Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002999.1 Hibiscus syriacus cultivar Beakdansim tig00006203_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58775
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:497 original size:84 final size:82
Alignment explanation
Indices: 355--621 Score: 298
Period size: 80 Copynumber: 3.3 Consensus size: 82
345 GATACCATTT
* * * * *
355 TTGCCTTGAGATAAGCTGCAAATG---TGCCTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTT
1 TTGCCTTGAGTTATGTTGCAAATGATATGCCTTGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTT
417 GTTGGCTGATAACCCTTC
66 GTTGGCT-ATAACCCTTC
* * * * *
435 TAGCATTGAGTTATGTTGCAAATGATTTGCCTTGGAGCTAAGCGTAGTCGAACTCGAAGGTCTTC
1 TTGCCTTGAGTTATGTTGCAAATGATATGCCTT-GAGCTGAGCGTAGTCGAACTCGAAGGTCTTT
** *
500 AATTGGCATATAACCCTTT
65 TGTTGGC-TATAACCCTTC
*
519 TTGCCTTGAGTTA---TGCAAA-AATATGCCTTTGAGCTGAGCGTAGTCGAACTCGAAGGTCTTT
1 TTGCCTTGAGTTATGTTGCAAATGATATGCC-TTGAGCTGAGCGTAGTCGAACTCGAAGGTCTTT
*
580 TGTTGGCAATAA-CCTTC
65 TGTTGGCTATAACCCTTC
*
597 TTGCCTTGAGCTATGTTGCAAATGA
1 TTGCCTTGAGTTATGTTGCAAATGA
622 ACACGATATC
Statistics
Matches: 153, Mismatches: 24, Indels: 18
0.78 0.12 0.09
Matches are distributed among these distances:
78 16 0.10
79 4 0.03
80 59 0.39
81 14 0.09
82 1 0.01
83 6 0.04
84 52 0.34
85 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (82 bp):
TTGCCTTGAGTTATGTTGCAAATGATATGCCTTGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTT
GTTGGCTATAACCCTTC
Found at i:586 original size:80 final size:80
Alignment explanation
Indices: 374--611 Score: 277
Period size: 84 Copynumber: 3.0 Consensus size: 80
364 GATAAGCTGC
* * * *
374 AAATGTGCC-TTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGC-TGATAACCCTTCTA
1 AAATATGCCTTTGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGTTGGCAT-ATAACCCTTCTT
*
437 GCATTGAGTTATGTTGCAA
65 GCCTTGAGTTA---TGCAA
* * * * *** *
456 ATGATTTGCCTTGGAGCTAAGCGTAGTCGAACTCGAAGGTCTTCAATTGGCATATAACCCTTTTT
1 A-AATATGCCTTTGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGTTGGCATATAACCCTTCTT
521 GCCTTGAGTTATGCAA
65 GCCTTGAGTTATGCAA
537 AAATATGCCTTTGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGTTGGCA-ATAA-CCTTCTTG
1 AAATATGCCTTTGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGTTGGCATATAACCCTTCTTG
*
600 CCTTGAGCTATG
66 CCTTGAGTTATG
612 TTGCAAATGA
Statistics
Matches: 132, Mismatches: 21, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
78 18 0.14
79 4 0.03
80 43 0.33
81 6 0.05
82 1 0.01
83 6 0.05
84 53 0.40
85 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.34
Consensus pattern (80 bp):
AAATATGCCTTTGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGTTGGCATATAACCCTTCTTG
CCTTGAGTTATGCAA
Found at i:926 original size:110 final size:111
Alignment explanation
Indices: 777--980 Score: 347
Period size: 111 Copynumber: 1.8 Consensus size: 111
767 ATCCAATCTG
* *
777 AAGATGAATGTTGGTGGGCACGATTCCCCTCATCATGAAGTTGAAAC-GTAGATGGCCCCTTCGT
1 AAGATGAATGTTGGTGAGCAAGATTCCCCTCATCATGAAGTTGAAACTGTAGATGGCCCCTTCGT
841 TGTGAAGTTGAGCCTTGAATTGGATATCCGTAAGTTAAATCCATAA
66 TGTGAAGTTGAGCCTTGAATTGGATATCCGTAAGTTAAATCCATAA
* * * *
887 AAGATGAATGTTGGTGAGCAAGATTCCCTTCGTCGTGAAGTTGAAACTGTGGATGGCCCCTTCGT
1 AAGATGAATGTTGGTGAGCAAGATTCCCCTCATCATGAAGTTGAAACTGTAGATGGCCCCTTCGT
952 TGTGAAGTTGAGCCTTGAATTGGATATCC
66 TGTGAAGTTGAGCCTTGAATTGGATATCC
981 TTCGTCGTGA
Statistics
Matches: 87, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
110 42 0.48
111 45 0.52
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (111 bp):
