genome.fa.s299.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000299.1 Hibiscus syriacus cultivar Beakdansim tig00000550_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47876

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
651--698	14	2.9	17	76	23	57	47	18	20	12	1.81
639--693	14	3.5	14	76	23	56	49	20	20	10	1.78
717--802	20	4.3	20	77	5	93	18	20	19	40	1.91
705--792	40	2.4	37	85	11	110	15	21	21	40	1.90
725--811	20	4.3	20	79	7	86	16	22	24	36	1.94
1078--1129	20	2.5	21	87	3	70	21	23	17	38	1.93
4277--4341	19	3.7	19	78	19	86	46	18	21	13	1.84
4292--4323	14	2.3	14	94	0	55	50	15	21	12	1.77
4337--4427	33	2.7	33	91	1	137	16	21	17	43	1.87
4533--4569	14	2.6	15	87	12	60	48	21	0	29	1.50
5922--5988	21	3.2	21	65	4	55	19	17	35	26	1.94
5953--6128	42	4.2	42	79	0	190	23	17	37	21	1.94
5952--6127	84	2.1	84	97	0	334	23	17	37	21	1.94
6365--6517	78	1.9	79	89	7	238	43	17	13	25	1.85
8223--8310	33	2.6	33	85	8	117	39	20	27	12	1.88
8293--8356	19	3.4	19	95	2	112	50	21	17	10	1.77
8357--8400	18	2.4	19	92	3	72	9	15	27	47	1.76
8951--9003	20	2.7	20	90	0	79	28	20	26	24	1.99
13177--13214	20	1.9	20	84	10	51	57	18	10	13	1.63
14149--14213	2	32.5	2	96	0	121	49	1	0	49	1.10
17147--17215	21	3.3	21	82	8	77	20	28	23	27	1.99
17724--17796	34	2.1	34	87	0	101	52	5	6	35	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17917--18146	70	3.4	69	71	12	233	34	23	5	36	1.78
17917--18209	133	2.2	133	91	0	469	35	23	4	36	1.75
18118--18245	63	2.0	63	93	0	220	38	22	0	38	1.60
18489--19054	117	4.9	117	90	0	825	33	22	23	21	1.97
18387--19039	234	2.8	232	86	5	853	34	21	22	21	1.97
19573--19607	16	2.2	16	100	0	70	31	14	25	28	1.95
22906--23030	31	4.0	31	87	2	171	19	19	23	38	1.93
26738--26870	31	4.3	31	97	0	230	20	18	21	40	1.91
26738--26893	31	5.0	31	92	1	206	21	17	21	39	1.92
28394--28445	27	2.0	27	85	11	72	28	3	9	57	1.48
28542--28583	21	2.0	21	85	0	57	50	0	0	50	1.00
29184--29300	61	1.9	61	81	5	139	23	30	27	18	1.98
29438--29755	5	63.6	5	100	0	636	20	0	19	60	1.37
33121--33162	13	3.2	13	89	3	57	28	0	21	50	1.49
33831--33876	3	15.3	3	95	0	83	32	2	0	65	1.05
34745--34801	29	2.0	29	96	0	105	22	31	29	15	1.95
34889--34946	23	2.5	23	88	0	89	25	18	17	37	1.93
35123--35160	9	4.2	9	83	10	51	31	0	2	65	1.06
35197--35226	4	7.5	4	92	0	51	26	0	20	53	1.46
35154--35265	47	2.3	49	89	6	167	33	1	16	47	1.58
35357--35409	28	1.9	27	88	3	79	32	1	16	49	1.57
35356--35420	27	2.3	29	82	10	82	36	1	15	46	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35626--35665	21	1.9	21	100	0	80	27	0	15	57	1.38
35850--35945	28	3.3	29	81	8	101	40	1	10	47	1.45
38239--38271	11	2.8	12	90	9	50	39	9	12	39	1.74
38259--38313	17	3.2	17	81	2	65	52	3	1	41	1.29
38515--38641	3	43.7	3	74	6	64	41	4	2	51	1.36
38430--38878	26	17.7	26	75	12	298	45	7	2	44	1.44
38559--38767	116	1.8	116	94	2	375	44	7	2	45	1.45
38443--39197	52	14.5	51	69	19	249	44	8	2	44	1.48
38559--38805	116	2.1	115	88	4	363	43	8	2	45	1.48
38796--38840	21	2.1	22	83	4	56	53	4	2	40	1.33
38981--39197	14	16.1	14	70	21	115	44	8	1	45	1.43
38968--39111	25	5.7	26	82	6	145	45	6	2	45	1.43
39165--39197	13	2.4	14	95	5	59	39	15	0	45	1.46
39160--39441	49	5.8	48	88	5	372	43	10	0	44	1.44
39160--39441	98	2.9	98	89	3	419	43	10	0	44	1.44
42419--42474	8	6.9	8	74	11	51	44	1	3	50	1.29
42752--42795	17	2.4	18	85	7	54	47	11	0	40	1.39
43220--43330	50	2.4	48	80	12	135	48	9	0	41	1.41
43304--43352	21	2.3	21	85	3	71	53	16	0	30	1.43
44049--44079	2	15.5	2	100	0	62	48	0	0	51	1.00
45752--45818	23	3.0	22	82	6	80	62	5	1	29	1.28
46705--46789	23	3.7	23	88	0	125	37	7	20	35	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46723--46923	110	1.8	109	90	1	321	41	11	13	33	1.80
46713--46896	23	8.2	23	71	10	112	41	10	14	33	1.80
47261--47494	87	2.7	86	82	4	276	39	9	4	45	1.58
47394--47428	17	2.0	18	88	5	54	40	5	5	48	1.51

Tables:   1

The End!