genome.fa.s30.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000030.1 Hibiscus syriacus cultivar Beakdansim tig00000050_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118436

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2794--2904	58	1.9	57	82	8	136	45	17	9	27	1.79
12556--12605	16	3.1	17	82	5	59	52	2	0	46	1.12
13071--13191	60	2.0	60	81	0	143	38	15	8	38	1.78
14234--14292	31	1.9	31	82	6	75	27	1	6	64	1.28
15835--15888	21	2.6	21	100	0	108	48	16	16	18	1.82
20563--20604	19	2.3	19	87	4	59	19	28	35	16	1.93
27946--28076	65	2.0	65	100	0	262	24	22	9	43	1.82
34415--34449	13	2.8	12	87	8	52	60	8	0	31	1.27
35751--35802	20	2.5	20	75	15	52	51	3	0	44	1.19
37625--37700	35	2.2	35	85	0	98	42	13	0	44	1.43
38386--38436	21	2.4	21	100	0	102	50	21	11	15	1.76
39381--39425	20	2.2	20	84	8	54	31	15	22	31	1.95
39970--40053	32	2.8	30	81	5	89	41	5	21	30	1.77
41543--41858	150	2.1	150	94	1	555	26	17	21	34	1.95
41826--41870	23	2.0	23	86	0	63	20	26	26	26	1.99
47922--47964	21	2.0	21	81	0	50	30	30	25	13	1.94
48506--48821	150	2.1	150	93	1	546	26	17	21	34	1.95
48789--48833	23	2.0	23	86	0	63	20	26	26	26	1.99
52224--52276	22	2.5	22	87	6	74	35	16	16	30	1.92
54766--54840	35	2.1	35	82	0	96	45	0	13	41	1.43
56797--56946	80	1.9	80	84	5	205	42	5	14	38	1.68
70363--70425	23	2.7	23	80	5	63	46	1	1	50	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70481--70556	22	3.4	21	75	13	73	48	1	1	48	1.18
70520--70573	15	3.7	15	72	16	51	57	0	0	42	0.98
70732--70851	42	2.9	42	92	0	186	45	17	18	18	1.85
71747--71802	22	2.5	22	97	0	103	19	17	26	35	1.94
72406--72432	6	4.5	6	100	0	54	0	14	51	33	1.43
72429--72477	6	8.2	6	83	0	62	32	2	30	34	1.69
72406--72460	18	3.1	18	78	0	56	14	9	43	32	1.77
74569--74666	18	5.6	17	70	14	58	18	9	3	69	1.29
75651--75684	10	3.4	10	87	0	50	20	5	0	73	1.04
85076--85186	56	1.9	58	83	7	147	52	12	22	12	1.73
85923--86803	105	8.4	105	95	1	1536	33	25	18	22	1.97
88645--88742	18	5.6	17	70	14	58	18	9	3	69	1.29
93779--93803	12	2.1	12	100	0	50	32	0	0	68	0.90
100226--100350	64	2.0	64	93	0	214	34	22	11	32	1.89
100562--100683	43	2.8	43	87	4	158	31	29	16	22	1.95
100834--100923	37	2.5	37	88	1	128	25	23	15	35	1.94
101020--101417	129	3.1	126	83	6	444	24	31	18	25	1.98
101568--101628	3	20.3	3	86	0	86	32	6	0	60	1.22
102498--102616	30	3.9	30	78	7	116	21	10	8	59	1.57
103158--103188	8	3.9	8	100	0	62	38	38	12	9	1.77
105540--105589	25	2.0	25	92	0	82	24	10	30	36	1.88
107216--107260	13	3.5	13	81	0	54	68	13	2	15	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107754--107793	18	2.2	18	100	0	80	30	10	30	30	1.90
108916--109018	20	5.1	20	79	13	111	20	35	28	15	1.93
108942--109018	40	1.9	39	92	2	127	19	36	28	15	1.92
111761--111802	20	2.1	20	91	8	68	19	38	30	11	1.88

Tables:   1

The End!