AAGATGAATGTTGGTGAGCAAGATTCCCCTCATCATGAAGTTGAAACTGTAGATGGCCCCTTCGT
TGTGAAGTTGAGCCTTGAATTGGATATCCGTAAGTTAAATCCATAA
Found at i:1294 original size:237 final size:239
Alignment explanation
Indices: 937--1376 Score: 663
Period size: 237 Copynumber: 1.8 Consensus size: 239
927 TTGAAACTGT
* * * *
937 GGATGGCCCCTTCGTTGTGAAGTTGAGCCTTGAATTGGATATCCTTCGTCGTGAAGTTGAAATCC
1 GGATGGACCATTCGTTGTGAAGTTGAGCCTTGAATTGAATATCCTTCGTCGTGAAGTTAAAATCC
* *
1002 AATCTAAAGATTTATTACTTCGAGTCCAATATCCTTCACCGTGAAGTTGAAATTGGCTCTGAATG
66 AAGCT----ATGTATTACTTCGAGTCCAATATCCTTCACCGTGAAGTTGAAATTGGCTCTGAATG
*
1067 AAACTGGGAAG-CCCTTCGCCGTGAAGTTGAGCTTTGAATTGGATAT-CTTCATCGTGAAGTTGA
127 -AACTGGGAAGCCCCTTCGCCGTGAAGTTGAGCTTTGAATTGGATATCCTTCATCGTGAAG-TAA
1130 AATCCAATCTAGAGTTGGTATGATATCCTTTACTATGAATTTGAAATCGC
190 AATCCAATCTAGAGTTGGTATGATATCCTTTACTATGAATTTGAAATCGC
* *
1180 GGATGGACCATTCGTTGTGAAGTTGAGCCTTGACTTGAATATCC-TCTTCGTGAAGTTAAAATCC
1 GGATGGACCATTCGTTGTGAAGTTGAGCCTTGAATTGAATATCCTTCGTCGTGAAGTTAAAATCC
** * * *
1244 AAGCT-TGTATTGTTTCGAGTCCAATATCTTTCGCCGTGAAGTTGAAATTGGCTTTGAATGAACT
66 AAGCTATGTATTACTTCGAGTCCAATATCCTTCACCGTGAAGTTGAAATTGGCTCTGAATGAACT
*
1308 GGGAAGCCCCTTCGCCGTGAAGTTGAGCTTTGAATTGGATATCCTTCGTCGTGAAGTAAAATCCA
131 GGGAAGCCCCTTCGCCGTGAAGTTGAGCTTTGAATTGGATATCCTTCATCGTGAAGTAAAATCCA
1373 ATCT
196 ATCT
1377 TGTGTAGATG
Statistics
Matches: 180, Mismatches: 15, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
236 10 0.06
237 96 0.53
238 12 0.07
242 22 0.12
243 40 0.22
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (239 bp):
GGATGGACCATTCGTTGTGAAGTTGAGCCTTGAATTGAATATCCTTCGTCGTGAAGTTAAAATCC
AAGCTATGTATTACTTCGAGTCCAATATCCTTCACCGTGAAGTTGAAATTGGCTCTGAATGAACT
GGGAAGCCCCTTCGCCGTGAAGTTGAGCTTTGAATTGGATATCCTTCATCGTGAAGTAAAATCCA
ATCTAGAGTTGGTATGATATCCTTTACTATGAATTTGAAATCGC
Found at i:2787 original size:93 final size:94
Alignment explanation
Indices: 2623--2805 Score: 239
Period size: 95 Copynumber: 2.0 Consensus size: 94
2613 CATAAAACCA
* *
2623 GGGCGTTTAACCAATTGCTCTAAAGGGACAACTTAATATCATTGTATAGATATTAATCGCCTTTA
1 GGGCGTTTAACCAATTGCTCTAAAGGGACAACTCAATATCATTGTATAGATATTAATCACCTTTA
2688 TCAAGCTAGCTTAATATTATCCATAAAGCGGG
66 TCAAGCTAG---AATATTATCCATAAAGCGGG
* * * * *
2720 GGGCGTTTAA-CAATTGCT-TAGAGGGACAACTCATTTTTATTGTATA-TTA-TAATCACCTTTA
1 GGGCGTTTAACCAATTGCTCTAAAGGGACAACTCAATATCATTGTATAGATATTAATCACCTTTA
*
2781 TCAAGCTAGAATCTTATCCATAAAG
66 TCAAGCTAGAATATTATCCATAAAG
2806 TCTGTGTTAA
Statistics
Matches: 78, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
90 15 0.19
93 20 0.26
94 2 0.03
95 23 0.29
96 8 0.10
97 10 0.13
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (94 bp):
GGGCGTTTAACCAATTGCTCTAAAGGGACAACTCAATATCATTGTATAGATATTAATCACCTTTA
TCAAGCTAGAATATTATCCATAAAGCGGG
Found at i:3755 original size:16 final size:18
Alignment explanation
Indices: 3736--3783 Score: 64
Period size: 19 Copynumber: 2.7 Consensus size: 18
3726 AAAATGTCTG
3736 TTATT-ATA-AATAAACC
1 TTATTGATACAATAAACC
3752 TTATTGGATACAATAAACC
1 TTATT-GATACAATAAACC
3771 TTATTGGATACAA
1 TTATT-GATACAA
3784 AAGTGTTATG
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
16 5 0.17
18 3 0.10
19 21 0.72
ACGTcount: A:0.44, C:0.12, G:0.08, T:0.35
Consensus pattern (18 bp):
TTATTGATACAATAAACC
Found at i:3768 original size:19 final size:19
Alignment explanation
Indices: 3744--3783 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
3734 TGTTATTATA
3744 AATAAACCTTATTGGATAC
1 AATAAACCTTATTGGATAC
3763 AATAAACCTTATTGGATAC
1 AATAAACCTTATTGGATAC
3782 AA
1 AA
3784 AAGTGTTATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.45, C:0.15, G:0.10, T:0.30
