Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002984.1 Hibiscus syriacus cultivar Beakdansim tig00006173_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 87108
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Found at i:1521 original size:16 final size:14
Alignment explanation
Indices: 1498--1537 Score: 53
Period size: 16 Copynumber: 2.7 Consensus size: 14
1488 GTTTTTTCAG
1498 TTCGGTTCGGGTTT
1 TTCGGTTCGGGTTT
*
1512 TTAACGGTTCGAGTTT
1 TT--CGGTTCGGGTTT
1528 TTCGGTTCGG
1 TTCGGTTCGG
1538 TTCGGTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 9 0.41
16 13 0.59
ACGTcount: A:0.07, C:0.15, G:0.33, T:0.45
Consensus pattern (14 bp):
TTCGGTTCGGGTTT
Found at i:1548 original size:19 final size:19
Alignment explanation
Indices: 1486--1554 Score: 56
Period size: 19 Copynumber: 3.7 Consensus size: 19
1476 AAATCGAAAC
*
1486 CGGTTTTTTCAGTTCGGTT
1 CGGTTTTTTCGGTTCGGTT
* **
1505 CGGGTTTTT---AACGGTT
1 CGGTTTTTTCGGTTCGGTT
1521 CGAG-TTTTTCGGTTCGGTT
1 CG-GTTTTTTCGGTTCGGTT
1540 CGGTTTTTTTCGGTT
1 CGG-TTTTTTCGGTT
1555 TTTCAATAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
16 12 0.31
17 1 0.03
18 1 0.03
19 15 0.38
20 10 0.26
ACGTcount: A:0.06, C:0.14, G:0.29, T:0.51
Consensus pattern (19 bp):
CGGTTTTTTCGGTTCGGTT
Found at i:1726 original size:25 final size:25
Alignment explanation
Indices: 1696--1747 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
1686 AACCAAAAAT
*
1696 CGAACCGTTTAAAGCCAAACTGAAC
1 CGAACCGTTTAAAGCCAAACCGAAC
1721 CGAACCGTTTAAAGCCAAACCGAAC
1 CGAACCGTTTAAAGCCAAACCGAAC
1746 CG
1 CG
1748 TTTTACTCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.38, C:0.31, G:0.17, T:0.13
Consensus pattern (25 bp):
CGAACCGTTTAAAGCCAAACCGAAC
Found at i:2661 original size:21 final size:21
Alignment explanation
Indices: 2637--2678 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
2627 GTCGAAAAAT
2637 TCAACAAAATAATCTCTTATA
1 TCAACAAAATAATCTCTTATA
2658 TCAACAAAATAATCTCTTATA
1 TCAACAAAATAATCTCTTATA
2679 GTCGAATGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.19, G:0.00, T:0.33
Consensus pattern (21 bp):
TCAACAAAATAATCTCTTATA
Found at i:9080 original size:2 final size:2
Alignment explanation
Indices: 9075--9100 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
9065 CTACACACGA
9075 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
9101 TAGGGAATCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:11267 original size:11 final size:11
Alignment explanation
Indices: 11234--11268 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
11224 TCTAGTCCCT
*
11234 GTACCTATAAA
1 GTACTTATAAA
*
11245 CTACTTATAAA
1 GTACTTATAAA
11256 GTACTTATAAA
1 GTACTTATAAA
11267 GT
1 GT
11269 TAAAAAATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.34
Consensus pattern (11 bp):
GTACTTATAAA
Found at i:17709 original size:13 final size:14
Alignment explanation
Indices: 17691--17720 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
17681 GTCCTTTATA
17691 TTTAAA-AAAATCT
1 TTTAAATAAAATCT
17704 TTTAAATAAAATCT
1 TTTAAATAAAATCT
17718 TTT
1 TTT
17721 GATATATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (14 bp):
TTTAAATAAAATCT
Found at i:20294 original size:40 final size:41
Alignment explanation
Indices: 20239--20321 Score: 132
Period size: 40 Copynumber: 2.0 Consensus size: 41
20229 AGTAACATGA
*
20239 CTCCTTAAGAGGATCACACCCAGACT-ACTCTTGGAAACTT
1 CTCCTCAAGAGGATCACACCCAGACTAACTCTTGGAAACTT
*
20279 CTCCTCAAGAGGATCACACCCAGACTACACTTTTGGAAACTT
1 CTCCTCAAGAGGATCACACCCAGACTA-ACTCTTGGAAACTT
20321 C
1 C
20322 AAAACCTGCA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
40 25 0.64
42 14 0.36
ACGTcount: A:0.30, C:0.31, G:0.14, T:0.24
Consensus pattern (41 bp):
