Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002990.1 Hibiscus syriacus cultivar Beakdansim tig00006184_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115380
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Found at i:6655 original size:15 final size:15
Alignment explanation
Indices: 6635--6664 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
6625 CTAAGTTTGC
6635 TTCATTCACAAACAT
1 TTCATTCACAAACAT
6650 TTCATTCACAAACAT
1 TTCATTCACAAACAT
6665 CAGTGTTAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.27, G:0.00, T:0.33
Consensus pattern (15 bp):
TTCATTCACAAACAT
Found at i:17025 original size:2 final size:2
Alignment explanation
Indices: 17014--17046 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
17004 TTAAGGAAAA
17014 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
17047 TTAGGGTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:17227 original size:19 final size:20
Alignment explanation
Indices: 17191--17230 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
17181 AAATAAAAAC
17191 TAAGTAAATATATATATTTA
1 TAAGTAAATATATATATTTA
17211 TAAGTAAGATAT-T-TATTTA
1 TAAGTAA-ATATATATATTTA
17230 T
1 T
17231 TTTTTAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.37
20 8 0.42
21 4 0.21
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.47
Consensus pattern (20 bp):
TAAGTAAATATATATATTTA
Found at i:17364 original size:2 final size:2
Alignment explanation
Indices: 17357--17388 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
17347 TGAATATTTC
17357 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
17389 TCATAGGACT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:17536 original size:15 final size:14
Alignment explanation
Indices: 17480--17542 Score: 58
Period size: 14 Copynumber: 4.4 Consensus size: 14
17470 AAAAATAATT
17480 TAAA-AAATAGAAAA
1 TAAATAAATA-AAAA
*
17494 TTAAAGT-AATAAAAT
1 -TAAA-TAAATAAAAA
*
17509 TAAATAACTAAAAA
1 TAAATAAATAAAAA
17523 TAAATAAATAAAAA
1 TAAATAAATAAAAA
17537 GTAAAT
1 -TAAAT
17543 GACATAAATT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
13 1 0.03
14 23 0.57
15 12 0.30
16 4 0.10
ACGTcount: A:0.70, C:0.02, G:0.05, T:0.24
Consensus pattern (14 bp):
TAAATAAATAAAAA
Found at i:17587 original size:33 final size:34
Alignment explanation
Indices: 17550--17628 Score: 117
Period size: 33 Copynumber: 2.4 Consensus size: 34
17540 AATGACATAA
*
17550 ATTAAACTATAAAGTAAAGG-ACTAAAAT-AAAAT
1 ATTAAAATATAAAGT-AAGGAACTAAAATAAAAAT
17583 ATTAAAATATAAAGTAAGGAACTAAAATAAAAAT
1 ATTAAAATATAAAGTAAGGAACTAAAATAAAAAT
*
17617 ATCAAAATATAA
1 ATTAAAATATAA
17629 TGCCCAAAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
32 4 0.10
33 22 0.52
34 16 0.38
ACGTcount: A:0.63, C:0.05, G:0.08, T:0.24
Consensus pattern (34 bp):
ATTAAAATATAAAGTAAGGAACTAAAATAAAAAT
Found at i:17588 original size:26 final size:26
Alignment explanation
Indices: 17524--17584 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
17514 AACTAAAAAT
* *
17524 AAAT-AAATAAAAAGTAAATGACATA
1 AAATAAAATATAAAGTAAAGGACATA
* *
17549 AATTAAACTATAAAGTAAAGGAC-TA
1 AAATAAAATATAAAGTAAAGGACATA
17574 AAATAAAATAT
1 AAATAAAATAT
17585 TAAAATATAA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
25 14 0.48
26 15 0.52
ACGTcount: A:0.64, C:0.05, G:0.08, T:0.23
Consensus pattern (26 bp):
AAATAAAATATAAAGTAAAGGACATA
Found at i:20431 original size:26 final size:25
Alignment explanation
Indices: 20383--20432 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
20373 TATTTATTGA
*
20383 TTTTTTTTATATTAACTTGCTGCTC
1 TTTTTTTTATATTAACTTCCTGCTC
20408 TTTTTTTTATTATTAA-TCTCCTGCT
1 TTTTTTTTA-TATTAACT-TCCTGCT
20433 TTAGTTCGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.16, C:0.16, G:0.06, T:0.62
Consensus pattern (25 bp):
TTTTTTTTATATTAACTTCCTGCTC
Found at i:21456 original size:47 final size:47
Alignment explanation
Indices: 21340--21800 Score: 562
Period size: 47 Copynumber: 10.0 Consensus size: 47
21330 AACAGAAATG
* * * * *
21340 TTGAAAACATCCAGCACTAAAGGTCTTATTGATGACCTGAAGAC--T
1 TTGAAAACATCCTGCACTGAAGGTCTTATAGATGACCCGAAGGCTTT
* * *
21385 TT---AACATCTTGCACTGAAGGTCTTACAGATGACCCAAAGGCTTT
1 TTGAAAACATCCTGCACTGAAGGTCTTATAGATGACCCGAAGGCTTT
*
21429 TTGAAAACATCCTGCACTGAAGGTCTTATACATGACCCGAAGGCTTT
1 TTGAAAACATCCTGCACTGAAGGTCTTATAGATGACCCGAAGGCTTT
* * *
21476 TTGAAATCATCCTGCACTGAAGGTCTTATGGATGATCCGAAGGCTTT
1 TTGAAAACATCCTGCACTGAAGGTCTTATAGATGACCCGAAGGCTTT
* * * * *
21523 TTGAAAATATCATGCACTGAAGGTCTTATGGATAACCCAAAGGCTTT
1 TTGAAAACATCCTGCACTGAAGGTCTTATAGATGACCCGAAGGCTTT
* * *
21570 TTGAAAACATTCTGCACTGAAGGTCTTATGGATGATCCGAAGGCTTT
1 TTGAAAACATCCTGCACTGAAGGTCTTATAGATGACCCGAAGGCTTT
* *
21617 TTGAAAACTTCCTGCATTGAAGGTCTTATAGATGACCCGAAGGCTTT
1 TTGAAAACATCCTGCACTGAAGGTCTTATAGATGACCCGAAGGCTTT
*
21664 TTGAAAACATCCTGCACTGAAGGTCTTATGGATGACCCGAAGG--TT
1 TTGAAAACATCCTGCACTGAAGGTCTTATAGATGACCCGAAGGCTTT
* * * *
21709 TTGATAACATCATGCACTGAAGGTCTTACAGATGACTCGAAGG--TT
1 TTGAAAACATCCTGCACTGAAGGTCTTATAGATGACCCGAAGGCTTT
** * * * *
21754 TTGAAAACATTATGCACTAAAAGTCTTACAGATGACCCGAAGACTTT
1 TTGAAAACATCCTGCACTGAAGGTCTTATAGATGACCCGAAGGCTTT
21801 GAAAATATCA
Statistics
Matches: 362, Mismatches: 47, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
42 31 0.09
44 3 0.01
45 81 0.22
47 247 0.68
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (47 bp):
TTGAAAACATCCTGCACTGAAGGTCTTATAGATGACCCGAAGGCTTT
Found at i:21878 original size:76 final size:76
Alignment explanation
Indices: 21752--21954 Score: 307
Period size: 76 Copynumber: 2.7 Consensus size: 76
21742 GACTCGAAGG
* * * * *
21752 TTTTGAAAACATTATGCACTAAAAGTCTTACAGATGACCCGAAGACTTTGAAAATATCAAAAAGC
1 TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAATATCAAAAAGC
21817 TCCCGAAGGCT
66 TCCCGAAGGCT
21828 TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAATATCAAAAAGC
1 TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAATATCAAAAAGC
* *
21893 TCCTGAAGGTT
66 TCCCGAAGGCT
** * *
21904 TTTTTTAAACATCATGCACTGAAGGGCTTACAGATGACCTGAAGGTTTTGA
1 TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGA
21955 TAACATTATG
Statistics
Matches: 116, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
76 116 1.00
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.27
Consensus pattern (76 bp):
TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAATATCAAAAAGC
TCCCGAAGGCT
Found at i:21947 original size:47 final size:46
Alignment explanation
Indices: 21894--22005 Score: 165
Period size: 45 Copynumber: 2.5 Consensus size: 46
21884 TCAAAAAGCT
**
21894 CCTGAAGGTTTTTTTTAAACATCATGCACTGAAGGGCTTACAGATGA
1 CCTGAAGGTTTTTGAT-AACATCATGCACTGAAGGGCTTACAGATGA
*
21941 CCTGAAGG-TTTTGATAACATTATGCACTGAAGGGCTTACAGATGA
1 CCTGAAGGTTTTTGATAACATCATGCACTGAAGGGCTTACAGATGA
*
21986 CCCGAAGG-TTTTGATAACAT
1 CCTGAAGGTTTTTGATAACAT
22006 AAAAAAGCTC
Statistics
Matches: 61, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
45 48 0.79
46 5 0.08
47 8 0.13
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.30
Consensus pattern (46 bp):
CCTGAAGGTTTTTGATAACATCATGCACTGAAGGGCTTACAGATGA
Found at i:21953 original size:121 final size:121
Alignment explanation
