genome.fa.s2997.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002997.1 Hibiscus syriacus cultivar Beakdansim tig00006198_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  142969

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
200--468	137	2.0	133	92	5	452	45	4	8	41	1.55
444--518	35	2.2	34	90	2	114	34	5	14	45	1.68
7539--7613	36	2.1	37	85	9	102	32	18	26	22	1.97
8234--8320	21	4.1	21	74	10	79	25	13	21	39	1.90
8372--8424	23	2.3	23	90	0	79	15	28	24	32	1.95
18285--18345	27	2.3	27	75	11	63	40	3	11	44	1.57
25909--25946	18	2.1	18	95	0	67	44	5	2	47	1.39
26091--26133	2	21.5	2	100	0	86	51	0	0	48	1.00
26147--26191	20	2.2	20	84	7	56	51	0	2	46	1.13
28620--28649	14	2.1	15	93	6	53	63	10	0	26	1.26
29102--29164	30	2.1	30	82	5	74	33	12	6	47	1.67
29219--29249	15	2.1	15	93	0	53	19	9	0	70	1.14
32011--32075	27	2.5	25	76	18	62	56	3	0	40	1.15
32178--32236	28	2.1	29	87	9	86	25	10	1	62	1.36
38235--38467	93	2.5	94	95	0	423	40	24	14	21	1.90
44531--44562	12	2.7	12	100	0	64	68	0	6	25	1.12
52466--52516	2	25.5	2	100	0	102	50	0	0	49	1.00
60376--60430	28	2.0	28	85	7	76	45	1	29	23	1.63
62761--62833	39	1.9	37	83	5	92	36	19	21	21	1.95
67698--67772	39	1.9	39	89	5	116	30	16	12	41	1.84
68452--68482	2	15.5	2	100	0	62	48	0	51	0	1.00
72575--72609	16	2.1	17	94	5	63	31	8	25	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73358--73390	15	2.1	16	88	5	50	51	15	24	9	1.72
76876--76948	39	1.9	37	83	5	92	36	19	21	21	1.95
77229--77287	28	2.1	29	87	9	86	25	10	1	62	1.36
83276--83508	93	2.5	94	95	0	423	40	23	14	21	1.90
87053--87079	7	3.9	7	100	0	54	14	11	29	44	1.80
88118--88164	23	2.0	24	83	4	60	68	2	12	17	1.31
88528--88598	31	2.3	31	100	0	142	39	7	21	32	1.80
88815--88839	2	12.5	2	100	0	50	52	0	0	48	1.00
92869--92941	39	1.9	37	83	5	92	36	19	21	21	1.95
98858--98912	28	2.0	28	85	7	76	49	1	25	23	1.60
98972--99003	12	2.7	12	100	0	64	68	0	6	25	1.12
106247--106293	23	2.0	24	83	4	60	68	2	12	17	1.31
110970--111042	39	1.9	37	83	5	92	36	19	21	21	1.95
114441--114470	15	2.0	15	100	0	60	20	20	13	46	1.83
116231--116513	30	9.4	30	95	0	494	33	22	18	25	1.96
116499--116591	31	3.0	31	79	3	98	34	21	17	26	1.95
116765--116790	4	6.5	4	100	0	52	50	23	0	26	1.50
116945--116983	2	20.0	2	94	5	71	51	0	0	48	1.00
120841--121063	30	7.4	30	98	0	428	32	23	19	24	1.97
121049--121141	31	3.0	31	79	3	98	34	21	17	26	1.95
121315--121340	4	6.5	4	100	0	52	50	23	0	26	1.50
121495--121525	2	16.0	2	93	6	55	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123128--123202	39	1.9	39	91	0	123	28	17	14	40	1.89
125924--126323	174	2.3	174	98	0	764	28	27	15	28	1.96
126265--126621	141	2.5	140	77	1	365	28	27	13	31	1.94
128882--129028	77	1.9	77	88	2	224	40	25	8	25	1.84
131363--131408	21	2.1	22	84	4	58	34	2	0	63	1.07
135112--135150	21	1.9	21	89	5	62	15	5	35	43	1.69
135205--135278	31	2.4	31	95	0	130	55	6	5	32	1.49
136533--136595	29	2.2	29	91	0	99	28	19	9	42	1.82
137278--137345	29	2.3	31	79	5	77	48	7	13	30	1.69
139117--139152	3	11.7	3	94	5	63	36	0	0	63	0.94

Tables:   1

The End!