Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000003.1 Hibiscus syriacus cultivar Beakdansim tig00000008_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105507

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2388--2501
56
2.1
55
86
1
156
28
14
31
24
1.95
9308--9376
29
2.4
29
100
0
138
50
10
11
27
1.70
20710--20777
15
4.9
14
84
15
97
48
14
17
19
1.81
20703--20777
27
2.7
27
95
2
132
46
16
18
18
1.84
23071--23110
21
1.9
21
94
0
71
30
15
7
47
1.72
23105--23203
33
3.0
33
94
1
164
32
7
15
45
1.73
23439--23495
21
2.7
21
86
0
87
19
24
26
29
1.98
23662--23717
15
3.6
15
79
9
67
32
12
12
42
1.80
23681--23714
18
1.9
18
94
5
61
38
11
11
38
1.79
23808--23839
16
2.0
17
88
11
50
43
21
21
12
1.86
24479--24533
22
2.5
22
100
0
110
14
41
0
43
1.45
36137--36202
17
4.1
17
66
16
50
75
1
1
21
0.96
36187--36256
26
2.7
26
77
18
67
71
2
8
17
1.23
36326--36386
28
2.1
28
82
11
70
55
1
11
31
1.45
36405--36505
11
9.2
11
76
20
59
68
0
1
28
1.07
36431--36486
19
2.9
19
76
10
53
76
0
3
19
0.93
38495--38787
110
2.6
110
86
4
390
24
17
21
36
1.95
39904--39953
10
4.9
10
83
11
66
0
14
0
86
0.58
50040--50133
19
4.8
18
74
13
62
64
1
2
31
1.12
50057--50119
20
2.8
23
71
28
64
71
0
1
26
0.95
50056--50108
20
2.7
19
88
8
72
73
0
1
24
0.93
69141--69167
3
9.0
3
100
0
54
0
33
0
66
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
75966--75992
2
13.5
2
100
0
54
48
0
0
51
1.00
77402--77441
20
2.1
19
85
4
53
5
35
7
52
1.51
80043--80070
2
14.0
2
100
0
56
50
50
0
0
1.00
80077--80149
12
5.8
13
93
1
80
42
0
6
50
1.29
80070--80136
2
33.0
2
93
3
116
47
0
2
49
1.16
84014--84119
45
2.3
47
90
6
162
30
9
20
39
1.84
93752--93907
8
19.6
8
76
15
96
75
0
15
8
1.03
93744--93818
7
10.4
7
87
9
91
73
0
14
12
1.10
93827--93911
7
12.0
7
71
14
59
81
0
14
4
0.85
93833--93916
14
5.6
14
74
13
69
80
0
13
5
0.87
95241--95844
55
11.0
55
92
3
925
27
15
25
31
1.96
102846--102885
21
1.9
21
89
0
62
15
30
22
32
1.94

Tables:   1

The End!