Indices: 21828--22128 Score: 424
Period size: 121 Copynumber: 2.5 Consensus size: 121
21818 CCCGAAGGCT
*
21828 TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAATATCAAAAAGC
1 TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAATATCAAAAAGC
* * ** *
21893 TCCTGAAGGTTTTTTTTAAACATCATGCACTGAAGGGCTTACAGATGAC-CTGAAGG
66 TCCCGAAGGCTTTTTGAAAACACCATGCACTGAAGGGCTTACAGATGACGC-GAAGG
* * * * *
21949 TTTTGATAACATTATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGATAACATAAAAAAGC
1 TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAATATCAAAAAGC
* * * **
22014 TCCCGAAGGCTTTTTGAAAACACCCTGCACTGTAGGTCTTATGGATGACGCGAAGG
66 TCCCGAAGGCTTTTTGAAAACACCATGCACTGAAGGGCTTACAGATGACGCGAAGG
* *
22070 TTTCGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAATGTTTTGAAAATATCA
1 TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAATATCA
22129 TGCACTGAAG
Statistics
Matches: 156, Mismatches: 23, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
121 155 0.99
122 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.27
Consensus pattern (121 bp):
TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAATATCAAAAAGC
TCCCGAAGGCTTTTTGAAAACACCATGCACTGAAGGGCTTACAGATGACGCGAAGG
Found at i:21968 original size:45 final size:45
Alignment explanation
Indices: 21911--22005 Score: 172
Period size: 45 Copynumber: 2.1 Consensus size: 45
21901 GTTTTTTTTA
*
21911 AACATCATGCACTGAAGGGCTTACAGATGACCTGAAGGTTTTGAT
1 AACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAT
*
21956 AACATTATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAT
1 AACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAT
22001 AACAT
1 AACAT
22006 AAAAAAGCTC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (45 bp):
AACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAT
Found at i:22088 original size:45 final size:45
Alignment explanation
Indices: 22015--22195 Score: 254
Period size: 45 Copynumber: 4.0 Consensus size: 45
22005 TAAAAAAGCT
* * * * **
22015 CCCGAAGGCTTTTTGAAAACACCCTGCACTGTAGGTCTTATGGATGA
1 CCCGAAGG--TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGA
* *
22062 CGCGAAGGTTTCGAAAACATCATGCACTGAAGGGCTTACAGATGA
1 CCCGAAGGTTTTGAAAACATCATGCACTGAAGGGCTTACAGATGA
* *
22107 CCCGAATGTTTTGAAAATATCATGCACTGAAGGGCTTACAGATGA
1 CCCGAAGGTTTTGAAAACATCATGCACTGAAGGGCTTACAGATGA
22152 CCCGAAGGTTTTGAAAACATCATGCACTGAAGGGCTTACAGATG
1 CCCGAAGGTTTTGAAAACATCATGCACTGAAGGGCTTACAGATG
22196 TGAGAAATAG
Statistics
Matches: 120, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
45 113 0.94
47 7 0.06
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.24
Consensus pattern (45 bp):
CCCGAAGGTTTTGAAAACATCATGCACTGAAGGGCTTACAGATGA
Found at i:22872 original size:22 final size:22
Alignment explanation
Indices: 22847--22898 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
22837 AATAAAGCTT
22847 TCATCTTTGAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
*
22869 TCATCTTTGAAGAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
22891 TCATCTTT
1 TCATCTTT
22899 AAAGAATGTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:23676 original size:27 final size:27
Alignment explanation
Indices: 23637--23699 Score: 117
Period size: 27 Copynumber: 2.3 Consensus size: 27
23627 CTTGATGTTG
23637 TAGATGAAACGCACATGATAAACAAAA
1 TAGATGAAACGCACATGATAAACAAAA
*
23664 TAGATGAATCGCACATGATAAACAAAA
1 TAGATGAAACGCACATGATAAACAAAA
23691 TAGATGAAA
1 TAGATGAAA
23700 ACTCAGTTCA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.54, C:0.13, G:0.16, T:0.17
Consensus pattern (27 bp):
TAGATGAAACGCACATGATAAACAAAA
Found at i:26785 original size:15 final size:16
Alignment explanation
Indices: 26765--26807 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 16
26755 ATTCAATTTA
26765 TTTTCTTTCTTTCTT-
1 TTTTCTTTCTTTCTTC
26780 TTTTCTTTCTTT-TTC
1 TTTTCTTTCTTTCTTC
26795 TTTTCTTT-TTTCT
1 TTTTCTTTCTTTCT
26808 GATGAATGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
14 5 0.19
15 21 0.81
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTTCTTTCTTTCTTC
Found at i:26786 original size:11 final size:11
Alignment explanation
Indices: 26770--26807 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
26760 ATTTATTTTC
26770 TTTCTTTCTTT
1 TTTCTTTCTTT
26781 TTTCTTTC-TT
1 TTTCTTTCTTT
26791 TTTCTTTTCTTT
1 TTTC-TTTCTTT
26803 TTTCT
1 TTTCT
26808 GATGAATGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 6 0.24
11 13 0.52
12 6 0.24
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (11 bp):
TTTCTTTCTTT
Found at i:32285 original size:2 final size:2
Alignment explanation
Indices: 32274--32329 Score: 105
Period size: 2 Copynumber: 28.5 Consensus size: 2
32264 TTAAGGAAAA
32274 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32315 AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT A
32330 GGGTTTTGTA
Statistics
Matches: 53, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 52 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32768 original size:14 final size:14
Alignment explanation
Indices: 32751--32789 Score: 62
Period size: 14 Copynumber: 2.8 Consensus size: 14
32741 TAAAAATAGA
32751 AAATTAAAGTAA-TG
1 AAATTAAA-TAACTG
32765 AAATTAAATAACTG
1 AAATTAAATAACTG
32779 AAATTAAATAA
1 AAATTAAATAA
32790 ATAAAAAGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 3 0.12
14 21 0.88
ACGTcount: A:0.62, C:0.03, G:0.08, T:0.28
Consensus pattern (14 bp):
AAATTAAATAACTG
Found at i:32848 original size:33 final size:33
Alignment explanation
Indices: 32810--32877 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 33
32800 AATGACATAA
*
32810 ATTAAAATATAGAGTAAAGG-ACTAAAATAAAAG
1 ATTAAAATATAAAGT-AAGGAACTAAAATAAAAG
32843 ATTAAAATATAAAGTAAGGAACTAAAATAAAAG
1 ATTAAAATATAAAGTAAGGAACTAAAATAAAAG
32876 AT
1 AT
32878 ATCAGAATAT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
32 4 0.12
33 29 0.88
ACGTcount: A:0.62, C:0.03, G:0.13, T:0.22
Consensus pattern (33 bp):
ATTAAAATATAAAGTAAGGAACTAAAATAAAAG
Found at i:33595 original size:12 final size:12
Alignment explanation
Indices: 33580--33604 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
33570 AATTGAAAAA
33580 AAACTATAACAG
1 AAACTATAACAG
33592 AAACTATAACAG
1 AAACTATAACAG
33604 A
1 A
33605 TCCAAAGGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAACTATAACAG
Found at i:34398 original size:18 final size:17
Alignment explanation
Indices: 34377--34419 Score: 54
Period size: 15 Copynumber: 2.6 Consensus size: 17
34367 TCACTATTGG
*
34377 CATCATCTTCATCTTTGT
1 CATCATCTTC-TCGTTGT
34395 CATCATC--CTCGTTGT
1 CATCATCTTCTCGTTGT
34410 CATCATCTTC
1 CATCATCTTC
34420 GTCACCGTCG
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
15 13 0.59
16 1 0.05
17 1 0.05
18 7 0.32
ACGTcount: A:0.16, C:0.33, G:0.07, T:0.44
Consensus pattern (17 bp):
CATCATCTTCTCGTTGT
Found at i:34633 original size:19 final size:19
Alignment explanation
Indices: 34609--34648 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
34599 TTTCACACTT
34609 GGTAGTAGTGGTGTTTATA
1 GGTAGTAGTGGTGTTTATA
34628 GGTAGTAGTGGTGTTTATA
1 GGTAGTAGTGGTGTTTATA
34647 GG
1 GG
34649 GGATTACATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.20, C:0.00, G:0.40, T:0.40
