genome.fa.s2998.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002998.1 Hibiscus syriacus cultivar Beakdansim tig00006199_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76720

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5934--5974	3	13.7	3	84	0	55	60	2	4	31	1.30
5934--5974	18	2.4	18	88	11	61	60	2	4	31	1.30
6294--6470	43	4.1	43	70	16	132	23	18	31	25	1.97
6167--6484	134	2.4	130	87	6	437	24	18	31	25	1.98
6167--6499	129	2.5	130	84	7	424	24	18	30	25	1.98
6350--6509	83	1.9	84	85	8	225	24	19	31	25	1.98
6548--6609	28	2.2	28	88	5	90	51	12	11	24	1.72
7450--7505	30	1.9	28	85	7	76	46	8	14	30	1.75
7506--7807	67	4.7	58	85	9	174	45	13	10	30	1.78
7646--7771	37	3.6	37	70	16	124	45	11	11	31	1.76
7584--7801	67	3.4	67	94	3	362	45	12	11	30	1.77
7688--7818	30	4.1	30	73	12	118	41	13	10	33	1.79
7909--8090	29	6.4	29	84	7	169	46	14	10	28	1.78
7923--8077	53	2.8	56	85	6	174	44	14	10	29	1.80
7923--8077	29	5.6	27	89	5	179	44	14	10	29	1.80
8363--8448	36	2.4	36	84	2	109	36	11	20	31	1.89
8399--8632	105	2.2	105	84	4	287	37	12	18	31	1.88
9095--9138	4	11.0	4	100	0	88	25	0	25	50	1.50
10313--10350	11	3.4	11	89	7	58	5	13	10	71	1.30
10308--10355	12	3.9	12	81	8	53	4	12	12	70	1.29
10958--11051	46	2.1	45	91	2	152	37	8	27	26	1.85
16222--16264	3	14.7	3	80	4	52	60	2	4	32	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17887--18167	141	2.0	141	87	1	411	34	13	24	27	1.93
19166--19204	13	3.0	13	100	0	78	46	0	7	46	1.31
19522--20162	226	2.8	226	86	4	824	36	10	18	34	1.86
23582--23640	3	19.7	3	100	0	118	0	32	0	67	0.91
28327--28607	141	2.0	141	86	4	388	35	13	23	27	1.92
28641--29259	231	2.7	224	85	5	782	35	11	19	33	1.88
29590--29623	15	2.3	15	85	5	52	29	0	2	67	1.05
32763--33131	20	18.5	20	84	5	442	34	25	18	20	1.96
33814--33860	24	2.0	24	87	8	69	25	14	21	38	1.92
35949--36222	19	15.4	19	81	15	354	47	18	20	14	1.83
35949--36244	71	4.2	74	82	13	314	46	18	20	14	1.83
35977--36244	109	2.5	104	90	6	446	46	17	21	14	1.83
35949--36260	161	2.0	157	91	5	502	46	18	20	15	1.84
35977--36244	52	5.0	52	90	4	437	46	17	21	14	1.83
36251--36352	19	5.6	19	85	12	151	14	23	17	44	1.86
36458--36494	14	2.6	14	91	0	65	45	21	0	32	1.52
38380--38444	18	3.4	19	83	10	80	44	27	16	10	1.81
38380--38512	19	7.6	19	73	19	110	45	24	19	11	1.83
38416--38507	33	2.8	33	95	1	168	46	21	20	10	1.81
38508--38636	19	7.3	19	75	17	125	8	17	28	45	1.77
38508--38599	33	2.8	33	93	3	150	7	18	28	45	1.76
38680--39142	93	5.1	93	95	4	831	45	18	12	22	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40841--40930	14	5.7	14	72	23	72	42	22	25	10	1.84
40833--40947	33	3.5	33	92	0	203	45	20	24	10	1.82
40840--40952	19	6.8	18	70	23	79	43	21	24	10	1.84
40964--41017	14	3.6	14	77	18	63	9	25	24	40	1.85
40959--41005	18	2.9	17	75	18	55	8	23	23	44	1.80
41138--41208	33	2.2	33	92	0	115	47	18	22	11	1.80
41387--41441	22	2.5	22	81	0	74	20	16	40	23	1.91
41586--41778	20	9.6	20	80	5	210	19	19	25	35	1.95
41586--41778	60	3.2	60	82	0	242	19	19	25	35	1.95
41834--41885	20	2.6	20	96	0	95	21	13	26	38	1.90
46562--46651	14	5.7	14	74	23	81	42	23	25	8	1.83
46554--46668	33	3.5	33	95	0	212	45	20	24	9	1.81
46561--46673	19	6.8	18	72	23	88	43	22	24	9	1.83
46685--46739	14	3.6	14	73	21	56	9	25	23	41	1.83
46669--46739	33	2.2	33	94	0	124	8	22	25	43	1.81
46680--46761	33	2.5	33	89	2	119	9	25	21	42	1.84
46692--46780	20	4.8	20	72	19	75	12	24	19	43	1.85
46860--46930	33	2.2	33	92	0	115	47	18	22	11	1.80
47110--47164	22	2.5	22	81	0	74	20	16	40	23	1.91
47310--47502	20	9.6	20	82	5	219	19	19	25	35	1.95
47310--47502	60	3.2	60	83	0	251	19	19	25	35	1.95
47558--47609	20	2.6	20	96	0	95	21	13	26	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56178--56215	19	2.0	19	100	0	76	15	15	10	57	1.64
60782--60831	26	1.9	26	84	8	66	32	6	10	52	1.59
63125--63195	30	2.4	30	100	0	142	29	2	36	30	1.72
72240--72281	17	2.5	17	80	7	50	40	4	2	52	1.35
72479--72609	32	3.9	34	87	10	164	42	12	13	30	1.82
72479--72609	36	3.9	33	83	10	142	42	12	13	30	1.82
73320--73400	23	3.8	21	72	20	69	19	2	3	74	1.09
73336--73407	5	14.8	5	70	11	51	18	2	4	75	1.09
76350--76452	18	5.6	18	70	16	61	78	3	14	2	1.01
76353--76428	15	5.0	14	77	20	73	80	3	13	2	0.96
76353--76428	7	10.0	7	78	18	73	80	3	13	2	0.96

Tables:   1

The End!