CTCCTCAAGAGGATCACACCCAGACTAACTCTTGGAAACTT
Found at i:28924 original size:12 final size:11
Alignment explanation
Indices: 28900--29012 Score: 66
Period size: 12 Copynumber: 9.4 Consensus size: 11
28890 TTCAAAGAGG
28900 TTTTAT-TTAA
1 TTTTATATTAA
28910 TTTTATATTATA
1 TTTTATATTA-A
*
28922 TTTTATTTTAA
1 TTTTATATTAA
28933 TTTTAATATTAA
1 TTTT-ATATTAA
* *
28945 TTTTTTAAATAAA
1 --TTTTATATTAA
**
28958 TTAAATATTAATA
1 TTTTATATT-A-A
28971 TTTTAATATTATA
1 TTTT-ATATTA-A
*
28984 TTATAGATATTAA
1 TT-T-TATATTAA
28997 TTTTAATATTAA
1 TTTT-ATATTAA
29009 TTTT
1 TTTT
29013 TTAAATAAAT
Statistics
Matches: 80, Mismatches: 12, Indels: 20
0.71 0.11 0.18
Matches are distributed among these distances:
10 6 0.08
11 13 0.16
12 29 0.36
13 16 0.20
14 16 0.20
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.60
Consensus pattern (11 bp):
TTTTATATTAA
Found at i:28986 original size:26 final size:27
Alignment explanation
Indices: 28914--29008 Score: 89
Period size: 24 Copynumber: 3.8 Consensus size: 27
28904 ATTTAATTTT
* *
28914 ATATT-ATATTTT-AT-TTTAATTTTA
1 ATATTAATATTTTAATATTAAATTATA
*
28938 ATATTAATTTTTTAA-A-TAAATTA-A
1 ATATTAATATTTTAATATTAAATTATA
*
28962 ATATTAATATTTTAATATTATATTATA
1 ATATTAATATTTTAATATTAAATTATA
28989 GATATT-A-ATTTTAATATTAA
1 -ATATTAATATTTTAATATTAA
29009 TTTTTTAAAT
Statistics
Matches: 58, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
24 20 0.34
25 12 0.21
26 19 0.33
27 2 0.03
28 5 0.09
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (27 bp):
ATATTAATATTTTAATATTAAATTATA
Found at i:29008 original size:64 final size:64
Alignment explanation
Indices: 28909--29066 Score: 259
Period size: 64 Copynumber: 2.5 Consensus size: 64
28899 GTTTTATTTA
* *
28909 ATTTT-ATATTATATT-T-TATTTTAATTTTAATATTAATTTTTTAAATAAATTAAATATTAAT
1 ATTTTAATATTATATTATAGATATTAATTTTAATATTAATTTTTTAAATAAATTAAATATTAAT
28970 ATTTTAATATTATATTATAGATATTAATTTTAATATTAATTTTTTAAATAAATTAAATATTAAT
1 ATTTTAATATTATATTATAGATATTAATTTTAATATTAATTTTTTAAATAAATTAAATATTAAT
*
29034 TTTTTAATATTATATTATAGATATTTAATTTTA
1 ATTTTAATATTATATTATAGATA-TTAATTTTA
29067 TATCATATAA
Statistics
Matches: 90, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
61 5 0.06
62 10 0.11
63 1 0.01
64 65 0.72
65 9 0.10
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (64 bp):
ATTTTAATATTATATTATAGATATTAATTTTAATATTAATTTTTTAAATAAATTAAATATTAAT
Found at i:29016 original size:40 final size:37
Alignment explanation
Indices: 28961--29049 Score: 101
Period size: 38 Copynumber: 2.3 Consensus size: 37
28951 AAATAAATTA
*
28961 AATATTAATATTTTAATATTATATTATAGATATTAA-TTTT
1 AATATTAATATTTTAA-A-TAAATTA-A-ATATTAATTTTT
*
29001 AATATTAATTTTTTAAATAAATTAAATATTAATTTTTT
1 AATATTAATATTTTAAATAAATTAAATATTAA-TTTTT
29039 AATATT-ATATT
1 AATATTAATATT
29050 ATAGATATTT
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
36 7 0.16
37 5 0.11
38 16 0.36
39 1 0.02
40 15 0.34
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (37 bp):
AATATTAATATTTTAAATAAATTAAATATTAATTTTT
Found at i:29121 original size:20 final size:19
Alignment explanation
Indices: 29061--29122 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
29051 TAGATATTTA
*
29061 ATTTTATATCA-TATAAATT
1 ATTTTATAT-ATTATTAATT
*
29080 ATTTTATATATTATTAA-A
1 ATTTTATATATTATTAATT
29098 ATTTTATAT-TTATTTTAATT
1 ATTTTATATATTA--TTAATT
29118 ATTTT
1 ATTTT
29123 GATTTAAGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
17 3 0.08
18 10 0.28
19 18 0.50
20 5 0.14
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (19 bp):
ATTTTATATATTATTAATT
Found at i:29642 original size:31 final size:31
Alignment explanation
Indices: 29583--29643 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
29573 GTAGTTGTAT
* * **