Consensus pattern (19 bp):
GGTAGTAGTGGTGTTTATA
Found at i:36285 original size:19 final size:19
Alignment explanation
Indices: 36241--36286 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
36231 CTCAAGAATG
*
36241 TAAGGCCTTTTCAATTCCT
1 TAAGGCTTTTTCAATTCCT
36260 TAAGGCTTTTTCAATTCCT
1 TAAGGCTTTTTCAATTCCT
36279 TAAGGCTT
1 TAAGGCTT
36287 ATACCTAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.22, C:0.22, G:0.13, T:0.43
Consensus pattern (19 bp):
TAAGGCTTTTTCAATTCCT
Found at i:61125 original size:31 final size:31
Alignment explanation
Indices: 61090--61160 Score: 108
Period size: 31 Copynumber: 2.3 Consensus size: 31
61080 AAATAATAAT
61090 GTTTCTAACGTCAAGG-GTCTAAAGTGGTTAC
1 GTTTCTAACGTC-AGGTGTCTAAAGTGGTTAC
*
61121 GTTTCTAACTTCAGGTGTCTAAAGTGGTTAC
1 GTTTCTAACGTCAGGTGTCTAAAGTGGTTAC
*
61152 GTTTATAAC
1 GTTTCTAAC
61161 TTTAGGCACC
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
30 3 0.08
31 34 0.92
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.37
Consensus pattern (31 bp):
GTTTCTAACGTCAGGTGTCTAAAGTGGTTAC
Found at i:65313 original size:21 final size:20
Alignment explanation
Indices: 65287--65382 Score: 79
Period size: 20 Copynumber: 4.8 Consensus size: 20
65277 ATCAGTTTCC
65287 AAAATCGCAACGCGATTCTTG
1 AAAATCGCAACGCGATT-TTG
* **
65308 AAAATCGCAATGCGATAGT-
1 AAAATCGCAACGCGATTTTG
* * *
65327 ACAATTCGC-ATGCGATTTTCC
1 A-AAATCGCAACGCGATTTT-G
* *
65348 AAAATCGCAACGCGAATATG
1 AAAATCGCAACGCGATTTTG
65368 AAAATCGCAACGCGA
1 AAAATCGCAACGCGA
65383 ACACATAAAT
Statistics
Matches: 60, Mismatches: 11, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
19 9 0.15
20 28 0.47
21 23 0.38
ACGTcount: A:0.38, C:0.23, G:0.19, T:0.21
Consensus pattern (20 bp):
AAAATCGCAACGCGATTTTG
Found at i:65411 original size:20 final size:20
Alignment explanation
Indices: 65349--65637 Score: 275
Period size: 20 Copynumber: 14.5 Consensus size: 20
65339 CGATTTTCCA
* ** *
65349 AAATCGCAACGCGAATATGA
1 AAATCGCAACGCGTATCCGT
* *
65369 AAATCGCAACGCG-AACACAT
1 AAATCGCAACGCGTATC-CGT
65389 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
65409 AAATCGCAACGTGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
65429 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
65449 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
65469 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
65489 AAATCGCAACG-ATAATCCGT
1 AAATCGCAACGCGT-ATCCGT
* * *
65509 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGTATCCGT
*
65529 AAATCGCAACG-ATAATCCGT
1 AAATCGCAACGCGT-ATCCGT
*
65549 AAATCGCAACG-ATAATCCGT
1 AAATCGCAACGCGT-ATCCGT
* * *
65569 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGTATCCGT
*
65589 AAATCGCAACG-ATAAT-CGT
1 AAATCGCAACGCGT-ATCCGT
* * *
65608 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGTATCCGT
*
65628 AAATCACAAC
1 AAATCGCAAC
65638 ACTGAAATTT
Statistics
Matches: 228, Mismatches: 32, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
19 17 0.07
20 209 0.92
21 2 0.01
ACGTcount: A:0.37, C:0.25, G:0.18, T:0.20
Consensus pattern (20 bp):
AAATCGCAACGCGTATCCGT
Found at i:65413 original size:60 final size:60
Alignment explanation
Indices: 65349--65637 Score: 312
Period size: 60 Copynumber: 4.8 Consensus size: 60
65339 CGATTTTCCA
** * * * * *
65349 AAATCGCAACGCGAATATGAAAATCGCAACGCGAA-CACATAAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGAATCCGTAAATCGCAACGAGAATC-CGTAAATCGCAACGAGAATCCGT
* * * * * * * *
65409 AAATCGCAACGTGTATCCGTATATCGCAACGCGTATCCGTAAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGAATCCGTAAATCGCAACGAGAATCCGTAAATCGCAACGAGAATCCGT
* * * *
65469 ATATCGCAACGCGTATCCGTAAATCGCAACGATAATCCGTAAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGAATCCGTAAATCGCAACGAGAATCCGTAAATCGCAACGAGAATCCGT
** * *
65529 AAATCGCAACGATAATCCGTAAATCGCAACGATAATCCGTAAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGAATCCGTAAATCGCAACGAGAATCCGTAAATCGCAACGAGAATCCGT
** * *
65589 AAATCGCAACGATAAT-CGTAAATCGCAACGAGAATCTGTAAATCACAAC
1 AAATCGCAACGCGAATCCGTAAATCGCAACGAGAATCCGTAAATCGCAAC
65638 ACTGAAATTT
Statistics
Matches: 202, Mismatches: 26, Indels: 3
0.87 0.11 0.01
Matches are distributed among these distances:
59 30 0.15
60 171 0.85
61 1 0.00
ACGTcount: A:0.37, C:0.25, G:0.18, T:0.20
Consensus pattern (60 bp):
AAATCGCAACGCGAATCCGTAAATCGCAACGAGAATCCGTAAATCGCAACGAGAATCCGT
Found at i:66516 original size:24 final size:24
Alignment explanation
Indices: 66489--66535 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
66479 GAAATTGGTC
66489 TTGGTCAATATC-CGGACTTTGATA
1 TTGGTCAATA-CACGGACTTTGATA
*
66513 TTGGTCAATACACGGATTTTGAT
1 TTGGTCAATACACGGACTTTGAT
66536 GATGTTTCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
TTGGTCAATACACGGACTTTGATA
Found at i:69006 original size:19 final size:19
Alignment explanation
Indices: 68938--69123 Score: 201
Period size: 19 Copynumber: 10.7 Consensus size: 19
68928 GCAACGAGAG
68938 AATCGCAATGCGAAATG-A
1 AATCGCAATGCGAAATGAA
*
68956 AATCCCAA--C---ATGAA
1 AATCGCAATGCGAAATGAA
68970 AATCGCAATGCGGAAATGAA
1 AATCGCAATGC-GAAATGAA
68990 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
69009 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
69028 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
69042 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
69061 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
69080 AATCGCAA--CG--A-G--
1 AATCGCAATGCGAAATGAA
*
69092 AATCGCAATGCGAAATTAA
1 AATCGCAATGCGAAATGAA
*
69111 AATCGCATTGCGA
1 AATCGCAATGCGA
69124 TTCTCCCGTT
Statistics
Matches: 143, Mismatches: 6, Indels: 37
0.77 0.03 0.20
Matches are distributed among these distances:
12 8 0.06
13 3 0.02
14 21 0.15
15 2 0.01
16 5 0.03
17 4 0.03
18 8 0.06
19 76 0.53
20 16 0.11
ACGTcount: A:0.45, C:0.18, G:0.21, T:0.16
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:69020 original size:71 final size:71
Alignment explanation
Indices: 68938--69087 Score: 250
Period size: 71 Copynumber: 2.1 Consensus size: 71
68928 GCAACGAGAG
68938 AATCGCAATGCGAAATG-AAATCCCAAC-ATGAAAATCGCAATGCGGAAATGAAAATCGCAATGC
1 AATCGCAATGCGAAATGAAAATCCCAACGA-GAAAATCGCAATGC-GAAATGAAAATCGCAATGC
69001 GAAATGAA
64 GAAATGAA
* *
69009 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGA
1 AATCGCAATGCGAAATGAAAATCCCAACGAGAAAATCGCAATGCGAAATGAAAATCGCAATGCGA
69074 AATGAA
66 AATGAA
69080 AATCGCAA
1 AATCGCAA
69088 CGAGAATCGC
Statistics
Matches: 75, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
71 52 0.69
72 22 0.29
73 1 0.01
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.15
Consensus pattern (71 bp):
AATCGCAATGCGAAATGAAAATCCCAACGAGAAAATCGCAATGCGAAATGAAAATCGCAATGCGA
AATGAA
Found at i:69046 original size:52 final size:52
Alignment explanation
Indices: 68924--69123 Score: 254
Period size: 52 Copynumber: 3.9 Consensus size: 52
68914 ACGGAATTAC
*
68924 AATCGCAACGAGAGAATCGCAATGCGAAATG-AAATCCCAA--C---ATGAA
1 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
*
68970 AATCGCAATGCGGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAA--C-G--A-GAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