Consensus pattern (19 bp):
AATAAACCTTATTGGATAC
Found at i:6940 original size:3 final size:3
Alignment explanation
Indices: 6932--6956 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
6922 ACATGTATAC
6932 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
6957 AAACGTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:8056 original size:60 final size:60
Alignment explanation
Indices: 7963--8098 Score: 157
Period size: 60 Copynumber: 2.3 Consensus size: 60
7953 AATATGTAAT
**
7963 TAATTTCATCCCCAAACTATAACTTTCATTCTAAATTAG-TCCTAAAACTTTTGAACATTC
1 TAATTTCATCCCCAAACTATAACCCTCATTCTAAATTAGTTCC-AAAACTTTTGAACATTC
* * * * * **
8023 TAATTTCATCCCTAAACTATGACCCTCTTTCTAAATTGGTTCCCAAACTTTTGAATTTTC
1 TAATTTCATCCCCAAACTATAACCCTCATTCTAAATTAGTTCCAAAACTTTTGAACATTC
* *
8083 CAATTTCATCTCCAAA
1 TAATTTCATCCCCAAA
8099 TTCATCCAAA
Statistics
Matches: 63, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
60 60 0.95
61 3 0.05
ACGTcount: A:0.32, C:0.25, G:0.04, T:0.39
Consensus pattern (60 bp):
TAATTTCATCCCCAAACTATAACCCTCATTCTAAATTAGTTCCAAAACTTTTGAACATTC
Found at i:13710 original size:24 final size:24
Alignment explanation
Indices: 13683--13740 Score: 68
Period size: 22 Copynumber: 2.5 Consensus size: 24
13673 ATGGAACAAG
**
13683 TAAAAAATGATAAATAAAATTGAA
1 TAAAAAATGATAAATAAAAAAGAA
*
13707 TAAAAAAT-A-AATTAAAAAAGAA
1 TAAAAAATGATAAATAAAAAAGAA
13729 TAAAAAA-GATAA
1 TAAAAAATGATAA
13741 TTTAAAGAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
22 18 0.62
23 3 0.10
24 8 0.28
ACGTcount: A:0.72, C:0.00, G:0.07, T:0.21
Consensus pattern (24 bp):
TAAAAAATGATAAATAAAAAAGAA
Found at i:14206 original size:12 final size:12
Alignment explanation
Indices: 14188--14222 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
14178 CCTGTATAAA
14188 ACCGGCCACC-C
1 ACCGGCCACCGC
14199 AGCCGGCCACCGC
1 A-CCGGCCACCGC
14212 ACCGGCCACCG
1 ACCGGCCACCG
14223 TCGACGGTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 1 0.05
12 19 0.86
13 2 0.09
ACGTcount: A:0.17, C:0.57, G:0.26, T:0.00
Consensus pattern (12 bp):
ACCGGCCACCGC
Found at i:15145 original size:37 final size:37
Alignment explanation
Indices: 15095--15297 Score: 185
Period size: 38 Copynumber: 5.6 Consensus size: 37
15085 TGAAATGTTT
* **
15095 TTTTAAAAAACTATTTATTATACGTATTTTCAAAAACG
1 TTTT-AAAAACTATATATTATATATATTTTCAAAAACG
* *
15133 TTTTAAAAACTATATAATATATATATTTTCAAAAATG
1 TTTTAAAAACTATATATTATATATATTTTCAAAAACG
15170 TCTTTAAAAACTATATATTATATATATTTTC-AAAACG
1 T-TTTAAAAACTATATATTATATATATTTTCAAAAACG
*
15207 TTTTTTAAAAAC--TATA-TA-ATATA---T---AAATG
1 --TTTTAAAAACTATATATTATATATATTTTCAAAAACG
* ** **
15236 TTTTCAAAACTATATATTATATAAGTTTTCAAAATGTG
1 TTTTAAAAACTATATATTATATATATTTTCAAAA-ACG
15274 TTTTAAAAACTATATATTATATAT
1 TTTTAAAAACTATATATTATATAT
15298 GTGTTTTTTT
Statistics
Matches: 137, Mismatches: 14, Indels: 28
0.77 0.08 0.16
Matches are distributed among these distances:
27 9 0.07
29 8 0.06
30 2 0.01
31 4 0.03
34 6 0.04
35 2 0.01
36 4 0.03
37 36 0.26
38 65 0.47
39 1 0.01
ACGTcount: A:0.44, C:0.07, G:0.04, T:0.44
Consensus pattern (37 bp):
TTTTAAAAACTATATATTATATATATTTTCAAAAACG
Found at i:15245 original size:65 final size:66
Alignment explanation
Indices: 15165--15296 Score: 205
Period size: 65 Copynumber: 2.0 Consensus size: 66
15155 ATATTTTCAA
*
15165 AAATGTCTTTAAAAACTATATATTATATATA-TTTTCAAAACGTTTTTTAAAAACTATATAATAT
1 AAATGTCTTTAAAAACTATATATTATATA-AGTTTTCAAAACGTGTTTTAAAAACTATATAATAT
15229 AT
65 AT
* * *
15231 AAATGT-TTTCAAAACTATATATTATATAAGTTTTCAAAATGTGTTTTAAAAACTATATATTATA