29583 AAATTATTTAAATTTTAGTATTGTAAAACTA
1 AAATTATTTAAATATCAGTATTACAAAACTA
29614 AAATTATTTAAATATCAGTATTACAAAACT
1 AAATTATTTAAATATCAGTATTACAAAACT
29644 CTTTTAAGTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.48, C:0.07, G:0.05, T:0.41
Consensus pattern (31 bp):
AAATTATTTAAATATCAGTATTACAAAACTA
Found at i:36858 original size:15 final size:15
Alignment explanation
Indices: 36822--36865 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
36812 GGTGTGCAAA
36822 TCCGGGTACCCGGATT
1 TCCGGGTACCC-GATT
*
36838 TTCGGGTACCCGATT
1 TCCGGGTACCCGATT
36853 TCCGGGTACCCGA
1 TCCGGGTACCCGA
36866 AACTTCCGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
15 16 0.62
16 10 0.38
ACGTcount: A:0.14, C:0.32, G:0.30, T:0.25
Consensus pattern (15 bp):
TCCGGGTACCCGATT
Found at i:36924 original size:17 final size:16
Alignment explanation
Indices: 36902--36970 Score: 61
Period size: 15 Copynumber: 4.3 Consensus size: 16
36892 CCGTGTCCCG
*
36902 ACCCGGATGTTACGGGT
1 ACCCGGATATT-CGGGT
* *
36919 ACCCGG-TAATCGGCT
1 ACCCGGATATTCGGGT
*
36934 ACCCGGATTTTGCGGGT
1 ACCCGGATATT-CGGGT
*
36951 ACCCGG-TAATCGGGT
1 ACCCGGATATTCGGGT
36966 ACCCG
1 ACCCG
36971 ATACCTGGTT
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
15 20 0.48
16 6 0.14
17 16 0.38
ACGTcount: A:0.17, C:0.29, G:0.32, T:0.22
Consensus pattern (16 bp):
ACCCGGATATTCGGGT
Found at i:36938 original size:15 final size:15
Alignment explanation
Indices: 36914--36970 Score: 69
Period size: 15 Copynumber: 3.7 Consensus size: 15
36904 CCGGATGTTA
36914 CGGGTACCCGGTAAT
1 CGGGTACCCGGTAAT
* **
36929 CGGCTACCCGGATTTT
1 CGGGTACCCGG-TAAT
36945 GCGGGTACCCGGTAAT
1 -CGGGTACCCGGTAAT
36961 CGGGTACCCG
1 CGGGTACCCG
36971 ATACCTGGTT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
15 20 0.59
16 4 0.12
17 10 0.29
ACGTcount: A:0.16, C:0.30, G:0.33, T:0.21
Consensus pattern (15 bp):
CGGGTACCCGGTAAT
Found at i:36938 original size:32 final size:32
Alignment explanation
Indices: 36902--36970 Score: 111
Period size: 32 Copynumber: 2.2 Consensus size: 32
36892 CCGTGTCCCG
36902 ACCCGGATGTTACGGGTACCCGGTAATCGGCT
1 ACCCGGATGTTACGGGTACCCGGTAATCGGCT
* * *
36934 ACCCGGATTTTGCGGGTACCCGGTAATCGGGT
1 ACCCGGATGTTACGGGTACCCGGTAATCGGCT
36966 ACCCG
1 ACCCG
36971 ATACCTGGTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.17, C:0.29, G:0.32, T:0.22
Consensus pattern (32 bp):
ACCCGGATGTTACGGGTACCCGGTAATCGGCT
Found at i:42620 original size:29 final size:29
Alignment explanation
Indices: 42587--42643 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
42577 TAGTACTGGT
* *
42587 TTTTTTATAAACCGATCAATTTTATTTTA
1 TTTTTTACAAACCAATCAATTTTATTTTA
* *
42616 TTTTTTACAAATCAATCAATTTTGTTTT
1 TTTTTTACAAACCAATCAATTTTATTTT
42644 TTGAAAAATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.30, C:0.11, G:0.04, T:0.56
Consensus pattern (29 bp):
TTTTTTACAAACCAATCAATTTTATTTTA
Found at i:43534 original size:24 final size:24
Alignment explanation
Indices: 43507--43609 Score: 179
Period size: 24 Copynumber: 4.3 Consensus size: 24
43497 TAGTATATCT
43507 AGCCGTTACATATTTATTATTTCC
1 AGCCGTTACATATTTATTATTTCC
*
43531 AGCCGTTACTTATTTATTATTTCC
1 AGCCGTTACATATTTATTATTTCC
43555 AGCCGTTACATATTTATTATTTCC
1 AGCCGTTACATATTTATTATTTCC
* *
43579 AGCCGTTACTTATTTATTATTTTC
1 AGCCGTTACATATTTATTATTTCC
43603 AGCCGTT
1 AGCCGTT
43610 GATACAAAAT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 75 1.00
ACGTcount: A:0.22, C:0.20, G:0.10, T:0.48
Consensus pattern (24 bp):
AGCCGTTACATATTTATTATTTCC
Found at i:43565 original size:48 final size:48
Alignment explanation
Indices: 43507--43609 Score: 197
Period size: 48 Copynumber: 2.1 Consensus size: 48
43497 TAGTATATCT
43507 AGCCGTTACATATTTATTATTTCCAGCCGTTACTTATTTATTATTTCC
