genome.fa.s3001.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003001.1 Hibiscus syriacus cultivar Beakdansim tig00006211_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  149400

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
767--889	41	3.0	41	96	2	221	30	17	12	39	1.86
1835--2486	331	2.0	320	90	4	1011	33	17	20	28	1.95
7921--7976	21	2.6	22	78	13	64	50	0	3	46	1.19
9976--10047	32	2.3	30	81	9	81	52	2	8	36	1.46
14167--14321	39	4.0	39	77	3	159	20	27	21	29	1.98
19837--19993	39	4.0	39	83	0	206	17	28	24	29	1.97
19837--19993	78	2.0	78	88	0	233	17	28	24	29	1.97
24029--24098	27	2.6	27	86	0	86	47	20	10	22	1.79
30642--30667	2	13.0	2	100	0	52	50	0	0	50	1.00
30564--30754	100	1.9	99	90	3	303	45	5	1	48	1.32
31358--31387	14	2.1	14	93	0	51	33	0	0	66	0.92
31407--31455	22	2.2	22	85	7	64	46	0	2	51	1.12
31407--31460	23	2.3	22	81	9	63	48	0	3	48	1.19
32489--32854	131	2.8	130	84	3	450	39	18	11	29	1.86
38319--38380	31	2.1	31	84	6	83	56	1	1	40	1.19
38354--38414	25	2.4	25	80	5	68	59	0	3	37	1.14
38366--38438	25	3.0	25	76	9	78	57	0	4	38	1.18
38374--38453	22	3.3	25	77	20	82	56	0	3	40	1.17
38386--38453	19	3.0	21	76	23	68	54	0	4	41	1.20
41059--41129	31	2.3	31	85	4	90	50	9	4	35	1.55
43328--43392	34	1.9	34	96	0	121	46	20	7	26	1.77
48185--48239	25	2.2	25	100	0	110	72	3	3	20	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48303--48333	16	1.9	16	100	0	62	38	0	16	45	1.47
48700--48741	6	7.2	6	86	2	59	35	16	19	28	1.93
48831--48899	15	4.3	17	78	10	74	18	27	31	21	1.97
48843--48899	15	3.7	15	81	9	78	17	28	33	21	1.96
48831--48899	32	2.2	32	97	0	129	18	27	31	21	1.97
50898--50964	22	3.1	22	91	2	109	26	26	23	22	2.00
52512--52552	2	20.5	2	100	0	82	51	0	0	48	1.00
53165--53200	18	2.0	18	100	0	72	11	22	22	44	1.84
53303--53335	16	2.1	15	94	5	57	33	6	21	39	1.78
55380--55404	2	12.5	2	100	0	50	48	0	0	52	1.00
56178--56661	165	3.0	158	85	6	639	25	14	21	38	1.91
56502--56866	199	1.8	199	84	3	493	23	15	21	39	1.92
60636--60739	39	2.7	39	96	0	190	25	23	21	29	1.99
65065--65507	223	2.0	224	92	4	752	44	8	7	39	1.63
65572--65617	20	2.3	19	89	10	74	54	10	17	17	1.70
65738--65784	20	2.4	19	79	10	58	55	8	17	19	1.67
68101--68166	33	2.0	33	87	0	96	28	1	45	24	1.62
69954--69997	19	2.4	19	92	3	72	31	2	9	56	1.43
70079--72500	199	12.1	200	98	0	4580	37	15	15	32	1.88
70079--72500	399	6.1	400	98	1	4555	37	15	15	32	1.88
70079--72500	598	4.0	598	98	0	4597	37	15	15	32	1.88
73958--74040	21	4.4	18	67	22	55	34	9	34	20	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73958--74055	6	16.3	6	78	0	61	35	8	34	21	1.83
73973--74059	3	29.0	3	75	0	75	34	6	34	24	1.82
73961--74051	42	2.2	42	90	4	139	34	8	35	21	1.85
75527--76377	183	4.7	184	95	1	1516	35	14	15	34	1.88
75527--76377	367	2.3	364	95	1	1508	35	14	15	34	1.88
78933--78994	22	2.7	23	87	5	81	35	6	19	38	1.77
78933--79009	23	3.5	22	82	10	77	35	5	19	40	1.74
79150--79215	29	2.2	30	82	12	75	51	4	0	43	1.22
79360--79424	23	2.8	23	90	0	94	35	7	18	38	1.80
79628--79664	18	2.1	18	89	0	56	32	5	10	51	1.60
79620--79666	24	2.0	24	86	0	67	34	4	14	46	1.64
83119--84365	412	3.0	414	94	1	2160	35	12	20	31	1.90
88133--88209	35	2.2	36	97	2	147	37	2	6	53	1.41
97902--97932	3	10.3	3	100	0	62	67	32	0	0	0.91
98109--98139	13	2.3	14	94	5	55	12	25	22	38	1.90
98889--98920	15	2.1	15	94	0	55	59	0	6	34	1.23
101413--101589	97	1.8	96	81	3	221	27	27	12	32	1.93
106901--106956	20	2.8	20	94	0	103	33	17	23	25	1.96
109129--109215	23	3.8	23	89	0	138	29	25	25	19	1.98
109223--109551	103	3.2	103	93	0	577	35	23	13	26	1.93
116729--116827	49	2.0	50	98	2	191	42	16	20	21	1.89
122984--123044	32	1.9	32	89	0	95	52	11	14	21	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124920--124947	3	9.3	3	100	0	56	32	0	0	67	0.91
125928--126369	21	21.2	21	74	12	276	21	19	23	36	1.95
125953--126289	42	8.1	40	83	8	331	21	18	23	36	1.95
125934--126356	63	6.8	62	81	10	463	21	18	22	36	1.95
126413--126459	21	2.2	21	96	0	85	44	17	17	21	1.86
129229--129304	35	2.2	35	90	0	116	40	19	1	38	1.60
129702--129948	130	1.9	130	94	2	435	36	14	12	36	1.85
129716--129979	130	2.0	128	82	6	318	39	13	13	34	1.83
130411--130447	15	2.4	16	86	13	51	59	5	2	32	1.34
148520--148634	21	5.5	21	89	4	169	20	26	33	20	1.96
148528--148658	42	3.1	42	82	8	117	21	22	35	21	1.96
148638--148685	21	2.3	21	85	0	60	22	12	39	25	1.89

Tables:   1

The End!