genome.fa.s2988.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002988.1 Hibiscus syriacus cultivar Beakdansim tig00006177_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96812

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14471--14514	15	2.8	16	82	3	63	50	11	9	29	1.69
14901--15055	59	2.6	59	85	7	190	34	21	4	38	1.74
14901--15059	60	2.7	58	85	6	196	35	21	4	38	1.73
15224--15386	59	2.7	59	75	12	172	43	4	21	30	1.73
21086--21123	3	12.7	3	100	0	76	0	31	0	68	0.90
31991--32034	13	3.4	13	100	0	88	15	47	15	20	1.82
32012--32052	18	2.3	18	91	0	64	14	51	21	12	1.75
31991--32075	13	6.0	13	75	17	71	14	44	21	20	1.86
31991--32075	31	3.0	26	75	18	71	14	44	21	20	1.86
32034--32081	8	6.5	8	81	18	68	12	39	27	20	1.89
34728--34835	53	2.1	52	85	5	146	34	23	5	37	1.78
34734--35291	276	2.0	279	91	3	910	39	17	7	34	1.79
35611--35637	2	13.5	2	100	0	54	48	0	0	51	1.00
37300--37353	2	27.0	2	100	0	108	50	0	0	50	1.00
46424--46488	31	2.2	29	83	10	78	55	0	0	44	0.99
47720--47955	128	1.8	128	98	0	454	50	4	9	35	1.55
49927--49970	22	2.0	22	95	0	79	40	18	6	34	1.77
53028--53541	268	2.0	256	90	7	828	25	13	16	44	1.83
55309--55549	130	1.9	130	93	0	419	34	16	17	31	1.92
73770--73828	30	2.0	30	93	0	100	3	59	0	37	1.14
73773--73842	15	4.6	15	80	18	74	1	58	0	40	1.07
73792--73878	41	2.0	44	82	10	110	3	55	1	40	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74608--74638	15	2.0	16	93	6	55	22	12	32	32	1.92
80127--80158	16	2.0	16	100	0	64	62	18	12	6	1.50
80223--80281	10	5.7	10	73	15	57	57	20	11	10	1.63
80227--80275	16	3.1	16	93	0	89	57	22	12	8	1.61
81026--81055	14	2.1	14	93	0	51	56	20	13	10	1.65
81019--81067	24	2.0	24	92	0	80	53	20	14	12	1.73
82455--82564	21	5.3	21	67	4	89	20	19	25	34	1.96
82476--82753	41	6.8	41	92	1	375	15	20	24	39	1.91
82514--82584	20	3.5	20	73	3	70	11	21	28	39	1.87
83581--83625	6	7.5	6	94	0	72	4	15	46	33	1.66
83711--83908	20	9.6	20	65	18	102	39	24	20	14	1.90
83731--83842	21	5.4	21	65	19	74	39	25	19	15	1.91
83708--83905	41	4.8	41	90	3	308	39	24	20	15	1.91
85387--85431	22	2.0	22	82	4	54	42	2	8	46	1.47
89177--89225	24	2.1	24	84	3	64	24	2	14	59	1.46
91733--91847	50	2.3	50	83	3	142	33	13	8	45	1.74
93918--93942	13	1.9	13	100	0	50	56	4	24	16	1.57

Tables:   1

The End!