
17
19
17
1.85
35232--35272
12
3.1
13
80
19
57
46
14
17
21
1.84
37611--37709
33
3.0
33
92
1
155
32
6
15
46
1.70
37695--37749
13
4.2
13
75
13
58
34
3
12
49
1.59
37945--38001
21
2.7
21
91
0
96
19
26
26
28
1.99
38168--38222
15
3.5
15
78
9
65
32
12
10
43
1.78
38187--38220
18
1.9
18
94
5
61
38
11
11
38
1.79
38314--38345
16
2.0
17
88
11
50
43
21
21
12
1.86
42329--42398
31
2.3
31
85
5
88
30
22
8
38
1.84
42342--42402
31
2.0
31
90
6
97
27
21
9
40
1.85
47379--47439
30
2.0
30
100
0
122
29
31
6
32
1.83
46911--47953
538
1.9
538
96
1
1944
32
12
13
41
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47738--47780
7
5.9
7
91
2
59
32
0
2
65
1.06
51209--51248
21
1.9
21
89
0
62
10
25
40
25
1.86
57205--57352
47
3.1
47
88
0
233
20
16
20
42
1.89
68692--68747
18
2.9
19
85
12
71
48
8
21
21
1.77
74319--74366
20
2.4
20
96
0
87
20
25
22
31
1.98
76827--76885
19
3.3
19
63
18
54
45
13
6
33
1.70
76812--76952
34
4.2
33
79
19
148
48
12
5
33
1.65
76902--76931
16
1.9
15
93
6
51
56
6
0
36
1.26
77686--77750
31
2.1
31
82
0
76
44
9
4
41
1.57
78156--78193
16
2.4
16
86
4
51
60
0
2
36
1.11
89371--89404
2
17.0
2
100
0
68
50
0
0
50
1.00
94190--94271
40
2.0
41
85
2
112
39
14
18
28
1.90
103417--103475
25
2.4
25
97
0
109
49
10
8
32
1.67
105107--105159
26
2.0
26
100
0
106
41
15
3
39
1.65
107149--107192
21
2.2
20
83
4
52
36
0
2
61
1.09
107191--107271
30
2.7
29
77
7
81
23
11
9
55
1.64

Tables:   1

The End!