1 AAATGTCTTTAAAAACTATATATTATATAAGTTTTCAAAACGTGTTTTAAAAACTATATAATATA
15295 T
66 T
15296 A
1 A
15297 TGTGTTTTTT
Statistics
Matches: 61, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
64 1 0.02
65 54 0.89
66 6 0.10
ACGTcount: A:0.45, C:0.07, G:0.05, T:0.44
Consensus pattern (66 bp):
AAATGTCTTTAAAAACTATATATTATATAAGTTTTCAAAACGTGTTTTAAAAACTATATAATATA
T
Found at i:15256 original size:25 final size:27
Alignment explanation
Indices: 15209--15269 Score: 83
Period size: 25 Copynumber: 2.3 Consensus size: 27
15199 TCAAAACGTT
*
15209 TTTTAAAAACTATATAATATATA-AATG
1 TTTTCAAAACTATATAATATATATAA-G
15236 TTTTCAAAACTATAT-AT-TATATAAG
1 TTTTCAAAACTATATAATATATATAAG
15261 TTTTCAAAA
1 TTTTCAAAA
15270 TGTGTTTTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
25 14 0.44
26 4 0.12
27 14 0.44
ACGTcount: A:0.48, C:0.07, G:0.03, T:0.43
Consensus pattern (27 bp):
TTTTCAAAACTATATAATATATATAAG
Found at i:16087 original size:84 final size:84
Alignment explanation
Indices: 15951--16536 Score: 682
Period size: 84 Copynumber: 7.0 Consensus size: 84
15941 GCTGTGAACT
* * * * * * * * *
15951 TGATTTGCCTTTGAGCTGAGTGTAATCGAACTCAAAGGTCCTCGGTTGGCAGATAGCTCTTCTCG
1 TGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCG
* **
16016 ACTTAAGCTATGCTGCAGG
66 ACTTAAGTTATGCTGCAAA
* * * *
16035 TGATGTGCCTTGGAGCTAAGCGTAGTCAAACTCGAAGGTCTTTGGTTAGCAGATAACCCTTCTCG
1 TGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCG
*
16100 AGTTAAGTTATGCTGCAAA
66 ACTTAAGTTATGCTGCAAA
* * *
16119 TGATATGCCTTAGAGCTGAGTGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATATCCCTTCTCG
1 TGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCG
*
16184 ACTTAAGTTATACTGCAAA
66 ACTTAAGTTATGCTGCAAA
* * * *
16203 TGATGTGCCGTT-GAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGG-TGACAGATAACCCTTCTA
1 TGATATGCC-TTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTC
* * * *
16266 GCCTTGAGTTATGTTGTAAA
65 GACTTAAGTTATGCTGCAAA
* * * * ** *
16286 TGATATGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGG-T---AGATAGCCCTTCTC
1 TGATATG-CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTC
* *
16347 TACTTAAGCTATGCTGCAAA
65 GACTTAAGTTATGCTGCAAA
* * * * * *
16367 TGATGTGCCGTT-GAGCTGAGCATAGTCGAACTCAAAGGTCTTTTGTTGGCAGACAACCCTTCTA
1 TGATATGCC-TTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTC
*
16431 GACTTAAGTTGTGCTGCAAA
65 GACTTAAGTTATGCTGCAAA
16451 TGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCG
1 TGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCG
*
16516 ATTTAAGTTATGCTGCAAA
66 ACTTAAGTTATGCTGCAAA
16535 TG
1 TG
16537 TTGTCTTTTA
Statistics
Matches: 417, Mismatches: 76, Indels: 18
0.82 0.15 0.04
Matches are distributed among these distances:
80 27 0.06
81 34 0.08
83 39 0.09
84 315 0.76
85 2 0.00
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (84 bp):
TGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCG
ACTTAAGTTATGCTGCAAA
Found at i:16243 original size:168 final size:168
Alignment explanation
Indices: 15951--16536 Score: 770
Period size: 168 Copynumber: 3.5 Consensus size: 168
15941 GCTGTGAACT
* * * * * *
15951 TGATTTGCCTTTGAGCTGAGTGTAATCGAACTCAAAGGTCCTCGGTTGGCAGATAGCTCTTCTCG
1 TGATATGCCTTAGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGTTGGCAGATAGCCCTTCTCG
** * * *
16016 ACTTAAGCTATGCTGCAGGTGATGTGCC-TTGGAGCTAAGCGTAGTCAAACTCGAAGGTCTTTGG
66 ACTTAAGCTATGCTGCAAATGATGTGCCGTT-GAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGG
* *
16080 TTAGCAGATAACCCTTCTCGAGTTAAGTTATGCTGCAAA
130 TTAGCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAA
* *
