genome.fa.s2995.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002995.1 Hibiscus syriacus cultivar Beakdansim tig00006195_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88627

Tables:   1   

This is table  1  of  1  ( 97 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
371--641	19	15.4	19	81	15	343	46	18	21	14	1.83
399--662	52	5.0	52	91	6	444	45	17	22	14	1.84
669--717	18	2.6	19	93	6	82	16	22	18	42	1.88
823--858	14	2.6	14	86	4	56	44	22	0	33	1.53
2833--2889	14	3.7	14	77	20	60	45	22	21	10	1.82
2814--2906	33	2.8	33	95	0	168	47	21	20	10	1.80
2777--2911	19	7.6	19	76	16	128	45	23	19	11	1.82
2907--3035	19	7.3	19	75	17	125	8	17	28	45	1.77
2907--2998	33	2.8	33	93	3	150	7	18	28	45	1.76
3083--3458	93	4.1	93	98	0	727	46	18	12	22	1.83
5159--5248	14	5.7	14	72	23	72	43	23	24	8	1.82
5173--5270	19	5.7	19	70	22	81	44	22	22	10	1.82
5152--5265	33	3.5	33	95	1	203	46	21	22	9	1.80
5282--5339	14	3.7	14	72	24	53	8	24	22	44	1.80
5323--5376	19	2.8	20	80	5	65	12	25	20	40	1.88
5266--5385	34	3.4	33	88	9	159	10	22	21	45	1.81
5289--5397	20	5.8	20	70	18	90	11	23	19	44	1.84
5477--5547	33	2.2	33	92	0	115	49	16	22	11	1.78
5729--5783	22	2.5	22	81	0	74	20	16	40	23	1.91
5930--6123	20	9.6	20	79	5	203	19	20	24	35	1.95
5932--6103	60	2.8	60	84	0	236	20	19	25	34	1.96
5929--6244	60	5.2	60	77	8	232	19	18	25	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6090--6187	20	4.8	20	77	3	79	21	18	23	36	1.95
6090--6246	41	3.9	41	70	14	110	18	17	25	38	1.93
6377--6478	34	2.9	36	88	7	163	28	13	13	44	1.82
6538--6577	21	1.9	21	85	10	55	15	37	32	15	1.88
7412--7482	32	2.2	32	82	2	81	36	14	7	42	1.72
12466--12526	31	2.0	31	86	0	86	32	11	13	42	1.79
13768--13811	14	3.2	14	87	3	63	20	0	29	50	1.49
13775--13815	21	2.0	21	90	0	64	24	0	26	48	1.51
13780--13825	21	2.2	21	84	0	56	19	2	32	45	1.62
13932--13993	11	5.9	11	69	17	51	40	1	1	56	1.19
15616--15648	16	2.1	16	94	0	57	60	24	9	6	1.49
15714--15753	20	2.0	20	90	0	62	55	15	15	15	1.71
15750--15803	23	2.3	23	87	0	72	61	18	9	11	1.55
15768--15823	23	2.6	21	80	11	51	64	25	5	5	1.36
38281--38385	37	2.8	37	75	0	93	40	10	14	34	1.80
38928--39042	23	5.1	24	71	18	79	27	5	0	66	1.19
38987--39039	26	1.9	27	85	11	72	30	0	1	67	1.01
38926--39042	18	6.4	18	71	15	62	27	5	0	66	1.18
39056--39096	11	3.6	11	87	6	55	24	4	4	65	1.32
39304--39334	2	15.5	2	100	0	62	48	0	0	51	1.00
39490--39516	2	13.5	2	100	0	54	48	0	0	51	1.00
39608--39646	2	19.5	2	100	0	78	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44359--44392	15	2.2	16	89	5	52	82	5	11	0	0.83
45010--45086	22	3.5	22	89	3	120	37	27	15	19	1.92
46349--46413	28	2.5	26	85	12	80	30	4	1	63	1.24