1 AGCCGTTACATATTTATTATTTCCAGCCGTTACTTATTTATTATTTCC
*
43555 AGCCGTTACATATTTATTATTTCCAGCCGTTACTTATTTATTATTTTC
1 AGCCGTTACATATTTATTATTTCCAGCCGTTACTTATTTATTATTTCC
43603 AGCCGTT
1 AGCCGTT
43610 GATACAAAAT
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.22, C:0.20, G:0.10, T:0.48
Consensus pattern (48 bp):
AGCCGTTACATATTTATTATTTCCAGCCGTTACTTATTTATTATTTCC
Found at i:46303 original size:21 final size:21
Alignment explanation
Indices: 46277--46323 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
46267 CCTATAATAT
46277 ATTAATTTATTCTTAAATTAA
1 ATTAATTTATTCTTAAATTAA
46298 ATTAATTTATTCTTAAATTAA
1 ATTAATTTATTCTTAAATTAA
46319 ATTAA
1 ATTAA
46324 AGTTATTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (21 bp):
ATTAATTTATTCTTAAATTAA
Found at i:46322 original size:26 final size:26
Alignment explanation
Indices: 46289--46349 Score: 88
Period size: 26 Copynumber: 2.3 Consensus size: 26
46279 TAATTTATTC
46289 TTAAATTAAA-TTAATTTATTCTTAAA
1 TTAAATTAAAGTT-ATTTATTCTTAAA
*
46315 TTAAATTAAAGTTATTTATTCTTAAT
1 TTAAATTAAAGTTATTTATTCTTAAA
*
46341 TTATATTAA
1 TTAAATTAA
46350 TATATTATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
26 30 0.94
27 2 0.06
ACGTcount: A:0.43, C:0.03, G:0.02, T:0.52
Consensus pattern (26 bp):
TTAAATTAAAGTTATTTATTCTTAAA
Found at i:46355 original size:21 final size:21
Alignment explanation
Indices: 46277--46355 Score: 77
Period size: 21 Copynumber: 3.5 Consensus size: 21
46267 CCTATAATAT
*
46277 ATTAATTTATTCTTAAATTAA
1 ATTAATATATTCTTAAATTAA
*
46298 ATTAATTTATTCTTAAATTAA
1 ATTAATATATTCTTAAATTAA
* *
46319 ATTAAAGTTATTTATTCTTAATTTAT
1 ATT-AA--TA--TATTCTTAAATTAA
46345 ATTAATATATT
1 ATTAATATATT
46356 ATAAATATAA
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
21 28 0.56
22 2 0.04
23 2 0.04
24 1 0.02
25 2 0.04
26 15 0.30
ACGTcount: A:0.41, C:0.04, G:0.01, T:0.54
Consensus pattern (21 bp):
ATTAATATATTCTTAAATTAA
Found at i:47647 original size:161 final size:161
Alignment explanation
Indices: 47382--47703 Score: 644
Period size: 161 Copynumber: 2.0 Consensus size: 161
47372 TCCAGCTTCT
47382 TGGCCTGCACATCCGGGGATTAATGTGTATGGGCAAGCTGTGCTGCCAAGTGCTAATCCATGTAG
1 TGGCCTGCACATCCGGGGATTAATGTGTATGGGCAAGCTGTGCTGCCAAGTGCTAATCCATGTAG
47447 TCAACCACCACAACCCGATGCTAATTACTGCAGCCAACCCTAATTTCTTGAAAAGGTATATACAC
66 TCAACCACCACAACCCGATGCTAATTACTGCAGCCAACCCTAATTTCTTGAAAAGGTATATACAC
47512 TAAGGACTATAGACATAGTTATCAGCATTTA
131 TAAGGACTATAGACATAGTTATCAGCATTTA
47543 TGGCCTGCACATCCGGGGATTAATGTGTATGGGCAAGCTGTGCTGCCAAGTGCTAATCCATGTAG
1 TGGCCTGCACATCCGGGGATTAATGTGTATGGGCAAGCTGTGCTGCCAAGTGCTAATCCATGTAG
47608 TCAACCACCACAACCCGATGCTAATTACTGCAGCCAACCCTAATTTCTTGAAAAGGTATATACAC
66 TCAACCACCACAACCCGATGCTAATTACTGCAGCCAACCCTAATTTCTTGAAAAGGTATATACAC
47673 TAAGGACTATAGACATAGTTATCAGCATTTA
131 TAAGGACTATAGACATAGTTATCAGCATTTA
47704 CTTCGTGAAG
Statistics
Matches: 161, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
161 161 1.00
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (161 bp):
TGGCCTGCACATCCGGGGATTAATGTGTATGGGCAAGCTGTGCTGCCAAGTGCTAATCCATGTAG
TCAACCACCACAACCCGATGCTAATTACTGCAGCCAACCCTAATTTCTTGAAAAGGTATATACAC
TAAGGACTATAGACATAGTTATCAGCATTTA
Found at i:50041 original size:21 final size:21
Alignment explanation
Indices: 49958--50025 Score: 127
Period size: 21 Copynumber: 3.2 Consensus size: 21
49948 CCTATAATAT
49958 ATTAATTTATTCTTAAATTAA
1 ATTAATTTATTCTTAAATTAA
*
49979 ATTAATTTATTTTTAAATTAA
1 ATTAATTTATTCTTAAATTAA
50000 ATTAATTTATTCTTAAATTAA
1 ATTAATTTATTCTTAAATTAA
50021 ATTAA
1 ATTAA
50026 AGTTATTTAT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 45 1.00
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (21 bp):
ATTAATTTATTCTTAAATTAA