16119 TGATATGCCTTAGAGCTGAGTGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATATCCCTTCTCG
1 TGATATGCCTTAGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGTTGGCAGATAGCCCTTCTCG
* *
16184 ACTTAAGTTATACTGCAAATGATGTGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGT
66 ACTTAAGCTATGCTGCAAATGATGTGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGT
* * * * *
16249 GA-CAGATAACCCTTCTAGCCTTGAGTTATGTTGTAAA
131 TAGCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAA
* * **
16286 TGATATGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGG-T---AGATAGCCCTTCTC
1 TGATATGCCTTAG-AGCTGAGTGTAATCGAACTCGAAGGTCTTTGGTTGGCAGATAGCCCTTCTC
* * *
16347 TACTTAAGCTATGCTGCAAATGATGTGCCGTTGAGCTGAGCATAGTCGAACTCAAAGGTCTTTTG
65 GACTTAAGCTATGCTGCAAATGATGTGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGG
* * *
16412 TTGGCAGACAACCCTTCTAGACTTAAGTTGTGCTGCAAA
130 TTAGCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAA
* * * *
16451 TGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCG
1 TGATATGCCTTAGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGTTGGCAGATAGCCCTTCTCG
* *
16516 ATTTAAGTTATGCTGCAAATG
66 ACTTAAGCTATGCTGCAAATG
16537 TTGTCTTTTA
Statistics
Matches: 360, Mismatches: 51, Indels: 14
0.85 0.12 0.03
Matches are distributed among these distances:
164 102 0.28
165 41 0.11
167 41 0.11
168 174 0.48
169 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (168 bp):
TGATATGCCTTAGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGTTGGCAGATAGCCCTTCTCG
ACTTAAGCTATGCTGCAAATGATGTGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGT
TAGCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAA
Found at i:16373 original size:332 final size:335
Alignment explanation
Indices: 15911--16536 Score: 902
Period size: 332 Copynumber: 1.9 Consensus size: 335
15901 GACAATTTAT
* * * * * *
15911 TGACAGATAGCCCTTCTTGCCTTGAGCTATGCTGTGAACTTGATTTGCCTTTGAGCTGAGTGTAA
1 TGACAGATAACCCTTCTAGCCTTGAGCTATGCTGTGAACATGATATGCCCTCGAGCTGAGTGTAA
* **
15976 TCGAACTCAAAGGTCCTCGGTTGGCAGATAGCTCTTCTCGACTTAAGCTATGCTGCAGGTGATGT
66 TCGAACTCAAAGGTCCT--GTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGT
* * * * *
16041 GCC-TTGGAGCTAAGCGTAGTCAAACTCGAAGGTCTTTGGTTAGCAGATAACCCTTCTCGAGTTA
129 GCCGTT-GAGCTAAGCATAGTCAAACTCAAAGGTCTTTGGTTAGCAGACAACCCTTCTAGACTTA
*
16105 AGTTATGCTGCAAATGATATGCCTTAGAGCTGAGTGTAGTCGAACTCGAAGGTCTTTGGTTGGCA
193 AGTTATGCTGCAAATGATATGCCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCA
*
16170 GATATCCCTTCTCGACTTAAGTTATACTGCAAATGATGTGCCGTTGAGCTGAGCGTAGTCGAACT
258 GATAACCCTTCTCGACTTAAGTTATACTGCAAATGATGTGCCGTTGAGCTGAGCGTAGTCGAACT
16235 CAAAGGTCTTTGG
323 CAAAGGTCTTTGG
* *
16248 TGACAGATAACCCTTCTAGCCTTGAGTTATGTTGT-AA-ATGATATGCCCTCGAAGCTGAGTGTA
1 TGACAGATAACCCTTCTAGCCTTGAGCTATGCTGTGAACATGATATGCCCTCG-AGCTGAGTGTA
*** * *
16311 ATCGAACTCGGGGGT-CT-TTGGTAGATAGCCCTTCTCTACTTAAGCTATGCTGCAAATGATGTG
65 ATCGAACTCAAAGGTCCTGTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
* * * *
16374 CCGTTGAGCTGAGCATAGTCGAACTCAAAGGTCTTTTGTTGGCAGACAACCCTTCTAGACTTAAG
130 CCGTTGAGCTAAGCATAGTCAAACTCAAAGGTCTTTGGTTAGCAGACAACCCTTCTAGACTTAAG
* *
16439 TTGTGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGA
195 TTATGCTGCAAATGATATGCCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGA
* *
16504 TAACCCTTCTCGATTTAAGTTATGCTGCAAATG
260 TAACCCTTCTCGACTTAAGTTATACTGCAAATG
16537 TTGTCTTTTA
Statistics
Matches: 256, Mismatches: 31, Indels: 9
0.86 0.10 0.03
Matches are distributed among these distances:
332 186 0.73
333 2 0.01
335 12 0.05
336 25 0.10
337 31 0.12