69028 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
* *
69080 AATCGCAAC--GAGAATCGCAATGCGAAATTAAAATCGCATTGCGA
1 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGA
69124 TTCTCCCGTT
Statistics
Matches: 137, Mismatches: 5, Indels: 20
0.85 0.03 0.12
Matches are distributed among these distances:
46 8 0.06
48 1 0.01
49 1 0.01
50 33 0.24
51 1 0.01
52 68 0.50
53 9 0.07
55 2 0.01
56 1 0.01
58 13 0.09
ACGTcount: A:0.45, C:0.18, G:0.21, T:0.15
Consensus pattern (52 bp):
AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
Found at i:69051 original size:33 final size:34
Alignment explanation
Indices: 68924--69087 Score: 192
Period size: 33 Copynumber: 4.7 Consensus size: 34
68914 ACGGAATTAC
*
68924 AATCGCAACGA-GAGAATCGCAATGCGAAATG-A
1 AATCGCAACGATGAAAATCGCAATGCGAAATGAA
*
68956 AATCCCAAC-ATGAAAATCGCAATGCGGAAATGAA
1 AATCGCAACGATGAAAATCGCAATGC-GAAATGAA
68990 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAA--CG--ATGAAAATCGCAATGCGAAATGAA
*
69028 AATCGCAACGA-GAGAATCGCAATGCGAAATGAA
1 AATCGCAACGATGAAAATCGCAATGCGAAATGAA
69061 AATCGCAATGCGAAATGAAAATCGCAA
1 AATCGCAA--CG--ATGAAAATCGCAA
69088 CGAGAATCGC
Statistics
Matches: 114, Mismatches: 5, Indels: 20
0.82 0.04 0.14
Matches are distributed among these distances:
31 1 0.01
32 21 0.18
33 35 0.31
34 9 0.08
35 2 0.02
36 3 0.03
37 1 0.01
38 26 0.23
39 16 0.14
ACGTcount: A:0.46, C:0.18, G:0.21, T:0.14
Consensus pattern (34 bp):
AATCGCAACGATGAAAATCGCAATGCGAAATGAA
Found at i:69151 original size:33 final size:32
Alignment explanation
Indices: 69113--69260 Score: 129
Period size: 33 Copynumber: 4.4 Consensus size: 32
69103 GAAATTAAAA
* *
69113 TCGCATTGCGATTCTCCCGTTGCGATTTCATT
1 TCGCATTGCGATTCTCTCATTGCGATTTCATT
* *
69145 TCCGCATTGCGATT-T-TCATTTCGCATTGCGATT
1 T-CGCATTGCGATTCTCTCATTGCG-ATTTC-ATT
* * *
69178 CTCTCGTTGCGATTTCATTTCGCATTGCGATTTCATT
1 -TCGCATTGCGA-TTC---TCTCATTGCGATTTCATT
*
69215 TCGCATTGCGATTCTCTCGTTGCGATTTTCATT
1 TCGCATTGCGATTCTCTCATTGCGA-TTTCATT
69248 TCGCATTGCGATT
1 TCGCATTGCGATT
69261 TTCATTCGCA
Statistics
Matches: 92, Mismatches: 13, Indels: 21
0.73 0.10 0.17
Matches are distributed among these distances:
31 5 0.05
32 15 0.16
33 43 0.47
34 3 0.03
35 3 0.03
36 9 0.10
37 3 0.03
38 5 0.05
39 6 0.07
ACGTcount: A:0.14, C:0.25, G:0.18, T:0.43
Consensus pattern (32 bp):
TCGCATTGCGATTCTCTCATTGCGATTTCATT
Found at i:69156 original size:19 final size:18
Alignment explanation
Indices: 69132--69277 Score: 175
Period size: 18 Copynumber: 8.4 Consensus size: 18
69122 GATTCTCCCG
69132 TTGCGATTTCATTTCCGCA
1 TTGCGATTTCATTT-CGCA
69151 TTGCGATTTTCATTTCGCA
1 TTGCGA-TTTCATTTCGCA
*
69170 TTGCGA-TTC-TCTCG--
1 TTGCGATTTCATTTCGCA
69184 TTGCGATTTCATTTCGCA
1 TTGCGATTTCATTTCGCA
69202 TTGCGATTTCATTTCGCA
1 TTGCGATTTCATTTCGCA
*
69220 TTGCGA-TTC-TCTCG--
1 TTGCGATTTCATTTCGCA
69234 TTGCGATTTTCATTTCGCA
1 TTGCGA-TTTCATTTCGCA
69253 TTGCGATTTTCA-TTCGCA
1 TTGCGA-TTTCATTTCGCA
69271 TTGCGAT
1 TTGCGAT
69278 AGTCAATTTT
Statistics
Matches: 113, Mismatches: 4, Indels: 22
0.81 0.03 0.16
Matches are distributed among these distances:
14 12 0.11
15 3 0.03
16 15 0.13
17 11 0.10
18 36 0.32
19 28 0.25
20 8 0.07
ACGTcount: A:0.14, C:0.23, G:0.18, T:0.45
Consensus pattern (18 bp):
TTGCGATTTCATTTCGCA
Found at i:69245 original size:51 final size:51
Alignment explanation
Indices: 69113--69277 Score: 289
Period size: 51 Copynumber: 3.2 Consensus size: 51
69103 GAAATTAAAA
*
69113 TCGCATTGCGATTCTCCCGTTGCGATTTCATTTCCGCATTGCGATTTTCATT
1 TCGCATTGCGATTCTCTCGTTGCGATTTCATTT-CGCATTGCGATTTTCATT
69165 TCGCATTGCGATTCTCTCGTTGCGATTTCATTTCGCATTGCGA-TTTCATT
1 TCGCATTGCGATTCTCTCGTTGCGATTTCATTTCGCATTGCGATTTTCATT
69215 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCA-T
1 TCGCATTGCGATTCTCTCGTTGCGA-TTTCATTTCGCATTGCGATTTTCATT
69266 TCGCATTGCGAT
1 TCGCATTGCGAT
69278 AGTCAATTTT
Statistics
Matches: 110, Mismatches: 1, Indels: 5
0.95 0.01 0.04
Matches are distributed among these distances:
50 32 0.29
51 41 0.37
52 37 0.34
ACGTcount: A:0.14, C:0.25, G:0.18, T:0.43
Consensus pattern (51 bp):
TCGCATTGCGATTCTCTCGTTGCGATTTCATTTCGCATTGCGATTTTCATT
Found at i:69257 original size:69 final size:70
Alignment explanation
Indices: 69132--69277 Score: 176
Period size: 69 Copynumber: 2.1 Consensus size: 70
69122 GATTCTCCCG
* * *
69132 TTGCGATTTCATTTCCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGA-TTTCAT
1 TTGCGATTTCATTTCCGCATTGCGATTTTCATTGCGCATTGCGATTCTCGCATTGCGATTTTCA-
69196 TTCGCA
65 TTCGCA
* *
69202 TTGCGATTTCATTT-CGCATTGCGATTCTCTCGTTGCG-ATTTTC-ATT-TCGCATTGCGATTTT
1 TTGCGATTTCATTTCCGCATTGCGATT-T-TCATTGCGCA-TTGCGATTCTCGCATTGCGATTTT
69263 CATTCGCA
63 CATTCGCA
69271 TTGCGAT
1 TTGCGAT
69278 AGTCAATTTT
Statistics
Matches: 67, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
69 34 0.51
70 24 0.36
71 9 0.13
ACGTcount: A:0.14, C:0.23, G:0.18, T:0.45
Consensus pattern (70 bp):
TTGCGATTTCATTTCCGCATTGCGATTTTCATTGCGCATTGCGATTCTCGCATTGCGATTTTCAT
TCGCA
Found at i:69402 original size:14 final size:14
Alignment explanation
Indices: 69383--69419 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
69373 CATCAATTAC
69383 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
69397 ACAAATCATCTTTT
1 ACAAATCAACTTTT
69411 ACAAATCAA
1 ACAAATCAA
69420 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:71429 original size:19 final size:19
Alignment explanation
Indices: 71335--71468 Score: 110
Period size: 19 Copynumber: 7.6 Consensus size: 19
71325 TAGTTTACTT
* *
71335 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
**
71355 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
71374 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
* *
71393 TCGTAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
*
71407 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
71426 TCGCAA--CG-AA-G--AA
1 TCGCAACGCGAAATGAAAA
71439 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
71458 TCGCAATGCGA
1 TCGCAACGCGA
71469 TTTTGGTTTC
Statistics
Matches: 93, Mismatches: 10, Indels: 23
0.74 0.08 0.18
Matches are distributed among these distances:
13 8 0.09
14 7 0.08
15 3 0.03
16 9 0.10
17 8 0.09
19 46 0.49
20 12 0.13
ACGTcount: A:0.46, C:0.23, G:0.19, T:0.12
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:71444 original size:32 final size:33
Alignment explanation
Indices: 71372--71463 Score: 159
Period size: 32 Copynumber: 2.8 Consensus size: 33
71362 GCGAAACCAA
*
71372 AATCGCAACGCGAAATGAAAATCGTAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGACAG
*
71405 AATCGCAATGCGAAATGAAAATCGCAACGA-AG
1 AATCGCAACGCGAAATGAAAATCGCAACGACAG
71437 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
71464 TGCGATTTTG
Statistics
Matches: 56, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
32 28 0.50
33 28 0.50
ACGTcount: A:0.47, C:0.21, G:0.21, T:0.12
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGACAG
Found at i:71486 original size:19 final size:19
Alignment explanation
Indices: 71464--71592 Score: 116
Period size: 19 Copynumber: 7.3 Consensus size: 19
71454 AAAATCGCAA
71464 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
71483 TGCGATCTT-G--T--CAT
1 TGCGATTTTGGTTTCGCGT