Found at i:50050 original size:26 final size:26
Alignment explanation
Indices: 49970--50051 Score: 95
Period size: 26 Copynumber: 3.3 Consensus size: 26
49960 TAATTTATTC
49970 TTAAATTAAATTAATTTA---TT--T
1 TTAAATTAAATTAATTTATTCTTAAT
*
49991 TTAAATTAAATTAATTTATTCTTAAA
1 TTAAATTAAATTAATTTATTCTTAAT
50017 TTAAATTAAAGTT-ATTTATTCTTAAT
1 TTAAATTAAA-TTAATTTATTCTTAAT
*
50043 TTATATTAA
1 TTAAATTAA
50052 TATATTATAA
Statistics
Matches: 52, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
21 18 0.35
24 2 0.04
26 30 0.58
27 2 0.04
ACGTcount: A:0.43, C:0.02, G:0.01, T:0.54
Consensus pattern (26 bp):
TTAAATTAAATTAATTTATTCTTAAT
Found at i:50057 original size:21 final size:21
Alignment explanation
Indices: 49958--50073 Score: 101
Period size: 21 Copynumber: 5.4 Consensus size: 21
49948 CCTATAATAT
*
49958 ATTAATTTATTCTTAAATTAA
1 ATTAATATATTCTTAAATTAA
* *
49979 ATTAATTTATTTTTAAATTAA
1 ATTAATATATTCTTAAATTAA
*
50000 ATTAATTTATTCTTAAATTAA
1 ATTAATATATTCTTAAATTAA
* *
50021 ATTAAAGTTATTTATTCTTAATTTAT
1 ATT-AA--TA--TATTCTTAAATTAA
* *
50047 ATTAATATATT-ATAAA-TAT
1 ATTAATATATTCTTAAATTAA
50066 ATTAATAT
1 ATTAATAT
50074 TAATATTTAA
Statistics
Matches: 83, Mismatches: 7, Indels: 12
0.81 0.07 0.12
Matches are distributed among these distances:
19 11 0.13
20 3 0.04
21 47 0.57
22 2 0.02
23 2 0.02
24 1 0.01
25 2 0.02
26 15 0.18
ACGTcount: A:0.43, C:0.03, G:0.01, T:0.53
Consensus pattern (21 bp):
ATTAATATATTCTTAAATTAA
Found at i:50087 original size:12 final size:14
Alignment explanation
Indices: 50045--50087 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 14
50035 TTCTTAATTT
50045 ATATTAATATATT-
1 ATATTAATATATTA
50058 ATA--AATATATTA
1 ATATTAATATATTA
50070 ATATTAATAT-TTA
1 ATATTAATATATTA
50083 A-ATTA
1 ATATTA
50088 TAAAATATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
11 8 0.30
12 7 0.26
13 7 0.26
14 5 0.19
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (14 bp):
ATATTAATATATTA
Found at i:53016 original size:868 final size:869
Alignment explanation
Indices: 51314--53903 Score: 5127
Period size: 868 Copynumber: 3.0 Consensus size: 869
51304 GACTATAGAC
51314 ATGT-CGGGTAGTGATGA--TCTATCTTCGACATGTCGGGTGACTGAAGGACTTAAAATAGTTAA
1 ATGTGCGGGTAGTGATGATCTCTATCTTCGACATGTCGGGTGACTGAAGGACTTAAAATAGTTAA
51376 TGATTTGGAGTGCTAGATCACTTGCAGTTCTTCCAAGGTATATCCAATTAGATATTCCTTCTCAC
66 TGATTTGGAGTGCTAGATCACTTGCAGTTCTTCCAAGGTATATCCAATTAGATATTCCTTCTCAC
51441 ATTAGTGCAATTTACTTTTTTTTCCCATAAGATTGTATTTTCTTGTAAATATATGTATATGATAG
131 ATTAGTGCAATTTACTTTTTTTTCCCATAAGATTGTATTTTCTTGTAAATATATGTATATGATAG
*
51506 AGCTCACAGGCGGGGGTAGACAAGTGCGATCAGCATTTACATCTTCTGTGCAAAGGTGTGCATAT
196 AGCTCACAGGCGGGGGCAGACAAGTGCGATCAGCATTTACATCTTCTGTGCAAAGGTGTGCATAT
51571 TTTTCTTCAAATTTGTCTGCAATTAATTTTTTATGTGGTTTATAGTTTTCTCATACTACATGATA
261 TTTTCTTCAAATTTGTCTGCAATTAATTTTTTATGTGGTTTATAGTTTTCTCATACTACATGATA
51636 CTTTGGATGAGTCACATTGGCGAAATCTAAAGAAGAGTCTTCACCGTGTTTCATCCACAACAAAT
326 CTTTGGATGAGTCACATTGGCGAAATCTAAAGAAGAGTCTTCACCGTGTTTCATCCACAACAAAT
51701 GAAAAATATGAAGCAATGAAAGAGATTGAAGTATCTACTCTATCTCTTCTCCTTCCAATACCCAA
391 GAAAAATATGAAGCAATGAAAGAGATTGAAGTATCTACTCTATCTCTTCTCCTTCCAATACCCAA
51766 AAAAAGTGGCAACTTACTATTTATGGACTGCTCTTTTATTAAAAACATAGTTTTACTGTATTTTT
456 AAAAAGTGGCAACTTACTATTTATGGACTGCTCTTTTATTAAAAACATAGTTTTACTGTATTTTT
51831 GTGTGCGGGATGTATAGCGCAGAGTTTGGATTCTTTCTAAAAATGAGAATGGCAAAGATGCAGGT
521 GTGTGCGGGATGTATAGCGCAGAGTTTGGATTCTTTCTAAAAATGAGAATGGCAAAGATGCAGGT
*
51896 GTAAGTGGCATTGTCTACTTACAATGTTTTGAAGTTTTTTTTAACCTATTCATAGATACCCATCA
586 GTAAGTGGCATTGTCTACTTACACTGTTTTGAAGTTTTTTTTAACCTATTCATAGATACCCATCA
51961 CATTTCAGGCTATGGTAGGGAGATATCAGGATTCATATGATATTTTTGCCTATAATCAGCATGCA
651 CATTTCAGGCTATGGTAGGGAGATATCAGGATTCATATGATATTTTTGCCTATAATCAGCATGCA
