genome.fa.s2992.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002992.1 Hibiscus syriacus cultivar Beakdansim tig00006188_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77250

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4026--4067	18	2.3	18	100	0	84	35	14	11	38	1.83
5320--5376	27	2.1	27	100	0	114	24	26	14	35	1.93
20624--20694	35	2.0	35	88	0	106	56	9	7	26	1.57
31241--31269	14	2.1	14	100	0	58	27	37	13	20	1.91
31221--31262	22	1.9	22	85	0	57	30	33	11	23	1.91
31312--31358	22	2.2	21	88	3	67	31	23	12	31	1.92
31577--31634	22	2.7	22	91	2	91	25	13	32	27	1.94
31953--31997	17	2.7	16	83	10	54	33	2	0	64	1.06
31953--31997	8	5.4	8	81	7	54	33	2	0	64	1.06
35720--35824	21	5.1	21	72	4	88	19	19	24	37	1.94
35724--35824	41	2.5	41	95	0	175	19	19	23	36	1.95
35749--35821	20	3.6	20	75	3	74	17	21	21	38	1.93
36465--36496	6	5.5	6	96	3	57	0	15	53	31	1.43
36590--36658	19	3.5	19	73	11	75	39	20	20	20	1.93
36608--36679	22	3.4	21	71	11	67	36	23	20	19	1.95
36590--36684	41	2.3	41	94	0	163	35	22	20	22	1.96
36692--36762	20	3.5	20	69	16	65	33	26	21	18	1.96
36672--36741	21	3.4	21	69	15	65	30	28	17	24	1.97
36672--36769	41	2.4	41	93	6	164	30	26	18	24	1.98
36768--36836	19	3.5	19	71	11	66	39	20	20	20	1.93
36786--36857	22	3.4	22	69	11	78	37	23	19	19	1.94
36768--36877	41	2.7	41	91	4	177	38	22	20	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36631--36905	137	2.0	136	84	4	358	34	24	20	20	1.96
36849--36900	20	2.6	20	100	0	104	38	26	25	9	1.86
36889--36942	21	2.6	21	96	0	99	29	27	16	25	1.97
36587--36921	178	1.9	178	91	3	541	35	23	20	21	1.96
38596--38680	24	3.5	24	83	1	98	42	18	17	21	1.89
38582--38680	24	4.0	25	80	3	96	40	18	17	24	1.91
40259--40293	13	2.6	14	91	8	56	45	22	0	31	1.53
42649--42794	18	8.1	18	94	0	229	0	35	11	52	1.38
42596--42812	54	4.1	54	85	3	257	0	36	10	51	1.43
42778--42832	15	3.7	15	87	0	83	0	30	10	58	1.33
42613--42788	18	9.8	18	86	7	123	1	36	10	52	1.43
42784--42841	30	1.9	30	92	0	98	0	34	13	51	1.42
45288--45331	21	2.1	21	91	0	70	34	0	22	43	1.54
45314--45345	14	2.3	14	94	0	55	21	0	34	43	1.53
46378--46636	37	7.2	35	74	18	205	45	3	6	45	1.45
46378--46605	38	6.2	38	80	9	224	45	3	6	44	1.45
46380--46598	73	3.0	74	83	11	252	45	3	6	44	1.46
46532--46667	31	4.2	30	77	14	101	46	2	5	46	1.37
46590--46658	29	2.3	30	82	5	77	46	2	5	44	1.42
47074--47118	22	2.0	23	83	8	58	53	26	13	6	1.64
48852--48911	29	2.1	28	90	6	95	20	13	20	46	1.83
58534--58580	24	2.0	24	91	0	76	59	4	8	27	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65557--65590	15	2.2	16	89	5	52	26	14	14	44	1.84
65993--66037	16	2.8	16	93	0	81	8	13	22	55	1.65
68736--68770	16	2.1	17	89	5	54	45	0	0	54	0.99
68919--68952	17	2.0	17	88	0	50	61	2	0	35	1.11
70694--70720	12	2.2	12	100	0	54	14	0	7	77	0.97

Tables:   1

The End!