71497 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
71516 TGCGATTCT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
71530 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
71549 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
71568 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
71588 TGCGA
1 TGCGA
71593 AAGTAAACTA
Statistics
Matches: 88, Mismatches: 11, Indels: 21
0.73 0.09 0.17
Matches are distributed among these distances:
14 21 0.24
15 1 0.01
16 2 0.02
17 2 0.02
18 2 0.02
19 47 0.53
20 13 0.15
ACGTcount: A:0.09, C:0.17, G:0.28, T:0.46
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:71506 original size:33 final size:33
Alignment explanation
Indices: 71464--71555 Score: 141
Period size: 33 Copynumber: 2.8 Consensus size: 33
71454 AAAATCGCAA
71464 TGCGATTTTGGTTTCGCGTTGCGA-TCTTGTCAT
1 TGCGATTTTGGTTTCGCGTTGCGATTC-TGTCAT
*
71497 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCAT
**
71530 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
71556 TTGGTTTCGC
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
33 53 0.96
34 2 0.04
ACGTcount: A:0.09, C:0.18, G:0.27, T:0.46
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTCTGTCAT
Found at i:71909 original size:92 final size:93
Alignment explanation
Indices: 71640--72013 Score: 718
Period size: 92 Copynumber: 4.1 Consensus size: 93
71630 ATGGATTGCA
71640 TTAC-TTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
71704 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
71732 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
71797 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
71825 TTACTTTCAACCAAAAGAC-AAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
71889 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
71917 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTG-TAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
*
71981 TAGCAGAATTGGCAGCAACCGAATAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
72009 TTACT
1 TTACT
72014 AAGCAATCTA
Statistics
Matches: 279, Mismatches: 1, Indels: 4
0.98 0.00 0.01
Matches are distributed among these distances:
92 144 0.52
93 135 0.48
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (93 bp):
TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
TAGCAGAATTGGCAGCAACCGAACAAAT
Found at i:73738 original size:14 final size:14
Alignment explanation
Indices: 73719--73808 Score: 72
Period size: 14 Copynumber: 5.7 Consensus size: 14
73709 TTGAAATGAA
73719 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
73733 AATCGCAACGCGAAATGAC
1 AATCGCAA--CG--A-GAG
73752 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
73766 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
73785 AATCGCAACGAGAG
1 AATCGCAACGAGAG
73799 AATCGCAACG
1 AATCGCAACG
73809 CGAAATGAAA
Statistics
Matches: 62, Mismatches: 4, Indels: 20
0.72 0.05 0.23
Matches are distributed among these distances:
14 30 0.48
15 2 0.03
16 4 0.06
17 4 0.06
18 2 0.03
19 20 0.32
ACGTcount: A:0.43, C:0.23, G:0.24, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:73750 original size:33 final size:33
Alignment explanation
Indices: 73711--73825 Score: 221
Period size: 33 Copynumber: 3.5 Consensus size: 33
73701 TCTTTTGGTT
73711 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
*
73744 GAAATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
73777 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
73810 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
73826 TGCGATTTTG
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 80 1.00
ACGTcount: A:0.46, C:0.21, G:0.23, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:73757 original size:19 final size:19
Alignment explanation
Indices: 73733--73830 Score: 90
Period size: 19 Copynumber: 5.7 Consensus size: 19
73723 GCAACGAGAG
*
73733 AATCGCAACGCGAAATGAC
1 AATCGCAACGCGAAATGAA
*
73752 AATCGCAA--CG--A-GAG
1 AATCGCAACGCGAAATGAA
73766 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
*
73785 AATCGCAA--CG--A-GAG
1 AATCGCAACGCGAAATGAA
73799 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
*
73818 AATCGCAATGCGA
1 AATCGCAACGCGA
73831 TTTTGGTTTC
Statistics
Matches: 64, Mismatches: 5, Indels: 20
0.72 0.06 0.22
Matches are distributed among these distances:
14 20 0.31
15 2 0.03
16 4 0.06
17 4 0.06
18 2 0.03
19 32 0.50
ACGTcount: A:0.44, C:0.22, G:0.23, T:0.10
Consensus pattern (19 bp):
AATCGCAACGCGAAATGAA
Found at i:73861 original size:14 final size:14
Alignment explanation
Indices: 73842--73898 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
73832 TTTGGTTTCG
73842 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
73856 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
73875 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
73889 CGTTGCGATT
1 CGTTGCGATT
73899 GTCATTTCGC
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
16 3 0.08
17 3 0.08
19 10 0.28
ACGTcount: A:0.09, C:0.25, G:0.23, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:73880 original size:19 final size:19
Alignment explanation
Indices: 73856--73944 Score: 80
Period size: 19 Copynumber: 4.9 Consensus size: 19
73846 GCGATTCTCT
73856 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
73875 CGTTGCGA--TTC---TCT
1 CGTTGCGATTTTCATTTCG
*
73889 CGTTGCGATTGTCATTTCG
1 CGTTGCGATTTTCATTTCG
*** *
73908 CGTTGCGACAGTCATTCTCT
1 CGTTGCGATTTTCATT-TCG
73928 CGTTGCGATTTTCATTT
1 CGTTGCGATTTTCATTT
73945 ATCTCGTTGC
Statistics
Matches: 55, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
14 10 0.18
16 2 0.04
17 3 0.05
19 25 0.45
20 15 0.27
ACGTcount: A:0.11, C:0.24, G:0.21, T:0.44
Consensus pattern (19 bp):
CGTTGCGATTTTCATTTCG
Found at i:73936 original size:39 final size:33
Alignment explanation
Indices: 73826--73944 Score: 157
Period size: 33 Copynumber: 3.4 Consensus size: 33
73816 AAAATCGCAA
**
73826 TGCGATTTTGGTTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
73859 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
*
73892 TGCGATTGTCATTTCGCGTTGCGACAGTCATTCTCTCGT
1 TGCGATTTTCATTTCGCGTT--G-C-G--ATTCTCTCGT
73931 TGCGATTTTCATTT
1 TGCGATTTTCATTT
73945 ATCTCGTTGC
Statistics
Matches: 76, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
33 50 0.66
35 1 0.01
36 1 0.01
37 1 0.01
39 23 0.30
ACGTcount: A:0.10, C:0.23, G:0.23, T:0.45
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
Found at i:74078 original size:33 final size:33
Alignment explanation
Indices: 74036--74106 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
74026 AATACTAACT
*
74036 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
* *
74069 TGAAAATCGCAACGACAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
74102 TGAAA
1 TGAAA
74107 TCTAAGTGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.48, C:0.18, G:0.23, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAAA
Found at i:74513 original size:20 final size:20
Alignment explanation
Indices: 74488--74621 Score: 164
Period size: 20 Copynumber: 6.7 Consensus size: 20
74478 CTTTAAATAT
74488 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