52026 TATGGCTGTTTCTTCAAGGATATGTCTCTATTCCTTCCATAAATCTTGTTTAGTTGTTTATATTT
716 TATGGCTGTTTCTTCAAGGATATGTCTCTATTCCTTCCATAAATCTTGTTTAGTTGTTTATATTT
52091 AATTAAATTAAAATTTAACAACCGCATACTTGAAAACTATTTTAATATATG-AAAACACTTTTCA
781 AATTAAATTAAAATTTAACAACCGCATACTTGAAAACTATTTTAATATATGAAAAACACTTTTCA
52155 CTACCCCCAAAGGAATATACGCAA
846 CTACCCCCAAAGGAATATACGCAA
52179 ATGTGCGGGTAGTGATGATCTCTATCTTCGACATGTCGGGTGACTGAAGGACTTAAAATAGTTAA
1 ATGTGCGGGTAGTGATGATCTCTATCTTCGACATGTCGGGTGACTGAAGGACTTAAAATAGTTAA
52244 TGATTTGGAGTGCTAGATCACTTGCAGTTCTTCCAAGGTATATCCAATTAGATATTCCTTCTCAC
66 TGATTTGGAGTGCTAGATCACTTGCAGTTCTTCCAAGGTATATCCAATTAGATATTCCTTCTCAC
52309 ATTAGTGCAATTTACTTTTTTTTCCCATAAGATTGTATTTTCTTGTAAATATATGTATATGATAG
131 ATTAGTGCAATTTACTTTTTTTTCCCATAAGATTGTATTTTCTTGTAAATATATGTATATGATAG
52374 AGCTCACAGGCGGGGGCAGACAAGTGCGATCAGCATTTACATCTTCTGTGCAAAGGTGTGCATAT
196 AGCTCACAGGCGGGGGCAGACAAGTGCGATCAGCATTTACATCTTCTGTGCAAAGGTGTGCATAT
52439 TTTTCTTCAAATTTGTCTGCAATTAATTTTTTATGTGGTTTATAGTTTTCTCATACTACATGATA
261 TTTTCTTCAAATTTGTCTGCAATTAATTTTTTATGTGGTTTATAGTTTTCTCATACTACATGATA
52504 CTTTGGATGAGTCACATTGGCGAAATCTAAAGAAGAGTCTTCACCGTGTTTCATCCACAACAAAT
326 CTTTGGATGAGTCACATTGGCGAAATCTAAAGAAGAGTCTTCACCGTGTTTCATCCACAACAAAT
52569 GAAAAATATGAAGCAATGAAAGAGATTGAAGTATCTACTCTATCTCTTCTCCTTCCAATACCCAA
391 GAAAAATATGAAGCAATGAAAGAGATTGAAGTATCTACTCTATCTCTTCTCCTTCCAATACCCAA
52634 AAAAAGTGGCAACTTACTATTTATGGACTGCTCTTTTATTAAAAACATAGTTTTACTGTATTTTT
456 AAAAAGTGGCAACTTACTATTTATGGACTGCTCTTTTATTAAAAACATAGTTTTACTGTATTTTT
52699 GTGTGCGGGATGTATAGCGCAGAGTTTGGATTCTTTCTAAAAATGAGAATGGCAAAGATGCAGGT
521 GTGTGCGGGATGTATAGCGCAGAGTTTGGATTCTTTCTAAAAATGAGAATGGCAAAGATGCAGGT
52764 GTAAGTGGCATTGTCTACTTACACTGTTTTGAAG-TTTTTTTAACCTATTCATAGATACCCATCA
586 GTAAGTGGCATTGTCTACTTACACTGTTTTGAAGTTTTTTTTAACCTATTCATAGATACCCATCA
52828 CATTTCAGGCTATGGTAGGGAGATATCAGGATTCATATGATATTTTTGCCTATAATCAGCATGCA
651 CATTTCAGGCTATGGTAGGGAGATATCAGGATTCATATGATATTTTTGCCTATAATCAGCATGCA
52893 TATGGCTGTTTCTTCAAGGATATGTCTCTATTCCTTCCATAAATCTTGTTTAGTTGTTTATATTT
716 TATGGCTGTTTCTTCAAGGATATGTCTCTATTCCTTCCATAAATCTTGTTTAGTTGTTTATATTT
52958 AATTAAATTAAAATTTAACAACCGCATACTTGAAAACTATTTTAATATATGAAAAACACTTTTCA
781 AATTAAATTAAAATTTAACAACCGCATACTTGAAAACTATTTTAATATATGAAAAACACTTTTCA
53023 CTACCCCCAAAGGAATATACGCAA
846 CTACCCCCAAAGGAATATACGCAA
53047 ATGTGCGGGTAGTGATGATCTCTATCTTCGACATGTCGGGTGACTGAAGGACTTAAAATAGTTAA
1 ATGTGCGGGTAGTGATGATCTCTATCTTCGACATGTCGGGTGACTGAAGGACTTAAAATAGTTAA
53112 TGATTTGGAGTGCTAGATCACTTGCAGTTCTTCCAAGGTATATCCAATTAGATATTCCTTCTCAC
66 TGATTTGGAGTGCTAGATCACTTGCAGTTCTTCCAAGGTATATCCAATTAGATATTCCTTCTCAC
53177 ATTAGTGCAATTTACTTTTTTTTCCCATAAGATTGTATTTTCTTGTAAATATATGTATATGATAG
131 ATTAGTGCAATTTACTTTTTTTTCCCATAAGATTGTATTTTCTTGTAAATATATGTATATGATAG
53242 AGCTCACAGGCGGGGGCAGACAAGTGCGATCAGCATTTACATCTTCTGTGCAAAGGTGTGCATAT
196 AGCTCACAGGCGGGGGCAGACAAGTGCGATCAGCATTTACATCTTCTGTGCAAAGGTGTGCATAT
53307 TTTTCTTCAAATTTGTCTGCAATTAATTTTTTATGTGGTTTATAGTTTTCTCATACTACATGATA
261 TTTTCTTCAAATTTGTCTGCAATTAATTTTTTATGTGGTTTATAGTTTTCTCATACTACATGATA
53372 CTTTGGATGAGTCACATTGGCGAAATCTAAAGAAGAGTCTTCACCGTGTTTCATCCACAACAAAT
326 CTTTGGATGAGTCACATTGGCGAAATCTAAAGAAGAGTCTTCACCGTGTTTCATCCACAACAAAT
53437 GAAAAATATGAAGCAATGAAAGAGATTGAAGTATCTACTCTATCTCTTCTCCTTCCAATACCCAA
391 GAAAAATATGAAGCAATGAAAGAGATTGAAGTATCTACTCTATCTCTTCTCCTTCCAATACCCAA
53502 AAAAAGTGGCAACTTACTATTTATGGACTGCTCTTTTATTAAAAACATAGTTTTACTGTATTTTT
456 AAAAAGTGGCAACTTACTATTTATGGACTGCTCTTTTATTAAAAACATAGTTTTACTGTATTTTT
53567 GTGTGCGGGATGTATAGCGCAGAGTTTGGATTCTTTCTAAAAATGAGAATGGCAAAGATGCAGGT
521 GTGTGCGGGATGTATAGCGCAGAGTTTGGATTCTTTCTAAAAATGAGAATGGCAAAGATGCAGGT
53632 GTAAGTGGCATTGTCTACTTACACTGTTTTGAAGTTTTTTTTAACCTATTCATAGATACCCATCA