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (335 bp):
TGACAGATAACCCTTCTAGCCTTGAGCTATGCTGTGAACATGATATGCCCTCGAGCTGAGTGTAA
TCGAACTCAAAGGTCCTGTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGC
CGTTGAGCTAAGCATAGTCAAACTCAAAGGTCTTTGGTTAGCAGACAACCCTTCTAGACTTAAGT
TATGCTGCAAATGATATGCCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGAT
AACCCTTCTCGACTTAAGTTATACTGCAAATGATGTGCCGTTGAGCTGAGCGTAGTCGAACTCAA
AGGTCTTTGG
Found at i:21288 original size:6 final size:6
Alignment explanation
Indices: 21277--21302 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
21267 ATCGAATAAA
21277 TAAATT TAAATT TAAATT TAAATT TA
1 TAAATT TAAATT TAAATT TAAATT TA
21303 TAACTTTCGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
TAAATT
Found at i:23257 original size:37 final size:37
Alignment explanation
Indices: 23216--23452 Score: 195
Period size: 37 Copynumber: 6.4 Consensus size: 37
23206 TGAAATGTTT
*
23216 TTTTAAAAACTATATATTATACGTATTTTCAAAAACG
1 TTTTAAAAACTATATATTATACGTATTTTCAAAAATG
* **
23253 TTTTAAAAACTATATAATATATATATTTTCAAAAATG
1 TTTTAAAAACTATATATTATACGTATTTTCAAAAATG
* * *
23290 TCTTTAAAAACTATATA-T-TACATATATTTCAAAACGTT
1 T-TTTAAAAACTATATATTATACGTAT-TTTCAAAA-ATG
23328 TTTTAAAAACTATATAATATATAAACG--TTTTCAAAAATG
1 TTTTAAAAACTATAT-AT-TAT--ACGTATTTTCAAAAATG
*
23367 TTTTCAAAACTATATATTATA--TAAGTTTTC-AAAATG
1 TTTTAAAAACTATATATTATACGT-A-TTTTCAAAAATG
* * * *
23403 TTTTTTAAAACTATATA-TATATGTTTTTTTAAAAAATG
1 -TTTTAAAAACTATATATTATACG-TATTTTCAAAAATG
*
23441 -TTTACAAACTAT
1 TTTTAAAAACTAT
23453 TAATATATAT
Statistics
Matches: 166, Mismatches: 16, Indels: 37
0.76 0.07 0.17
Matches are distributed among these distances:
35 1 0.01
36 26 0.16
37 84 0.51
38 26 0.16
39 16 0.10
40 9 0.05
41 2 0.01
43 2 0.01
ACGTcount: A:0.44, C:0.08, G:0.04, T:0.43
Consensus pattern (37 bp):
TTTTAAAAACTATATATTATACGTATTTTCAAAAATG
Found at i:23302 original size:75 final size:74
Alignment explanation
Indices: 23216--23424 Score: 266
Period size: 75 Copynumber: 2.8 Consensus size: 74
23206 TGAAATGTTT
*
23216 TTTTAAAAACTATATATTATACGTATTTTCAAAAACG-TTTTAAAAACTATATAATATATATA-T
1 TTTTAAAAACTATATATTATAC-TATTTTC-AAAACGTTTTTAAAAACTATATAATATATAAACT
23279 TTTCAAAAATG
64 TTTCAAAAATG
*
23290 TCTTTAAAAACTATATATTACA-TATATTTCAAAACGTTTTTTAAAAACTATATAATATATAAAC
1 T-TTTAAAAACTATATATTATACTAT-TTTCAAAACG-TTTTTAAAAACTATATAATATATAAAC
23354 GTTTTCAAAAATG
63 -TTTTCAAAAATG
* * *
23367 TTTTCAAAACTATATATTATA-TAAGTTTTCAAAATGTTTTTTAAAACTATAT-ATATAT
1 TTTTAAAAACTATATATTATACT-A-TTTTCAAAACGTTTTTAAAAACTATATAATATAT
23425 GTTTTTTTAA
Statistics
Matches: 121, Mismatches: 6, Indels: 15
0.85 0.04 0.11
Matches are distributed among these distances:
73 9 0.07
74 5 0.04
75 49 0.40
76 34 0.28
77 23 0.19
78 1 0.01
ACGTcount: A:0.44, C:0.09, G:0.04, T:0.43
Consensus pattern (74 bp):
TTTTAAAAACTATATATTATACTATTTTCAAAACGTTTTTAAAAACTATATAATATATAAACTTT
TCAAAAATG
Found at i:23462 original size:2 final size:2
Alignment explanation
Indices: 23455--23485 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
23445 CAAACTATTA
*
23455 AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
23486 AAAATATGGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:24946 original size:3 final size:3
Alignment explanation
Indices: 24934--24984 Score: 86
Period size: 3 Copynumber: 17.0 Consensus size: 3
24924 TTGTGTTACA
24934 TAT TATT TAT TAT TAT TAT TAT TAT TA- TAT TAT TAT TAT TAT TAT
1 TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
24979 TAT TAT
1 TAT TAT
24985 GTAGAGTATT
Statistics
Matches: 46, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