74508 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
*
74530 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
74549 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
*
74569 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
74589 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
74609 CGCGTTGCGATTT
1 CGCGTTGCGATTT
74622 TTCATATTCG
Statistics
Matches: 98, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
19 2 0.02
20 79 0.81
21 15 0.15
22 2 0.02
ACGTcount: A:0.19, C:0.18, G:0.28, T:0.36
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:74615 original size:40 final size:40
Alignment explanation
Indices: 74487--74621 Score: 182
Period size: 40 Copynumber: 3.4 Consensus size: 40
74477 GCTTTAAATA
*
74487 TCGCGTTGCGATTTACGGATACGCGTTGCGATTTTATGTAT
1 TCGCGTTGCGATTTACGGATACGCGTTGCGA-TTTATGTGT
** * *
74528 TATCGTTGCGATTTACGGATACGCGTTGCGATATACG-GAT
1 TCGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTG-T
* *
74568 ACACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGT
1 TCGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTGT
74608 TCGCGTTGCGATTT
1 TCGCGTTGCGATTT
74622 TTCATATTCG
Statistics
Matches: 80, Mismatches: 12, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
40 50 0.62
41 30 0.38
ACGTcount: A:0.19, C:0.18, G:0.27, T:0.36
Consensus pattern (40 bp):
TCGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTGT
Found at i:74633 original size:21 final size:20
Alignment explanation
Indices: 74589--74643 Score: 74
Period size: 21 Copynumber: 2.7 Consensus size: 20
74579 TTTACGGATA
* * *
74589 CGCGTTGCGATTTATGTGTT
1 CGCGTTGCGATTTTTATATT
74609 CGCGTTGCGATTTTTCATATT
1 CGCGTTGCGATTTTT-ATATT
74630 CGCGTTGCGATTTT
1 CGCGTTGCGATTTT
74644 GGAAAATCGC
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
20 14 0.45
21 17 0.55
ACGTcount: A:0.11, C:0.18, G:0.25, T:0.45
Consensus pattern (20 bp):
CGCGTTGCGATTTTTATATT
Found at i:74634 original size:81 final size:81
Alignment explanation
Indices: 74490--74640 Score: 223
Period size: 81 Copynumber: 1.9 Consensus size: 81
74480 TTAAATATCG
* *
74490 CGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTATCGTTGCGATTTACGGATACGCGTT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTAGCGTTGCGATTTACAGATACGCGTT
74555 GCGATATACGGATACA
66 GCGATATACGGATACA
* * * * *
74571 CGTTGCGATTTACGGATACGCGTTGCGA-TTTATGTGTTCGCGTTGCGATTTTTCATATTCGCGT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTAGCGTTGCGA-TTTACAGATACGCGT
74635 TGCGAT
65 TGCGAT
74641 TTTGGAAAAT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
80 17 0.27
81 45 0.73
ACGTcount: A:0.19, C:0.18, G:0.26, T:0.37
Consensus pattern (81 bp):
CGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTAGCGTTGCGATTTACAGATACGCGTT
GCGATATACGGATACA
Found at i:74653 original size:21 final size:21
Alignment explanation
Indices: 74608--74746 Score: 86
Period size: 21 Copynumber: 6.7 Consensus size: 21
74598 ATTTATGTGT
** * *
74608 TCGCGTTGCGATTTTTCATAT
1 TCGCGTTGCGATTTTGGAAAA
74629 TCGCGTTGCGATTTTGGAAAA
1 TCGCGTTGCGATTTTGGAAAA
** * * **
74650 TCGCAATGCGAATTTGTACTA
1 TCGCGTTGCGATTTTGGAAAA
* *
74671 TCGCATTGCGATTTT-CAAGAA
1 TCGCGTTGCGATTTTGGAA-AA
*
74692 TCGCGTTGCGATTTTGGAAAC
1 TCGCGTTGCGATTTTGGAAAA
** * **
74713 T-GATTTGCGATTCTGG-GGA
1 TCGCGTTGCGATTTTGGAAAA
74732 TCGCGTTGCGATTTT
1 TCGCGTTGCGATTTT
74747 TATTTCGCGT
Statistics
Matches: 88, Mismatches: 27, Indels: 7
0.72 0.22 0.06
Matches are distributed among these distances:
19 1 0.01
20 23 0.26
21 62 0.70
22 2 0.02
ACGTcount: A:0.20, C:0.17, G:0.25, T:0.37
Consensus pattern (21 bp):
TCGCGTTGCGATTTTGGAAAA
Found at i:74702 original size:42 final size:44
Alignment explanation
Indices: 74608--74707 Score: 102
Period size: 42 Copynumber: 2.4 Consensus size: 44
74598 ATTTATGTGT
* * *
74608 TCGCGTTGCG-ATTT-TTCATATTCGCGTTGCGATTTTGGAAAA
1 TCGCGTTGCGAATTTGTACATATTCGCATTGCGATTTTGCAAAA
**
74650 TCGCAATGCGAATTTGTAC-TA-TCGCATTGCGATTTT-CAAGAA
1 TCGCGTTGCGAATTTGTACATATTCGCATTGCGATTTTGCAA-AA
*
74692 TCGCGTTGCGATTTTG
1 TCGCGTTGCGAATTTG
74708 GAAACTGATT
Statistics
Matches: 47, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
41 2 0.04
42 37 0.79
43 6 0.13
44 2 0.04
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.38
Consensus pattern (44 bp):
TCGCGTTGCGAATTTGTACATATTCGCATTGCGATTTTGCAAAA
Found at i:74853 original size:2 final size:2
Alignment explanation
Indices: 74846--74879 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
74836 GGCGATTTTC
74846 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
74880 TATCTTGATC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:80421 original size:113 final size:113
Alignment explanation
Indices: 80295--80634 Score: 662
Period size: 113 Copynumber: 3.0 Consensus size: 113
80285 CAAATTAATA
*
80295 AAAAAATCAATATTTAGATTTATTTTATATATTTTGATGAAGTTTAAATTATGAAACTAGTTGAT
1 AAAAAATCAATATTTAGATTTATTTTATATATTTTGATGAAGTTTAAATTATGAAATTAGTTGAT
80360 GAATCATGAAACAAATAGATTATGACGATTTATTTTTTTAGTTTGGAT
66 GAATCATGAAACAAATAGATTATGACGATTTATTTTTTTAGTTTGGAT
80408 AAAAAATCAATATTTAGATTTATTTTATATATTTTGATGAAGTTTAAATTATGAAATTAGTTGAT
1 AAAAAATCAATATTTAGATTTATTTTATATATTTTGATGAAGTTTAAATTATGAAATTAGTTGAT
80473 GAATCATGAAACAAATAGATTATGACGATTTATTTTTTTAGTTTGGAT
66 GAATCATGAAACAAATAGATTATGACGATTTATTTTTTTAGTTTGGAT
80521 AAAAAATCAATATTTAGATTTATTTTATATATTTTGATGAAGTTTAAATTATGAAATTAGTTGAT
1 AAAAAATCAATATTTAGATTTATTTTATATATTTTGATGAAGTTTAAATTATGAAATTAGTTGAT
*
80586 GAATCATGAAACAAATAGATTATGATGATTTATTTTTTTAGTTTGGAT
66 GAATCATGAAACAAATAGATTATGACGATTTATTTTTTTAGTTTGGAT
80634 A
1 A
80635 GAGAATTATA
Statistics
Matches: 225, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
113 225 1.00
ACGTcount: A:0.39, C:0.04, G:0.13, T:0.44
Consensus pattern (113 bp):
AAAAAATCAATATTTAGATTTATTTTATATATTTTGATGAAGTTTAAATTATGAAATTAGTTGAT
GAATCATGAAACAAATAGATTATGACGATTTATTTTTTTAGTTTGGAT
Found at i:83460 original size:42 final size:42
Alignment explanation
Indices: 83401--83699 Score: 548
Period size: 42 Copynumber: 7.2 Consensus size: 42
83391 GATTCGCAAC
* * *
83401 GCGATAGTCGAAGTTCGCATTGCGATTTATTCCAAATTCGTT
1 GCGATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTCGTT
*
83443 GCAATAGGCGAAGTTCGCGTTGCGATTCATTCCAAA-TCGTT
1 GCGATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTCGTT
83484 GCGATAGGCGAAGTTCGCGTTGCGATTCATTCC-AATTCGTT
1 GCGATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTCGTT
83525 GCGATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTCGTT
1 GCGATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTCGTT
83567 GCGATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTCGTT
1 GCGATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTCGTT
83609 GCGATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTCGTT
1 GCGATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTCGTT
83651 GCGATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTCGTT
1 GCGATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTCGTT
83693 GCGATAG
1 GCGATAG
83700 TTCAAATATT
Statistics
Matches: 250, Mismatches: 5, Indels: 4
0.97 0.02 0.02
Matches are distributed among these distances:
40 2 0.01
41 75 0.30