586 GTAAGTGGCATTGTCTACTTACACTGTTTTGAAGTTTTTTTTAACCTATTCATAGATACCCATCA
53697 CATTTCAGGCTATGGTAGGGAGATATCAGGATTCATATGATATTTTTGCCTATAATCAGCATGCA
651 CATTTCAGGCTATGGTAGGGAGATATCAGGATTCATATGATATTTTTGCCTATAATCAGCATGCA
53762 TATGGCTGTTTCTTCAAGGATATGTCTCTATTCCTTCCATAAATCTTGTTTAGTTGTTTATATTT
716 TATGGCTGTTTCTTCAAGGATATGTCTCTATTCCTTCCATAAATCTTGTTTAGTTGTTTATATTT
53827 AATTAAATTAAAATTTAACAACCGCATACTTGAAAACTATTTTAATATATGAAAAACACTTTTCA
781 AATTAAATTAAAATTTAACAACCGCATACTTGAAAACTATTTTAATATATGAAAAACACTTTTCA
53892 CTACCCCCAAAG
846 CTACCCCCAAAG
53904 AAAGAAAAAA
Statistics
Matches: 1718, Mismatches: 2, Indels: 6
1.00 0.00 0.00
Matches are distributed among these distances:
865 4 0.00
866 13 0.01
867 211 0.12
868 1253 0.73
869 237 0.14
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.36
Consensus pattern (869 bp):
ATGTGCGGGTAGTGATGATCTCTATCTTCGACATGTCGGGTGACTGAAGGACTTAAAATAGTTAA
TGATTTGGAGTGCTAGATCACTTGCAGTTCTTCCAAGGTATATCCAATTAGATATTCCTTCTCAC
ATTAGTGCAATTTACTTTTTTTTCCCATAAGATTGTATTTTCTTGTAAATATATGTATATGATAG
AGCTCACAGGCGGGGGCAGACAAGTGCGATCAGCATTTACATCTTCTGTGCAAAGGTGTGCATAT
TTTTCTTCAAATTTGTCTGCAATTAATTTTTTATGTGGTTTATAGTTTTCTCATACTACATGATA
CTTTGGATGAGTCACATTGGCGAAATCTAAAGAAGAGTCTTCACCGTGTTTCATCCACAACAAAT
GAAAAATATGAAGCAATGAAAGAGATTGAAGTATCTACTCTATCTCTTCTCCTTCCAATACCCAA
AAAAAGTGGCAACTTACTATTTATGGACTGCTCTTTTATTAAAAACATAGTTTTACTGTATTTTT
GTGTGCGGGATGTATAGCGCAGAGTTTGGATTCTTTCTAAAAATGAGAATGGCAAAGATGCAGGT
GTAAGTGGCATTGTCTACTTACACTGTTTTGAAGTTTTTTTTAACCTATTCATAGATACCCATCA
CATTTCAGGCTATGGTAGGGAGATATCAGGATTCATATGATATTTTTGCCTATAATCAGCATGCA
TATGGCTGTTTCTTCAAGGATATGTCTCTATTCCTTCCATAAATCTTGTTTAGTTGTTTATATTT
AATTAAATTAAAATTTAACAACCGCATACTTGAAAACTATTTTAATATATGAAAAACACTTTTCA
CTACCCCCAAAGGAATATACGCAA
Found at i:56536 original size:355 final size:355
Alignment explanation
Indices: 55885--56550 Score: 1305
Period size: 355 Copynumber: 1.9 Consensus size: 355
55875 TATGCTTCAT
*
55885 TGAAAAAAAAATATAAGCTTGTTTGTTGAATATATCTTTGTGTTCCATATGCATTAAAACATTTT
1 TGAAAAAAAAATACAAGCTTGTTTGTTGAATATATCTTTGTGTTCCATATGCATTAAAACATTTT
*
55950 TGAGAAATTGAGGTGTACCTATTTATTGGGAATTATGGGGTTCACCTAGCAGAAAAGTGAAAAAT
66 TGAGAAATTGAGGTGTACCTATTTACTGGGAATTATGGGGTTCACCTAGCAGAAAAGTGAAAAAT
56015 CCTTGACTGAAGTTTTCAAGTTGCTATATATGAATTTAAGTTTTTACTACTACAAATACATTTTT
131 CCTTGACTGAAGTTTTCAAGTTGCTATATATGAATTTAAGTTTTTACTACTACAAATACATTTTT
56080 TCAGGTTTTTAATGATTTCATTGGTTTTGGTGGACTACTGCTTCTGAATAAGCTAATTTGGTTTC
196 TCAGGTTTTTAATGATTTCATTGGTTTTGGTGGACTACTGCTTCTGAATAAGCTAATTTGGTTTC
56145 TTCAACAAGGTTTTCATATCTCTAAATCTAATTCTTCTTAAAAAGATAGTTGTGGCCACCACATC
261 TTCAACAAGGTTTTCATATCTCTAAATCTAATTCTTCTTAAAAAGATAGTTGTGGCCACCACATC
56210 TCTAGTTTTGTTGTAGCACTCTTTTCATTC
326 TCTAGTTTTGTTGTAGCACTCTTTTCATTC
56240 TGAAAAAAAAATACAAGCTTGTTTGTTGAATATATCTTTGTGTTCCATATGCATTAAAACATTTT
1 TGAAAAAAAAATACAAGCTTGTTTGTTGAATATATCTTTGTGTTCCATATGCATTAAAACATTTT
56305 TGAGAAATTGAGGTGTACCTATTTACTGGGAATTATGGGGTTCACCTAGCAGAAAAGTGAAAAAT
66 TGAGAAATTGAGGTGTACCTATTTACTGGGAATTATGGGGTTCACCTAGCAGAAAAGTGAAAAAT
*
56370 CCTTGACTGAAGTTTTCAAGTTGCTATATATGAATTTAAGTTTTTACTACTTCAAATACATTTTT
131 CCTTGACTGAAGTTTTCAAGTTGCTATATATGAATTTAAGTTTTTACTACTACAAATACATTTTT
56435 TCAGGTTTTTAATGATTTCATTGGTTTTGGTGGACTACTGCTTCTGAATAAGCTAATTTGGTTTC
196 TCAGGTTTTTAATGATTTCATTGGTTTTGGTGGACTACTGCTTCTGAATAAGCTAATTTGGTTTC
56500 TTCAACAAGGTTTTCATATCTCTAAATCTAATTCTTCTTAAAAAGATAGTT
261 TTCAACAAGGTTTTCATATCTCTAAATCTAATTCTTCTTAAAAAGATAGTT
56551 TTGTTTTAGC
Statistics
Matches: 308, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
355 308 1.00
ACGTcount: A:0.30, C:0.13, G:0.16, T:0.40
Consensus pattern (355 bp):
TGAAAAAAAAATACAAGCTTGTTTGTTGAATATATCTTTGTGTTCCATATGCATTAAAACATTTT
TGAGAAATTGAGGTGTACCTATTTACTGGGAATTATGGGGTTCACCTAGCAGAAAAGTGAAAAAT
