Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002983.1 Hibiscus syriacus cultivar Beakdansim tig00006172_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  138081

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18260--18374
57
2.0
57
98
0
221
32
28
18
20
1.96
20911--20953
21
2.0
21
81
0
50
30
25
25
18
1.98
21364--21434
30
2.3
31
90
2
108
39
2
23
33
1.70
21625--21681
25
2.3
25
91
8
91
22
29
22
24
1.99
34282--34740
228
2.0
229
99
0
911
26
12
33
27
1.92
52750--52795
21
2.2
21
88
0
65
30
28
26
15
1.96
54419--54484
22
3.0
22
95
4
125
18
27
27
27
1.98
54420--54486
21
3.1
21
97
2
125
16
26
26
29
1.97
57602--57648
21
2.2
22
80
7
60
29
27
27
14
1.96
58232--58266
18
1.9
18
88
11
54
54
5
17
22
1.64
59281--59347
22
3.0
22
100
0
134
19
26
26
26
1.99
96712--96754
20
2.2
20
86
0
59
32
13
20
32
1.92
100595--100659
22
3.0
22
100
0
130
27
27
26
18
1.98
101675--101708
18
1.9
18
88
5
52
23
17
5
52
1.66
102292--102334
21
2.0
21
86
0
59
16
27
27
27
1.97
105457--105523
22
3.0
22
100
0
134
26
26
26
19
1.99
106058--106097
21
2.0
20
85
5
53
42
22
2
32
1.67
106530--106564
18
1.9
18
88
11
54
22
17
5
54
1.64
107146--107188
21
2.0
21
86
0
59
16
27
27
27
1.97
112584--112756
90
1.9
89
91
1
283
45
7
9
38
1.65
113172--113213
20
2.1
20
86
0
57
33
11
21
33
1.90
113567--113604
18
2.1
18
90
0
58
18
44
18
18
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
114726--114769
20
2.1
20
83
8
52
25
29
2
43
1.67
115236--115289
20
2.7
20
91
5
83
46
5
5
42
1.50
130736--130760
3
8.3
3
100
0
50
32
68
0
0
0.90

Tables:   1

The End!