42 173 0.69
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (42 bp):
GCGATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTCGTT
Found at i:83692 original size:21 final size:21
Alignment explanation
Indices: 83460--83697 Score: 122
Period size: 21 Copynumber: 11.4 Consensus size: 21
83450 GCGAAGTTCG
83460 CGTTGCGATTCATTCCAAA-T
1 CGTTGCGATTCATTCCAAATT
** * *
83480 CGTTGCGA-T-AGGCGAAGTT
1 CGTTGCGATTCATTCCAAATT
83499 CGCGTTGCGATTCATTCC-AATT
1 --CGTTGCGATTCATTCCAAATT
** * *
83521 CGTTGCGA-T-AGGCGAAGTT
1 CGTTGCGATTCATTCCAAATT
83540 CGCGTTGCGATTCATTCCAAATT
1 --CGTTGCGATTCATTCCAAATT
** * *
83563 CGTTGCGA-T-AGGCGAAGTT
1 CGTTGCGATTCATTCCAAATT
83582 CGCGTTGCGATTCATTCCAAATT
1 --CGTTGCGATTCATTCCAAATT
** * *
83605 CGTTGCGA-T-AGGCGAAGTT
1 CGTTGCGATTCATTCCAAATT
83624 CGCGTTGCGATTCATTCCAAATT
1 --CGTTGCGATTCATTCCAAATT
** * *
83647 CGTTGCGA-T-AGGCGAAGTT
1 CGTTGCGATTCATTCCAAATT
83666 CGCGTTGCGATTCATTCCAAATT
1 --CGTTGCGATTCATTCCAAATT
83689 CGTTGCGAT
1 CGTTGCGAT
83698 AGTTCAAATA
Statistics
Matches: 156, Mismatches: 40, Indels: 43
0.65 0.17 0.18
Matches are distributed among these distances:
18 6 0.04
19 24 0.15
20 19 0.12
21 73 0.47
22 8 0.05
23 26 0.17
ACGTcount: A:0.21, C:0.22, G:0.26, T:0.32
Consensus pattern (21 bp):
CGTTGCGATTCATTCCAAATT
Found at i:83753 original size:126 final size:125
Alignment explanation
Indices: 83401--83699 Score: 420
Period size: 124 Copynumber: 2.4 Consensus size: 125
83391 GATTCGCAAC
* * * * * *
83401 GCGATAGTCGAAGTTCGCATTGCGATTTATTCCAAATTCGTTGCAATAGGCGAAGTTCGCGTTGC
1 GCGATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTCGTTGCGATAGGCGAAATTCGCATTGC
* ** * *
83466 GATTCATTCCAAA-TCGTTGCGATAGGCGAAGTTCGCGTTGCGATTCATTCCAATTCGTT
66 GATTCATTCAAAATTCGTTGAAAAAGGAGAAGTTCGCGTTGCGATTCATTCCAATTCGTT
* *
83525 GCGATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTCGTTGCGATAGGCGAAGTTCGCGTTGC
1 GCGATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTCGTTGCGATAGGCGAAATTCGCATTGC
* ** * *
83590 GATTCATTCCAAATTCGTTGCGATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTCGTT
66 GATTCATTCAAAATTCGTTGAAAAAGGAGAAGTTCGCGTTGCGATTCATTCC-AATTCGTT
83651 GCGATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTCGTTGCGATAG
1 GCGATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTCGTTGCGATAG
83700 TTCAAATATT
Statistics
Matches: 169, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
124 74 0.44
125 38 0.22
126 57 0.34
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (125 bp):
GCGATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTCGTTGCGATAGGCGAAATTCGCATTGC
GATTCATTCAAAATTCGTTGAAAAAGGAGAAGTTCGCGTTGCGATTCATTCCAATTCGTT
Found at i:83788 original size:6 final size:6
Alignment explanation
Indices: 83777--83836 Score: 63
Period size: 6 Copynumber: 10.5 Consensus size: 6
83767 GACACGTATT
* * * *
83777 ACCACG ACCACG ACCACG ACAACG ACCATG ACCACG ATCATG ACC-CG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
83824 ACC-CG ACC-CG ACC
1 ACCACG ACCACG ACC
83837 CAAAAAATCA
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
5 14 0.30
6 32 0.70
ACGTcount: A:0.32, C:0.47, G:0.17, T:0.05
Consensus pattern (6 bp):
ACCACG
Found at i:85130 original size:19 final size:17
Alignment explanation
Indices: 85106--85168 Score: 63
Period size: 19 Copynumber: 3.4 Consensus size: 17
85096 TTAATAGTGA
85106 ATTATAATAATATATTTTT
1 ATTATAAT--TATATTTTT
85125 ATTATAATTATATTTTT
1 ATTATAATTATATTTTT
*
85142 ATTTTCATATGTTATATTTTT
1 A--TT-ATA-ATTATATTTTT
85163 ATTATA
1 ATTATA
85169 GTTTAAATTG
Statistics
Matches: 39, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
17 10 0.26
18 3 0.08
19 12 0.31
20 3 0.08
21 11 0.28
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (17 bp):
ATTATAATTATATTTTT
Found at i:86447 original size:16 final size:16
Alignment explanation
Indices: 86426--86458 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
86416 AGTGAAATAG
*
86426 TGGGAGCTGTCCGTAA
1 TGGGAGCTATCCGTAA
86442 TGGGAGCTATCCGTAA
1 TGGGAGCTATCCGTAA
86458 T
1 T
86459 AGAAGCTATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.18, G:0.33, T:0.27
Consensus pattern (16 bp):
TGGGAGCTATCCGTAA
Found at i:93586 original size:828 final size:829
Alignment explanation
Indices: 90929--93817 Score: 5717
Period size: 829 Copynumber: 3.5 Consensus size: 829
90919 TTCCGCAACA
* *
90929 ATTAAAACTGTTGTTTTAACCCCATTGAAATGTGGTTACATTCTTATGTGATTTGTGATTACATT
1 ATTAAAACTGCTGTTTTAACCCCATTGAAATGTGGGTACATTCTTATGTGATTTGTGATTACATT
90994 TTCTGACATTAGTTTTCTTTCTTTTCTTTTGTTTTTCTCATGAGGCTATCGATAACCTGGAGGAT
66 TTCTGACATTAGTTTTCTTTCTTTTCTTTTGTTTTTCTCATGAGGCTATCGATAACCTGGAGGAT
91059 GCCAGTAATGAGTTGATTCTAACCGATGAGGAAGTAGTACGGTTCCAAATTGGAGAAGTCTTTGC
131 GCCAGTAATGAGTTGATTCTAACCGATGAGGAAGTAGTACGGTTCCAAATTGGAGAAGTCTTTGC
91124 TCATGTCCCCAAGCAGGATGTGGAGACCAGGATAGAAGAGATGAGGGAAGTGAGCAGCAAGAACT
196 TCATGTCCCCAAGCAGGATGTGGAGACCAGGATAGAAGAGATGAGGGAAGTGAGCAGCAAGAACT
91189 TAGAAAAACTCGAGGAGGAAAAAGAATCAGTAGCAGCACAAATGGCCGAGTTGAAGAAGGTTTTG
261 TAGAAAAACTCGAGGAGGAAAAAGAATCAGTAGCAGCACAAATGGCCGAGTTGAAGAAGGTTTTG
91254 TACGGGAAGTTCAAGAACTCCATCAACCTAGAAGAGGATTAATACCCTTGGTTTATTCTCTTCTT
326 TACGGGAAGTTCAAGAACTCCATCAACCTAGAAGAGGATTAATACCCTTGGTTTATTCTCTTCTT
91319 TCCCTCCAAGTTTTGTACTGAAACATAGCGTATAAGTGTAACATTCATGATTAGCTCTTGAATTC
391 TCCCTCCAAGTTTTGTACTGAAACATAGCGTATAAGTGTAACATTCATGATTAGCTCTTGAATTC
91384 GTGGATGTCAACTTTGTTGTGAACTTGATGTTTCTATCAGATGTTTGTGAAATTTGAATTCATGT
456 GTGGATGTCAACTTTGTTGTGAACTTGATGTTTCTATCAGATGTTTGTGAAATTTGAATTCATGT
91449 CCTTTTACTTTTAAAATATATATAAGAAATCGAGTCTCAAATAATTTTATACAAATTTGAGTACT
521 CCTTTTACTTTTAAAATATATATAAGAAATCGAGTCTCAAATAATTTTATACAAATTTGAGTACT
91514 GAAACATAGCGTATAGTTAATTGGCTAGAAACTGTGGTTGCATGGTGAATGATTTGATCTGTTGA
586 GAAACATAGCGTATAGTTAATTGGCTAGAAACTGTGGTTGCATGGTGAATGATTTGATCTGTTGA
91579 AAGAAAAATCGAAACTGCCCCTTCTCATTGATTAGCCTTAAACTTTGACTTCGACTCTCCTGTTT
651 AAGAAAAATCGAAACTGCCCCTTCTCATTGATTAGCCTTAAACTTTGACTTCGACTCTCCTGTTT
91644 CTTAAACTAGATGGTTATCATGCTGCAGAACTTGAAACTTGATACGTTGTTAGATTTTTGTTGCA
716 CTTAAACTAGATGGTTATCATGCTGCAGAACTTGAAACTTGATACGTTGTTAGATTTTTGTTGCA
91709 CCTGACCAAACCGCAAGTGTTGTCATCGTTTTAGAAACTGTTCAGAGTC
781 CCTGACCAAACCGCAAGTGTTGTCATCGTTTTAGAAACTGTTCAGAGTC
91758 ATTAAAACTGCTGTTTTAACCCCATTGAAATGTGGGTACATTCTTATGTGATTTGTGATTACATT
1 ATTAAAACTGCTGTTTTAACCCCATTGAAATGTGGGTACATTCTTATGTGATTTGTGATTACATT
91823 TTCTGACATTAGTTTTCTTTCTTTTCTTTTGTTTTTCTCATGAGGCTATCGATAACCTGGAGGAT
66 TTCTGACATTAGTTTTCTTTCTTTTCTTTTGTTTTTCTCATGAGGCTATCGATAACCTGGAGGAT
*
91888 GCCAGTAATGAGTTGATTCTAACCGATGAGGAAGTAGTACGATTCCAAATTGGAGAAGTCTTTGC
131 GCCAGTAATGAGTTGATTCTAACCGATGAGGAAGTAGTACGGTTCCAAATTGGAGAAGTCTTTGC
91953 TCATGTCCCCAAGCAGGATGTGGAGACCAGGATAGAAGAGATGAGGGAAGTGAGCAGCAAGAACT
196 TCATGTCCCCAAGCAGGATGTGGAGACCAGGATAGAAGAGATGAGGGAAGTGAGCAGCAAGAACT
* *
92018 TAGAAAAACTTGAGGAGGAAAAAGAATCAGTAGTAGCACAAATGGCCGAGTTGAAGAAGGTTTTG
261 TAGAAAAACTCGAGGAGGAAAAAGAATCAGTAGCAGCACAAATGGCCGAGTTGAAGAAGGTTTTG
92083 TACGGGAAGTTCAAGAACTCCATCAACCTAGAAGAGGATTAATACCCTTGGTTTATTCTCTTCTT
326 TACGGGAAGTTCAAGAACTCCATCAACCTAGAAGAGGATTAATACCCTTGGTTTATTCTCTTCTT
92148 TCCCTCCAAGTTTTGTACTGAAACATAGCGTATAAGTGTAACATTCATGATTAGCTCTTGAATTC