CCTTGACTGAAGTTTTCAAGTTGCTATATATGAATTTAAGTTTTTACTACTACAAATACATTTTT
TCAGGTTTTTAATGATTTCATTGGTTTTGGTGGACTACTGCTTCTGAATAAGCTAATTTGGTTTC
TTCAACAAGGTTTTCATATCTCTAAATCTAATTCTTCTTAAAAAGATAGTTGTGGCCACCACATC
TCTAGTTTTGTTGTAGCACTCTTTTCATTC
Found at i:63812 original size:13 final size:13
Alignment explanation
Indices: 63794--63828 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
63784 TATCATGCTT
63794 CTCACGTGTGTGA
1 CTCACGTGTGTGA
63807 CTCACGTGTGTGA
1 CTCACGTGTGTGA
63820 CTCACGTGT
1 CTCACGTGT
63829 TTCTCCTCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.14, C:0.26, G:0.29, T:0.31
Consensus pattern (13 bp):
CTCACGTGTGTGA
Found at i:66429 original size:334 final size:333
Alignment explanation
Indices: 65802--66457 Score: 1089
Period size: 334 Copynumber: 2.0 Consensus size: 333
65792 GCAACCGATG
65802 TAGAGGTTGTCGATGGTCCGACCACACAAAGGGTAAAACTGATCCACGGCTTTCGTCACATGTTT
1 TAGAGGTTGTCGATGGTCCGACCACACAAAGGGTAAAACTGATCCACGGCTTTCGTCACATGTTT
* *
65867 GTTTTAAAACAAGATGAATAGTGTGAAGTGTGATGGAGTGAATTGATCCAACAATGACAATGAGA
66 GTTTTAAAACAAGATGAATAGTGTGAAATATGATGGAGTGAATTGATCCAACAATGACAATGAGA
*** *
65932 ATGGCTTCTGGCGATAACTTTCCGAGAATATGGCTTAATCATTTCCTTTGAAATAATACGAACTC
131 ATGGCTTCCAACGATAACTTTCCGAGAATATGGCTTAACCATTTCCTTTGAAATAATACGAACTC
* * * *
65997 CCATCTCGATTTTGTGTTGGTAAATAAACGAGTAATTTTCCTATAACCAAATTTGTGAGAATGCG
196 CCATCTCAATTTTATGTTGGTAAATAAACGAGTAATTTCCCTATAACCAAATTTGTGAGAATACG
*
66062 AAATAAAAGCGGAAAAATAATACCCGAAATTGATAACAGAGTTCAGCCAATTTTGTCTACATTTC
261 AAATAAAAGCGGAAAAATAATACCCGAAATTGATAACAGAGTTCAGCCAATTTTGCCTACATTTC
66127 CGGATTGC
326 CGGATTGC
** * *
66135 TAGAGGTTGTCGATGGTCCGACCACACAAAGGGTAAAACTGATTTATGGCTTTCGTCACGTGTTT
1 TAGAGGTTGTCGATGGTCCGACCACACAAAGGGTAAAACTGATCCACGGCTTTCGTCACATGTTT
* *
66200 GTTTTAAAACAAGATGAATGGTGTGAAATATGATGGAGTGAATTGATCCAACAATGAGAATGAGA
66 GTTTTAAAACAAGATGAATAGTGTGAAATATGATGGAGTGAATTGATCCAACAATGACAATGAGA
*
66265 ATGGCTTCCAACGATAAACTTTCCGAGAATATGGCTTAACCATTTCCTTTGAAATAATATGAACT
131 ATGGCTTCCAACGAT-AACTTTCCGAGAATATGGCTTAACCATTTCCTTTGAAATAATACGAACT
66330 CCCATCTCAATTTTATGTTGGTAAATAAACGAGTAATTTCCCTATAACTC-AATTTGTGAGAATA
195 CCCATCTCAATTTTATGTTGGTAAATAAACGAGTAATTTCCCTATAAC-CAAATTTGTGAGAATA
* * * *
66394 CGAAATAAAAGCGGAAAAATAATACTCGGAATTGATAACGGAGTTCAGCTAATTTTGCCTACAT
259 CGAAATAAAAGCGGAAAAATAATACCCGAAATTGATAACAGAGTTCAGCCAATTTTGCCTACAT
66458 CTCTGAATTA
Statistics
Matches: 299, Mismatches: 22, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
333 134 0.45
334 164 0.55
335 1 0.00
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (333 bp):
TAGAGGTTGTCGATGGTCCGACCACACAAAGGGTAAAACTGATCCACGGCTTTCGTCACATGTTT
GTTTTAAAACAAGATGAATAGTGTGAAATATGATGGAGTGAATTGATCCAACAATGACAATGAGA
ATGGCTTCCAACGATAACTTTCCGAGAATATGGCTTAACCATTTCCTTTGAAATAATACGAACTC
CCATCTCAATTTTATGTTGGTAAATAAACGAGTAATTTCCCTATAACCAAATTTGTGAGAATACG
AAATAAAAGCGGAAAAATAATACCCGAAATTGATAACAGAGTTCAGCCAATTTTGCCTACATTTC
CGGATTGC
Found at i:68898 original size:15 final size:15
Alignment explanation
Indices: 68856--68904 Score: 80
Period size: 15 Copynumber: 3.3 Consensus size: 15
68846 TGATCAGGTA
*
68856 AGCTGCAGTGTTAAT
1 AGCTGCAGTGTTGAT
*
68871 AACTGCAGTGTTGAT
1 AGCTGCAGTGTTGAT
68886 AGCTGCAGTGTTGAT
1 AGCTGCAGTGTTGAT
68901 AGCT
1 AGCT
68905 TCAGCCTATA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.24, C:0.14, G:0.29, T:0.33
Consensus pattern (15 bp):
AGCTGCAGTGTTGAT
Found at i:74550 original size:2 final size:2
Alignment explanation
Indices: 74543--74567 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
74533 GACTTATACG
74543 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
74568 GGATATGCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Done.