genome.fa.s2993.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002993.1 Hibiscus syriacus cultivar Beakdansim tig00006189_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104730

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
845--880	15	2.4	15	90	9	56	58	0	0	41	0.98
954--1062	5	21.8	5	95	3	112	41	9	0	49	1.35
956--1010	2	31.5	2	73	26	54	41	0	0	58	0.98
984--1066	5	16.6	5	98	0	121	39	13	0	46	1.43
3631--3701	18	3.6	18	70	22	54	53	0	1	45	1.09
3646--3699	22	2.4	22	81	9	56	55	0	1	42	1.10
4667--4700	2	17.0	2	100	0	68	50	0	0	50	1.00
5529--5609	38	2.2	37	88	2	117	39	1	4	54	1.30
7275--7331	28	2.0	28	83	6	71	40	1	5	52	1.34
11774--11820	14	3.4	14	91	5	69	31	25	0	42	1.55
12405--12481	20	3.7	20	74	17	59	28	23	16	31	1.96
12405--12464	20	2.8	20	82	10	66	26	20	18	35	1.95
19695--20029	183	1.8	183	82	1	429	29	28	12	28	1.93
19868--20341	198	2.3	200	80	9	530	31	25	12	30	1.92
20030--20499	210	2.2	211	80	7	499	31	26	12	30	1.92
22933--22967	19	1.9	18	88	11	54	51	2	0	45	1.16
28989--29024	16	2.1	18	90	10	58	22	0	0	77	0.76
35231--35270	20	2.0	20	85	9	55	52	5	17	25	1.64
35415--35487	36	2.0	36	84	10	96	49	2	0	47	1.15
36817--36855	19	2.1	18	85	4	51	51	10	2	35	1.50
41562--42028	123	3.8	122	89	1	715	29	17	14	37	1.90
41562--42028	121	3.8	122	89	2	708	29	17	14	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49293--49374	25	3.4	23	76	14	67	41	4	0	53	1.22
49303--49374	25	3.0	23	84	15	92	41	4	0	54	1.20
49303--49390	25	3.4	25	77	16	83	42	3	0	54	1.17
49544--49609	32	2.1	31	83	8	80	53	9	6	31	1.57
51142--51281	72	1.9	73	89	1	219	34	12	5	47	1.64
60498--60889	186	2.1	186	94	1	680	42	3	8	45	1.52
61162--61206	20	2.2	20	88	0	72	53	6	2	37	1.40
62178--62219	22	1.9	21	85	9	57	66	9	2	21	1.32
67702--67744	2	21.5	2	100	0	86	51	0	0	48	1.00
68016--68089	6	12.3	6	95	0	76	39	5	10	44	1.62
68055--68092	2	19.0	2	94	0	67	47	0	2	50	1.15
68092--68116	2	12.5	2	100	0	50	52	0	48	0	1.00
74375--74454	30	2.6	30	80	7	90	41	8	7	42	1.64
75820--75861	2	21.0	2	100	0	84	50	0	50	0	1.00
81900--81987	24	3.5	24	80	13	106	30	17	13	38	1.88
81969--82002	17	2.0	17	100	0	68	35	11	11	41	1.78
81945--82041	39	2.4	41	86	3	126	35	14	10	40	1.80
84806--84830	6	4.2	6	100	0	50	32	52	16	0	1.44
85535--85686	41	3.7	41	90	0	223	30	25	21	22	1.99
85559--85676	21	5.7	21	68	19	70	33	22	21	22	1.98
85619--85695	21	3.7	21	72	16	52	31	23	20	24	1.98
88994--89070	38	2.0	39	97	2	147	31	16	7	44	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93663--93734	30	2.4	30	92	0	117	30	25	20	23	1.99
93721--93845	31	4.0	30	80	13	137	30	20	20	29	1.97
94677--94721	23	2.0	23	86	0	63	26	26	26	20	1.99
94829--94879	25	2.0	26	96	3	95	33	23	23	19	1.97
96544--96587	21	2.1	21	86	0	61	15	25	27	31	1.96
97895--97935	21	2.0	21	85	0	55	17	21	29	31	1.96
102256--102343	31	2.8	31	75	11	88	35	14	18	31	1.91

Tables:   1

The End!