391 TCCCTCCAAGTTTTGTACTGAAACATAGCGTATAAGTGTAACATTCATGATTAGCTCTTGAATTC
92213 GTGGATGTCAACTTTGTTGTGAACTTGATGTTTCTATCAGATGTTTGTGAAATTTGAATTCATGT
456 GTGGATGTCAACTTTGTTGTGAACTTGATGTTTCTATCAGATGTTTGTGAAATTTGAATTCATGT
92278 CCTTTTACTTTTAAAATATATATAAGAAATCGAGTCTCAAATAATTTTATACAAATTTGAGTACT
521 CCTTTTACTTTTAAAATATATATAAGAAATCGAGTCTCAAATAATTTTATACAAATTTGAGTACT
92343 GAAACATAGCGTATAGTTAATTGGCTAGAAACTGTGGTTGCATGGTGAATGATTTGATCTGTTGA
586 GAAACATAGCGTATAGTTAATTGGCTAGAAACTGTGGTTGCATGGTGAATGATTTGATCTGTTGA
92408 AAGAAAAATCGAAACTGCCCCTTCTCATTGATTAGCCTTAAACTTTGACTTCGACTCTCCTGTTT
651 AAGAAAAATCGAAACTGCCCCTTCTCATTGATTAGCCTTAAACTTTGACTTCGACTCTCCTGTTT
92473 CTTAAACTAGATGGTTATCATGCTGCAGAACTTGAAACTTGATACGTTGTTAGATTTTTGTTGCA
716 CTTAAACTAGATGGTTATCATGCTGCAGAACTTGAAACTTGATACGTTGTTAGATTTTTGTTGCA
92538 CCTGACCAAACCGCAAGTGTTGTCATCGTTTTAGAAACTGTTCAGAGTC
781 CCTGACCAAACCGCAAGTGTTGTCATCGTTTTAGAAACTGTTCAGAGTC
92587 ATTAAAACTGCTGTTTTAACCCCATTGAAATGTGGGTACATTCTTATGTGATTTGTGATTACATT
1 ATTAAAACTGCTGTTTTAACCCCATTGAAATGTGGGTACATTCTTATGTGATTTGTGATTACATT
92652 TTCTGACATTAGTTTTCTTTCTTTTCTTTTGTTTTTCTCATGAGGCTATCGATAACCTGGAGGAT
66 TTCTGACATTAGTTTTCTTTCTTTTCTTTTGTTTTTCTCATGAGGCTATCGATAACCTGGAGGAT
92717 GCCAGTAATGAGTTGATTCTAACCGATGAGGAAGTAGTACGGTTCCAAATTGGAGAAGTCTTTGC
131 GCCAGTAATGAGTTGATTCTAACCGATGAGGAAGTAGTACGGTTCCAAATTGGAGAAGTCTTTGC
92782 TCATGTCCCCAAGCAGGATGTGGAGACCAGGATAGAAGAGATGAGGGAAGTGAGCAGCAAGAACT
196 TCATGTCCCCAAGCAGGATGTGGAGACCAGGATAGAAGAGATGAGGGAAGTGAGCAGCAAGAACT
92847 TAGAAAAACTCGAGGAGGAAAAAGAATCAGTAGCAGCACAAATGGCCGAGTTGAAGAAGGTTTTG
261 TAGAAAAACTCGAGGAGGAAAAAGAATCAGTAGCAGCACAAATGGCCGAGTTGAAGAAGGTTTTG
92912 TAC-GGAAGTTCAAGAACTCCATCAACCTAGAAGAGGATTAATACCCTTGGTTTATTCTCTTCTT
326 TACGGGAAGTTCAAGAACTCCATCAACCTAGAAGAGGATTAATACCCTTGGTTTATTCTCTTCTT
92976 TCCCTCCAAGTTTTGTACTGAAACATAGCGTATAAGTGTAACATTCATGATTAGCTCTTGAATTC
391 TCCCTCCAAGTTTTGTACTGAAACATAGCGTATAAGTGTAACATTCATGATTAGCTCTTGAATTC
93041 GTGGATGTCAACTTTGTTGTGAACTTGATGTTTCTATCAGATGTTTGTGAAATTTGAATTCATGT
456 GTGGATGTCAACTTTGTTGTGAACTTGATGTTTCTATCAGATGTTTGTGAAATTTGAATTCATGT
*
93106 CATTTTACTTTTAAAATATATATAAGAAATCGAGTCTCAAATAATTTTATACAAATTTGAGTACT
521 CCTTTTACTTTTAAAATATATATAAGAAATCGAGTCTCAAATAATTTTATACAAATTTGAGTACT
93171 GAAACATAGCGTATAGTTAATTGGCTAGAAACTGTGGTTGCATGGTGAATGATTTGATCTGTTGA
586 GAAACATAGCGTATAGTTAATTGGCTAGAAACTGTGGTTGCATGGTGAATGATTTGATCTGTTGA
93236 AAGAAAAATCGAAACTGCCCCTTCTCATTGATTAGCCTTAAACTTTGACTTCGACTCTCCTGTTT
651 AAGAAAAATCGAAACTGCCCCTTCTCATTGATTAGCCTTAAACTTTGACTTCGACTCTCCTGTTT
93301 CTTAAACTAGATGGTTATCATGCTGCAGAACTTGAAACTTGATACGTTGTTAGATTTTTGTTGCA
716 CTTAAACTAGATGGTTATCATGCTGCAGAACTTGAAACTTGATACGTTGTTAGATTTTTGTTGCA
93366 CCTGACCAAACCGCAAGTGTTGTCATCGTTTTAGAAACTGTTCAGAGTC
781 CCTGACCAAACCGCAAGTGTTGTCATCGTTTTAGAAACTGTTCAGAGTC
93415 ATTAAAACTGCTGTTTTAACCCCATTGAAATGTGGGTACATTCTTATGTGATTTGTGATTACATT
1 ATTAAAACTGCTGTTTTAACCCCATTGAAATGTGGGTACATTCTTATGTGATTTGTGATTACATT
93480 TTCTGACATTAGTTTTCTTTCTTTTCTTTTGTTTTTCTCATGAGGCTATCGATAACCTGGAGGAT
66 TTCTGACATTAGTTTTCTTTCTTTTCTTTTGTTTTTCTCATGAGGCTATCGATAACCTGGAGGAT
93545 GCCAGTAATGAGTTGATTCTAACCGATGAGGAAGTAGTACGGTTCCAAATTGGAGAAGTCTTTGC
131 GCCAGTAATGAGTTGATTCTAACCGATGAGGAAGTAGTACGGTTCCAAATTGGAGAAGTCTTTGC
93610 TCATGTCCCCAAGCAGGATGTGGAGACCAGGATAGAAGAGATGAGGGAAGTGAGCAGCAAGAACT
196 TCATGTCCCCAAGCAGGATGTGGAGACCAGGATAGAAGAGATGAGGGAAGTGAGCAGCAAGAACT
93675 TAGAAAAACTCGAGGAGGAAAAAGAATCAGTAGCAGCACAAATGGCCGAGTTGAAGAAGGTTTTG
261 TAGAAAAACTCGAGGAGGAAAAAGAATCAGTAGCAGCACAAATGGCCGAGTTGAAGAAGGTTTTG
93740 TACGGGAAGTTCAAGAACTCCATCAACCTAGAAGAGGATTAATACCCTTGGTTTATTCTCTTCTT
326 TACGGGAAGTTCAAGAACTCCATCAACCTAGAAGAGGATTAATACCCTTGGTTTATTCTCTTCTT
93805 TCCCTCCAAGTTT
391 TCCCTCCAAGTTT
93818 GTTTGCTACT
Statistics
Matches: 2050, Mismatches: 9, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
828 827 0.40
829 1223 0.60
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (829 bp):
ATTAAAACTGCTGTTTTAACCCCATTGAAATGTGGGTACATTCTTATGTGATTTGTGATTACATT
TTCTGACATTAGTTTTCTTTCTTTTCTTTTGTTTTTCTCATGAGGCTATCGATAACCTGGAGGAT
GCCAGTAATGAGTTGATTCTAACCGATGAGGAAGTAGTACGGTTCCAAATTGGAGAAGTCTTTGC
TCATGTCCCCAAGCAGGATGTGGAGACCAGGATAGAAGAGATGAGGGAAGTGAGCAGCAAGAACT
TAGAAAAACTCGAGGAGGAAAAAGAATCAGTAGCAGCACAAATGGCCGAGTTGAAGAAGGTTTTG
TACGGGAAGTTCAAGAACTCCATCAACCTAGAAGAGGATTAATACCCTTGGTTTATTCTCTTCTT
TCCCTCCAAGTTTTGTACTGAAACATAGCGTATAAGTGTAACATTCATGATTAGCTCTTGAATTC
GTGGATGTCAACTTTGTTGTGAACTTGATGTTTCTATCAGATGTTTGTGAAATTTGAATTCATGT
CCTTTTACTTTTAAAATATATATAAGAAATCGAGTCTCAAATAATTTTATACAAATTTGAGTACT
GAAACATAGCGTATAGTTAATTGGCTAGAAACTGTGGTTGCATGGTGAATGATTTGATCTGTTGA
AAGAAAAATCGAAACTGCCCCTTCTCATTGATTAGCCTTAAACTTTGACTTCGACTCTCCTGTTT
CTTAAACTAGATGGTTATCATGCTGCAGAACTTGAAACTTGATACGTTGTTAGATTTTTGTTGCA
CCTGACCAAACCGCAAGTGTTGTCATCGTTTTAGAAACTGTTCAGAGTC
Found at i:98553 original size:21 final size:20
Alignment explanation
Indices: 98506--98553 Score: 51
Period size: 21 Copynumber: 2.4 Consensus size: 20
98496 AGAGCGTTTT
**
98506 CTAAAATGTTATTTTTCTAC
1 CTAAAATGTTATTTCGCTAC
**
98526 CGGAAATGTTAATTTCGCTAC
1 CTAAAATGTT-ATTTCGCTAC
98547 CTAAAAT
1 CTAAAAT
98554 AAATATTTCC
Statistics
Matches: 21, Mismatches: 6, Indels: 1
0.75 0.21 0.04
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.33, C:0.17, G:0.10, T:0.40
Consensus pattern (20 bp):
CTAAAATGTTATTTCGCTAC
Found at i:99086 original size:14 final size:14
Alignment explanation
Indices: 99067--99096 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
99057 CATTTATTAT
*
99067 GTTCGTTTATGTTC
1 GTTCGTTTACGTTC
99081 GTTCGTTTACGTTC
1 GTTCGTTTACGTTC
99095 GT
1 GT
99097 GTATGTTCGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.07, C:0.17, G:0.23, T:0.53
Consensus pattern (14 bp):
GTTCGTTTACGTTC
Found at i:99196 original size:16 final size:16
Alignment explanation
Indices: 99175--99205 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
99165 AAAAAATTTG
99175 TTCGTTTATGTTCGTA
1 TTCGTTTATGTTCGTA
99191 TTCGTTTATGTTCGT
1 TTCGTTTATGTTCGT
99206 TTATTTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.10, C:0.13, G:0.19, T:0.58
Consensus pattern (16 bp):
TTCGTTTATGTTCGTA
Found at i:105512 original size:23 final size:23
Alignment explanation
Indices: 105485--105529 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
105475 AACTCCATCA
*
105485 CCTCTCCCAAGGGTATTTCATTT
1 CCTCTCCCAAAGGTATTTCATTT
105508 CCTCTCCCAAAGGTATTTCATT
1 CCTCTCCCAAAGGTATTTCATT
105530 GCGTCATTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.20, C:0.31, G:0.11, T:0.38
Consensus pattern (23 bp):
CCTCTCCCAAAGGTATTTCATTT
Found at i:111390 original size:35 final size:36
Alignment explanation
Indices: 111318--111392 Score: 98
Period size: 36 Copynumber: 2.1 Consensus size: 36
111308 AAAAGTCTGT
*
111318 AATTTCATTCTAAACCCCAAATTCCAAAAATAATTC
1 AATTACATTCTAAACCCCAAATTCCAAAAATAATTC
* * * *
111354 AATTACATTTTAAACCTCAAATT-CTAAAATACTTC
1 AATTACATTCTAAACCCCAAATTCCAAAAATAATTC
111389 AATT
1 AATT
111393 TAGAGTTTAG
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
35 14 0.41
36 20 0.59
ACGTcount: A:0.44, C:0.21, G:0.00, T:0.35
Consensus pattern (36 bp):
AATTACATTCTAAACCCCAAATTCCAAAAATAATTC
Done.