genome.fa.s3000.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003000.1 Hibiscus syriacus cultivar Beakdansim tig00006208_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  183846

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2850--2904	24	2.3	25	81	6	60	29	21	16	32	1.95
4182--4207	5	5.2	5	100	0	52	0	19	0	80	0.71
8327--8359	16	2.1	16	100	0	66	42	6	18	33	1.75
11661--11700	12	3.3	12	82	10	55	17	15	0	67	1.23
11654--11699	23	2.0	22	88	12	67	19	13	0	67	1.23
11979--12008	12	2.5	12	100	0	60	70	0	6	23	1.11
16638--16665	12	2.3	12	100	0	56	71	0	7	21	1.09
20637--20691	24	2.3	25	81	6	60	29	21	16	32	1.95
22855--22922	26	2.6	26	90	0	109	30	17	32	19	1.95
29148--29178	16	1.9	16	93	0	53	48	6	19	25	1.72
31269--31324	13	4.7	11	74	21	51	0	19	1	78	0.84
31269--31324	18	3.1	18	82	17	71	0	19	1	78	0.84
32752--32782	16	1.9	16	93	0	53	48	6	19	25	1.72
36370--36421	25	2.1	25	82	13	63	40	7	13	38	1.73
39041--39077	17	2.3	16	86	13	58	67	2	18	10	1.32
39045--39077	17	2.0	17	94	5	59	66	3	18	12	1.36
42971--43013	23	1.9	21	81	13	50	34	13	18	32	1.90
44224--44281	23	2.5	24	85	2	82	8	17	10	63	1.49
49263--49314	21	2.6	21	90	6	81	32	13	7	46	1.72
53490--53536	23	2.0	24	83	4	60	68	12	14	4	1.36
57674--57747	2	37.0	2	100	0	148	50	0	0	50	1.00
59384--59421	13	2.9	13	88	0	58	78	0	21	0	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64366--64548	91	2.0	91	90	0	285	20	27	21	30	1.98
70298--70378	30	2.7	30	96	0	144	28	17	32	22	1.96
75136--75525	195	2.0	195	99	0	771	32	19	17	30	1.95
75766--75800	13	2.8	13	91	8	56	40	0	34	25	1.56
78344--78398	21	2.7	21	77	2	58	63	10	16	9	1.51
79536--79586	19	2.6	20	90	3	77	43	5	15	35	1.71
83694--83735	19	2.2	19	95	0	75	45	4	14	35	1.66
89688--89730	14	3.1	15	90	9	65	39	0	39	20	1.53
92453--92494	22	1.9	22	85	9	59	40	19	0	40	1.51
93533--93710	96	1.9	96	100	0	356	42	13	23	20	1.87
93533--93750	96	2.3	95	89	3	271	40	14	23	21	1.90
93227--93899	361	1.9	359	95	1	1231	41	16	19	23	1.90
94993--95021	15	2.0	15	93	6	51	0	20	3	75	0.94
95016--95073	28	2.1	27	83	3	71	8	15	15	60	1.58
95854--96027	91	1.9	91	89	0	267	29	23	25	21	1.99
99499--99550	21	2.6	21	90	6	81	32	13	7	46	1.72
103626--103674	19	2.5	19	84	15	64	34	12	10	42	1.76
103637--103678	21	2.0	21	90	4	68	40	9	9	40	1.70
105263--105291	15	2.0	15	93	6	51	0	20	3	75	0.94
105286--105343	28	2.1	27	83	3	71	8	15	15	60	1.58
116535--116581	13	3.2	16	80	17	57	17	19	0	63	1.30
116556--116584	13	2.3	13	94	5	51	13	17	0	68	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119997--120037	14	3.0	14	89	3	57	21	41	0	36	1.54
120000--120039	13	3.0	13	88	3	53	22	42	0	35	1.54
123448--123498	20	2.6	20	90	3	77	35	15	5	43	1.71
123914--123951	20	1.9	20	84	10	51	18	21	0	60	1.36
124244--124270	5	5.4	5	100	0	54	81	0	18	0	0.69
127633--127683	20	2.6	20	90	3	77	35	15	5	43	1.71
128099--128136	20	1.9	20	84	10	51	18	21	0	60	1.36
130941--131005	26	2.5	26	89	0	94	26	18	35	20	1.95
132720--132762	23	1.9	21	81	13	50	34	13	18	32	1.90
135251--135302	19	2.6	21	90	6	81	46	5	13	34	1.67
136211--136270	30	2.0	31	83	3	77	55	10	8	26	1.61
138650--138699	11	4.8	10	80	20	50	2	18	2	78	0.95
138650--138702	10	5.1	10	79	4	52	1	16	1	79	0.92
139423--139473	20	2.6	20	93	3	86	47	5	13	33	1.67
140382--140441	30	2.0	31	83	3	77	55	10	8	26	1.61
144780--144849	35	1.9	37	88	5	108	34	34	4	27	1.76
144785--144893	33	3.2	33	80	8	96	32	35	1	30	1.68
148678--148786	33	3.2	33	80	8	96	32	35	1	30	1.68
152709--152761	27	1.9	28	84	3	72	13	15	13	58	1.64
153583--153647	26	2.5	26	97	0	121	29	20	33	16	1.95
154897--154946	21	2.3	21	89	6	73	82	2	14	2	0.86
154906--154947	9	4.6	9	82	11	50	83	2	14	0	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
157408--157455	25	2.0	24	83	4	60	39	6	27	27	1.80
158743--158794	21	2.6	21	90	6	81	34	13	5	46	1.67
159679--159784	2	53.0	2	100	0	212	50	0	0	50	1.00
160021--160080	30	2.0	31	83	3	77	26	8	10	55	1.61
160989--161040	21	2.6	21	90	6	81	34	13	5	46	1.67
161466--161509	20	2.2	20	84	8	54	20	15	0	63	1.31
161772--161821	14	3.9	13	73	21	52	78	2	20	0	0.86
161766--161821	19	3.1	18	82	17	71	78	1	19	0	0.84
161766--161821	11	4.7	11	74	21	51	78	1	19	0	0.84
164198--164257	30	2.0	31	83	3	77	26	8	10	55	1.61
165165--165216	21	2.6	21	90	6	81	34	13	5	46	1.67
165836--165911	2	38.5	2	94	2	136	48	1	0	50	1.09
175318--175498	91	2.0	90	81	6	213	20	28	22	28	1.99
179089--179153	13	5.4	12	75	21	57	29	3	35	32	1.73
179071--179162	36	2.6	35	94	1	157	28	4	35	31	1.77
180869--180918	19	2.6	19	87	6	66	36	16	6	42	1.72

Tables:   1

The End!