51086--51146	15	4.0	14	78	21	61	78	8	11	1	1.02
51753--51832	22	3.6	22	84	0	106	37	28	11	22	1.89
52244--52280	18	2.0	19	89	5	58	21	5	29	43	1.75
52573--53553	106	9.3	106	89	3	1426	33	24	18	23	1.96
54282--54386	37	2.8	37	83	0	138	40	14	14	31	1.86
54910--54939	2	15.0	2	100	0	60	50	0	0	50	1.00
54948--55056	21	5.2	21	69	20	68	26	4	1	66	1.21
55006--55055	25	1.9	27	92	8	86	28	0	2	70	0.99
55070--55110	11	3.6	11	87	6	55	24	4	4	65	1.32
55199--55259	20	2.9	21	71	26	56	32	6	0	60	1.22
55241--55288	24	2.0	24	84	8	62	25	2	2	70	1.09
55555--55602	23	2.1	23	84	7	62	35	2	0	62	1.07
55592--55618	2	13.5	2	100	0	54	48	0	0	51	1.00
55628--55705	22	3.6	21	74	19	63	16	2	5	75	1.09
58362--58642	141	2.0	141	86	2	395	35	13	23	27	1.92
59631--59656	13	2.0	13	100	0	52	46	0	7	46	1.31
59676--59942	141	1.9	141	88	0	408	35	13	25	25	1.93
59975--60614	226	2.8	226	86	4	831	36	10	18	33	1.86
64054--64088	3	11.7	3	100	0	70	0	31	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67100--67378	140	2.0	140	99	0	549	47	12	13	26	1.79
67928--67978	26	1.9	27	88	4	77	68	3	9	17	1.33
68792--68836	22	2.0	22	83	12	56	15	28	6	48	1.70
69536--69609	22	3.4	22	90	0	76	37	13	13	35	1.84
69548--69615	22	3.2	21	93	4	102	36	11	20	30	1.89
69556--69615	22	2.7	22	97	0	111	35	11	20	33	1.88
69989--70077	46	1.9	46	86	4	126	28	22	13	35	1.92
71733--71789	24	2.4	24	96	0	105	31	21	15	31	1.94
74451--74493	8	5.6	8	83	5	54	0	16	0	83	0.64
74451--74492	7	5.7	7	88	5	57	0	16	0	83	0.65
74459--74491	14	2.4	14	100	0	66	0	18	0	81	0.68
79288--79345	28	2.2	26	84	6	71	60	1	5	32	1.29
81783--81831	3	16.7	3	82	4	64	61	2	4	32	1.26
82139--82326	43	4.3	43	71	15	127	23	18	32	25	1.97
81998--82376	130	2.9	134	83	7	452	24	18	31	25	1.98
82205--82364	89	1.9	82	85	8	221	24	19	31	25	1.98
82403--82464	28	2.2	28	88	5	90	51	12	11	24	1.72
83374--83602	67	3.5	64	85	7	237	45	13	11	29	1.79
83446--83572	37	3.6	38	69	24	125	44	11	11	31	1.77
83489--83619	30	4.1	30	72	12	109	42	13	10	32	1.79
83435--83602	67	2.5	67	94	0	284	45	12	11	29	1.78
83706--83893	29	6.5	30	84	6	99	44	14	10	29	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83725--83878	57	2.7	57	87	4	188	44	15	11	28	1.80
83725--83880	27	5.6	27	88	6	188	44	15	10	29	1.80
83725--83882	28	5.6	28	87	5	212	43	15	10	29	1.81
84132--84235	36	3.0	36	81	4	124	35	11	20	32	1.88
84133--84251	36	3.4	36	79	6	111	36	12	21	30	1.90
84203--84435	105	2.2	104	84	6	287	37	12	18	31	1.88
84906--84941	18	2.0	18	88	0	54	27	0	22	50	1.50
86110--86147	11	3.4	11	89	7	58	5	13	10	71	1.30
86753--86846	46	2.1	45	91	2	152	37	8	27	26	1.85

Tables:   1

The End!