2 2 0.04
3 41 0.89
4 3 0.07
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:24966 original size:20 final size:20
Alignment explanation
Indices: 24934--24981 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
24924 TTGTGTTACA
24934 TATTATT-TATTATTATTAT
1 TATTATTATATTATTATTAT
24953 TATTATTATATTATTATTAT
1 TATTATTATATTATTATTAT
24973 TATTATTAT
1 TATTATTAT
24982 TATGTAGAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
19 7 0.25
20 21 0.75
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (20 bp):
TATTATTATATTATTATTAT
Found at i:29137 original size:7 final size:7
Alignment explanation
Indices: 29121--29164 Score: 52
Period size: 7 Copynumber: 6.0 Consensus size: 7
29111 TTTTAAATAT
*
29121 TTTTATA
1 TTTTAAA
29128 TTTTAAA
1 TTTTAAA
29135 TTTTAAATA
1 TTTT-AA-A
*
29144 TTTTATA
1 TTTTAAA
29151 TTTTAAA
1 TTTTAAA
29158 TTTTAAA
1 TTTTAAA
29165 CATTTTTATT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
7 24 0.75
8 3 0.09
9 5 0.16
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (7 bp):
TTTTAAA
Found at i:29146 original size:16 final size:16
Alignment explanation
Indices: 29111--29158 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
29101 TTATATATAT
**
29111 TTTTAAATATTTTTATA
1 TTTTAAAT-TTTAAATA
29128 TTTTAAATTTTAAATA
1 TTTTAAATTTTAAATA
*
29144 TTTTATATTTTAAAT
1 TTTTAAATTTTAAAT
29159 TTTAAACATT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
16 20 0.71
17 8 0.29
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TTTTAAATTTTAAATA
Found at i:29151 original size:23 final size:23
Alignment explanation
Indices: 29111--29175 Score: 105
Period size: 23 Copynumber: 2.8 Consensus size: 23
29101 TTATATATAT
29111 TTTTAAATATTTTTATATTTTAAA
1 TTTTAAATA-TTTTATATTTTAAA
29135 TTTTAAATATTTTATATTTTAAA
1 TTTTAAATATTTTATATTTTAAA
*
29158 TTTTAAACATTTT-TATTT
1 TTTTAAATATTTTATATTT
29176 AAAAAATCAA
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
22 5 0.12
23 26 0.65
24 9 0.22
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (23 bp):
TTTTAAATATTTTATATTTTAAA
Found at i:29170 original size:16 final size:15
Alignment explanation
Indices: 29119--29164 Score: 58
Period size: 16 Copynumber: 3.1 Consensus size: 15
29109 ATTTTTAAAT
*
29119 ATTTTTATATTTTAA
1 ATTTTAATATTTTAA
*
29134 ATTTTAAATATTTTAT
1 ATTTT-AATATTTTAA
29150 ATTTTAA-ATTTTAA
1 ATTTTAATATTTTAA
29164 A
1 A
29165 CATTTTTATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 7 0.26
15 7 0.26
16 13 0.48
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
ATTTTAATATTTTAA
Found at i:31632 original size:23 final size:23
Alignment explanation
Indices: 31559--31632 Score: 87
Period size: 23 Copynumber: 3.2 Consensus size: 23
31549 TTTAAATAAT
*
31559 AAACAAATATAAACGAACACGAAC
1 AAACGAATATAAACGAACAC-AAC
* * *
31583 GAACGAACATAAACGAACACAAT
1 AAACGAATATAAACGAACACAAC
31606 AAACGAATATAAACGAACA-ACAC
1 AAACGAATATAAACGAACACA-AC
31629 AAAC
1 AAAC
31633 AAAAAAACTT
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
22 1 0.02
23 24 0.57
24 17 0.40
ACGTcount: A:0.61, C:0.22, G:0.09, T:0.08
Consensus pattern (23 bp):
AAACGAATATAAACGAACACAAC
Found at i:31919 original size:21 final size:20
Alignment explanation
Indices: 31885--31945 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
31875 GTTCGAACAT
*
31885 AAATGAACAACATAAATAAC
1 AAATAAACAACATAAATAAC
*
31905 AAATAAACAAACATAAACAAC
1 AAATAAAC-AACATAAATAAC
* * *
31926 ATATAATCAACGTAAATAAC
1 AAATAAACAACATAAATAAC
31946 GAAAAAACCC
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
20 17 0.50
21 17 0.50
