genome.fa.s2991.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002991.1 Hibiscus syriacus cultivar Beakdansim tig00006185_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  152125

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4766--4829	33	1.9	33	100	0	128	45	20	25	9	1.80
5314--5564	42	5.9	42	75	10	179	50	5	15	29	1.66
11124--11162	18	2.2	18	90	0	60	48	2	2	46	1.29
11689--11740	20	2.6	20	84	6	70	15	15	17	51	1.76
11729--11809	22	3.7	22	77	9	78	19	19	25	34	1.96
11800--11868	19	3.5	19	73	11	66	18	18	21	40	1.91
11779--11868	41	2.2	41	95	0	162	17	18	24	38	1.92
11757--11850	22	4.4	22	75	10	97	17	19	25	38	1.92
12596--12649	22	2.5	22	87	0	81	38	25	16	18	1.92
12640--12687	19	2.5	19	86	0	78	39	18	20	20	1.92
16032--16099	27	2.6	27	95	4	122	30	11	16	41	1.84
17262--17384	31	4.0	31	95	2	212	38	22	19	19	1.94
21627--21718	31	3.0	31	93	3	150	38	22	19	19	1.94
25683--25736	25	2.2	25	89	0	81	48	11	9	31	1.70
25692--25739	25	1.9	25	100	0	96	50	6	8	35	1.58
26530--26624	27	3.6	27	95	2	167	31	11	15	41	1.83
30319--30386	27	2.6	27	95	4	122	30	11	16	41	1.84
33790--33834	15	2.8	17	81	15	51	44	0	13	42	1.43
41984--42012	4	7.2	4	100	0	58	0	24	0	75	0.80
42359--42430	26	2.8	26	82	12	78	36	1	4	58	1.26
50512--50586	37	2.0	37	97	0	141	36	21	29	13	1.91
51846--51926	37	2.2	37	82	10	94	45	3	2	48	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53965--54075	36	3.1	36	91	5	172	31	4	19	44	1.71
54322--54353	16	2.0	16	93	0	55	34	6	25	34	1.81
58419--58538	36	3.3	37	88	5	174	31	5	19	44	1.72
59739--59785	25	1.9	25	91	4	78	51	2	19	27	1.58
77622--77677	22	2.6	23	81	13	66	46	0	3	50	1.19
77622--77665	21	2.0	21	86	13	61	45	0	4	50	1.22
81051--81103	15	3.7	16	69	25	55	37	9	18	33	1.83
81038--81126	27	3.3	27	95	3	153	35	10	20	33	1.86
91079--91159	28	2.9	28	94	0	144	39	27	17	16	1.90
92481--92534	21	2.6	21	100	0	108	37	16	5	40	1.72
92665--92714	4	12.5	4	95	0	91	0	28	0	72	0.86
92976--93016	21	1.9	21	85	5	55	51	2	0	46	1.14
95030--95084	20	2.8	20	88	0	83	14	7	14	63	1.50
95034--95097	20	2.8	23	77	18	71	14	7	15	62	1.53
97431--97463	17	1.9	17	100	0	66	24	12	33	30	1.91
98609--98687	25	3.2	25	90	0	122	36	1	35	26	1.65
99251--99306	17	3.4	17	71	14	62	55	1	0	42	1.10
99261--99314	16	3.3	16	71	5	54	55	1	0	42	1.10
99253--99317	33	2.0	33	96	0	121	55	1	0	43	1.09
99256--99317	19	3.5	19	66	20	53	56	1	0	41	1.09
107813--107877	33	2.0	33	85	8	89	33	20	24	21	1.97
108099--108163	33	2.0	33	85	8	89	33	20	24	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107793--108367	286	2.0	286	99	0	1132	34	18	18	28	1.95
118035--118064	15	2.0	15	100	0	60	13	46	26	13	1.80
125405--125518	60	1.9	60	87	0	165	32	11	16	39	1.84
126336--126380	20	2.2	20	84	7	56	31	6	28	33	1.83
129171--129268	43	2.3	43	82	8	126	37	9	23	29	1.86
129859--129901	19	2.3	19	84	8	52	41	4	9	44	1.57
129984--130082	23	4.3	23	96	0	171	22	22	26	29	1.99
131255--131368	60	1.9	60	85	5	160	37	14	14	33	1.87
131253--131387	60	2.3	59	80	6	139	36	16	14	32	1.89
132832--132865	17	1.9	18	88	5	52	23	0	11	64	1.26

Tables:   1

The End!