genome.fa.s2986.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002986.1 Hibiscus syriacus cultivar Beakdansim tig00006175_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103555

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5299--5328	7	4.4	7	91	8	53	60	13	13	13	1.60
5299--5328	13	2.2	13	94	5	51	60	13	13	13	1.60
5371--5408	20	2.0	20	89	5	60	65	13	7	13	1.46
5509--5595	43	2.0	44	86	2	122	33	24	12	29	1.92
6973--7032	29	2.1	27	84	6	75	61	1	5	31	1.27
7979--8018	21	1.9	21	85	10	55	67	5	5	22	1.30
9014--9043	16	1.9	15	93	6	51	20	20	26	33	1.97
9233--9312	3	26.3	3	82	2	79	55	0	0	45	0.99
9233--9313	12	6.7	12	87	2	99	54	0	0	45	0.99
9228--9323	18	5.5	18	78	10	83	54	0	0	45	0.99
9272--9323	12	4.3	12	80	9	52	51	0	0	48	1.00
13280--13609	161	2.1	159	79	11	352	51	5	5	37	1.46
14966--15018	3	18.0	3	78	18	58	66	0	0	33	0.92
14982--15030	16	3.2	16	86	11	59	73	0	2	24	0.94
14967--15014	15	3.1	16	88	5	64	66	0	0	33	0.92
14966--15021	10	5.1	11	81	14	62	66	0	0	33	0.92
24375--24415	2	20.5	2	100	0	82	48	0	0	51	1.00
27990--28014	3	8.3	3	100	0	50	32	0	0	68	0.90
28989--29016	2	14.0	2	100	0	56	50	0	0	50	1.00
30703--30797	33	2.9	33	100	0	190	21	14	25	38	1.91
32591--32633	21	2.0	21	90	0	68	32	27	23	16	1.96
32664--32706	22	1.9	22	85	4	59	34	34	20	9	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34179--34499	103	3.1	103	96	0	579	25	13	23	37	1.91
34521--34575	23	2.4	24	87	6	78	20	23	27	29	1.99
36299--36619	103	3.1	103	98	0	615	25	13	23	36	1.92
36635--36695	23	2.7	23	89	0	95	19	26	27	26	1.99
39408--39450	21	2.0	21	90	0	68	32	27	23	16	1.96
39960--39995	2	18.0	2	100	0	72	50	0	0	50	1.00
41006--41326	103	3.1	103	98	0	606	26	13	23	36	1.92
41342--41402	23	2.7	23	89	0	95	19	26	27	26	1.99
48286--48339	22	2.5	22	100	0	108	50	14	12	22	1.77
52912--52947	15	2.4	15	90	0	54	69	0	0	30	0.89
53687--53789	15	6.5	15	78	15	100	46	0	2	50	1.16
53740--53834	22	4.2	22	71	7	82	40	0	10	49	1.37
53769--54987	54	22.4	54	71	17	606	33	0	13	52	1.41
53814--53921	32	3.7	31	76	23	135	36	0	12	51	1.39
53846--53889	22	2.0	22	95	0	79	38	0	11	50	1.39
53868--54648	80	9.7	80	80	12	478	33	0	13	52	1.42
53947--54713	32	25.8	32	71	23	428	33	0	13	52	1.42
53980--54022	22	2.0	22	100	0	86	34	0	13	51	1.42
54150--54192	22	2.0	22	90	0	68	37	0	9	53	1.33
54204--54246	22	2.0	22	100	0	86	34	0	13	51	1.42
54229--54311	33	2.6	32	94	1	139	32	1	13	53	1.48
54371--54487	22	5.0	22	81	10	108	32	0	15	52	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54499--54541	22	2.0	22	100	0	86	34	0	13	51	1.42
54553--54617	22	3.0	22	77	6	78	30	0	18	50	1.47
54597--54713	31	3.8	32	93	5	204	35	0	13	50	1.42
54770--54811	21	2.0	22	95	4	77	35	0	14	50	1.43
54792--54875	32	2.7	32	90	1	134	33	0	11	54	1.37
54814--54871	18	3.4	18	72	18	61	29	0	12	58	1.34
54935--54977	22	2.0	22	95	0	77	37	0	11	51	1.39
55002--55060	31	1.9	31	89	0	91	42	10	5	42	1.60
58629--58669	21	2.0	21	86	13	59	21	0	14	63	1.30
58700--59213	257	2.0	256	95	0	920	35	16	17	30	1.92
59482--59722	119	2.0	119	80	4	263	50	6	5	37	1.52
60890--61548	137	4.8	136	85	2	813	24	15	25	34	1.95
67644--67727	42	2.0	42	85	0	114	19	19	11	50	1.78
70197--70264	28	2.4	28	88	7	102	30	23	14	30	1.94
70911--70936	3	8.7	3	100	0	52	65	0	0	34	0.93
71181--71250	25	2.9	24	77	16	65	42	2	1	52	1.24
71188--71239	24	2.2	24	83	10	63	46	1	1	50	1.23
81805--81831	13	2.1	13	100	0	54	14	29	14	40	1.86
87443--87500	21	2.5	24	73	15	59	65	8	5	20	1.40
88441--88482	18	2.3	18	95	0	75	16	26	9	47	1.77
90161--90192	16	1.9	17	93	6	57	40	0	15	43	1.47
98665--98725	31	2.0	31	93	0	104	13	18	49	19	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98665--98723	18	3.6	18	78	19	74	10	18	50	20	1.75
98669--98705	13	2.8	13	91	0	65	10	21	48	18	1.78

Tables:   1

The End!