ACGTcount: A:0.64, C:0.16, G:0.03, T:0.16
Consensus pattern (20 bp):
AAATAAACAACATAAATAAC
Found at i:37774 original size:121 final size:117
Alignment explanation
Indices: 37492--37730 Score: 304
Period size: 121 Copynumber: 2.0 Consensus size: 117
37482 TGTAATGAGA
* * *
37492 ACAACTTTTACTATTTGCTTCATCATGGCTTGTAGCAATAGTGCTT--GCTTGCATTTCTTGATC
1 ACAACTTTTACTA-TT--TTCATCATGGCTTGTAG-AATAAT-TTTAAACTTGCATTTCTTGATC
** *
37555 CATTATCATGAGTTACTATTCATCTTTGTTTTGGTGTTGTAGGGAATCTTGAATGCT
61 CATTATCATGAGTTACTATTCATCTTTGTTTTGGTGTTACAGGGAATCTTGAATGCC
*
37612 ACAACTTTTACTATTTTCATCATGGCTTGTAGGAACAATAATTTTAAACTTGTATTTCTTGATCC
1 ACAACTTTTACTATTTTCATCATGGCTTGTA-G---AATAATTTTAAACTTGCATTTCTTGATCC
37677 ATTATCATGTA-TTACTATTCATCTTTGTTTTGGTGTTACAGGGAATCTTGAATG
62 ATTATCATG-AGTTACTATTCATCTTTGTTTTGGTGTTACAGGGAATCTTGAATG
37731 TTTTTCCACA
Statistics
Matches: 107, Mismatches: 6, Indels: 11
0.86 0.05 0.09
Matches are distributed among these distances:
117 16 0.15
118 1 0.01
119 4 0.04
120 19 0.18
121 66 0.62
122 1 0.01
ACGTcount: A:0.24, C:0.15, G:0.16, T:0.44
Consensus pattern (117 bp):
ACAACTTTTACTATTTTCATCATGGCTTGTAGAATAATTTTAAACTTGCATTTCTTGATCCATTA
TCATGAGTTACTATTCATCTTTGTTTTGGTGTTACAGGGAATCTTGAATGCC
Found at i:50104 original size:20 final size:22
Alignment explanation
Indices: 50081--50159 Score: 76
Period size: 21 Copynumber: 3.7 Consensus size: 22
50071 TTGGTGCAGA
50081 GGGAATCGA-TCCCCCCATGA-
1 GGGAATCGATTCCCCCCATGAG
* **
50101 GGG-ACCGATTCCCCCTTTGAAG
1 GGGAATCGATTCCCCCCATG-AG
*
50123 GGGAATCGATTCCCCCCA-CAG
1 GGGAATCGATTCCCCCCATGAG
*
50144 GGGAATCGATACCCCC
1 GGGAATCGATTCCCCC
50160 TGGGGTTCTG
Statistics
Matches: 47, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
19 4 0.09
20 11 0.23
21 18 0.38
22 3 0.06
23 11 0.23
ACGTcount: A:0.23, C:0.35, G:0.25, T:0.16
Consensus pattern (22 bp):
GGGAATCGATTCCCCCCATGAG
Found at i:54858 original size:2 final size:2
Alignment explanation
Indices: 54851--54876 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
54841 ACGATTTTCC
54851 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
54877 CACTGGTGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:55760 original size:50 final size:50
Alignment explanation
Indices: 55706--55861 Score: 197
Period size: 50 Copynumber: 3.1 Consensus size: 50
55696 TGTACCTGAT
* **
55706 CCGCGCTATACCCACGTGGCGCCAGCTCACCGTATAGCGTGCTGTTGGGG
1 CCGCGCTATACCCACGTGGCGCCAGCTCACCGTATAGCGCGCTGCAGGGG
* * *
55756 CCGCGCTATATCCACGTGACGCCAGCTCACCGTATAGCGCGGTGCAGGGG
1 CCGCGCTATACCCACGTGGCGCCAGCTCACCGTATAGCGCGCTGCAGGGG
* * ** * *
55806 GCGCGTTATACCCACGTGGCGCCAAATCATCGTATAGCGCGGTGCAGGGG
1 CCGCGCTATACCCACGTGGCGCCAGCTCACCGTATAGCGCGCTGCAGGGG
55856 -CGCGCT
1 CCGCGCT
55862 TTACTGCTAA
Statistics
Matches: 92, Mismatches: 14, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
49 5 0.05
50 87 0.95
ACGTcount: A:0.17, C:0.33, G:0.33, T:0.18
Consensus pattern (50 bp):
CCGCGCTATACCCACGTGGCGCCAGCTCACCGTATAGCGCGCTGCAGGGG
Found at i:58601 original size:22 final size:22
Alignment explanation
Indices: 58576--58666 Score: 155
Period size: 22 Copynumber: 4.1 Consensus size: 22
58566 ATGTCTTGAA
*
58576 GACCACTAGATACGTCCCGAAG
1 GACCACTGGATACGTCCCGAAG
58598 GACCACTGGATACGTCCCGAAG
1 GACCACTGGATACGTCCCGAAG
*
58620 GACCACTGGATACGTCTCGAAG
1 GACCACTGGATACGTCCCGAAG
*
58642 GACCACTGGATACGTCCTGAAG
1 GACCACTGGATACGTCCCGAAG
58664 GAC
1 GAC
58667 TAATATACCC
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 65 1.00
ACGTcount: A:0.29, C:0.30, G:0.26, T:0.15
Consensus pattern (22 bp):
GACCACTGGATACGTCCCGAAG
Done.