Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003002.1 Hibiscus syriacus cultivar Beakdansim tig00006213_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 268949
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Found at i:3436 original size:21 final size:20
Alignment explanation
Indices: 3403--3441 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
3393 GAAAAAAATA
*
3403 TGTTCTCAATGTGGAGAACT
1 TGTTCTCAATGTGAAGAACT
*
3423 TGTTCGTCGATGTGAAGAA
1 TGTTC-TCAATGTGAAGAA
3442 TTGATATTGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (20 bp):
TGTTCTCAATGTGAAGAACT
Found at i:4420 original size:3 final size:3
Alignment explanation
Indices: 4412--4453 Score: 54
Period size: 3 Copynumber: 14.7 Consensus size: 3
4402 GACCTGTCTG
4412 TTA TTA TTA TTA TTA TTA TTA TATA TTA -TA TT- TTA TT- TTA TT
1 TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TT
4454 GTAGGCTAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
2 6 0.17
3 26 0.74
4 3 0.09
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:6768 original size:129 final size:130
Alignment explanation
Indices: 6470--6832 Score: 424
Period size: 129 Copynumber: 2.8 Consensus size: 130
6460 ATCGATATTG
* * * *
6470 AGAATAATAATATCTTTTCATTTCGGTTGGAGTAAT-AATGAATGCTTTAAGGCATGAGATGTCA
1 AGAATAATGATATCTTTTCATTTCGATTGGAGTAATAAATGAATGCTTTAAGGTATGAGAGGTCA
* * * * *
6534 TTTATTCTCGATTGGAAATAATTTGATATTACCGTTTTCTCTCGAATTAATATTGATTTTTAAGA
66 TTTATTCTCGATTGGAAATAATTAGATA-TACCATTTTCACTCGAATCAATATTGAATTTTAAGA
*
6599 T
130 C
* * * * ** * * *
6600 GGCATACTGATATCTCTTCATTTCGATTGGAACAGTAAATGACTACTTTAAGGTATGAGAGGTCA
1 AGAATAATGATATCTTTTCATTTCGATTGGAGTAATAAATGAATGCTTTAAGGTATGAGAGGTCA
* * * * *
6665 TTTATTCTCAATTGGAAATTATTAGATA-ATCATTTTCACTCGGATCGATATTGAATTTTAAGAC
66 TTTATTCTCGATTGGAAATAATTAGATATACCATTTTCACTCGAATCAATATTGAATTTTAAGAC
* * * **
6729 AGAATAATGATATCTTTTCATTTCGATTAGAGTAATAAATGATTGTTTTAAGGTATGAGAGGTTG
1 AGAATAATGATATCTTTTCATTTCGATTGGAGTAATAAATGAATGCTTTAAGGTATGAGAGGTCA
*
6794 TTTATTCTCGATTGGAAATAATTAGATATTACTATTTTC
66 TTTATTCTCGATTGGAAATAATTAGATA-TACCATTTTC
6833 TCTTTTGAAA
Statistics
Matches: 189, Mismatches: 41, Indels: 5
0.80 0.17 0.02
Matches are distributed among these distances:
129 106 0.56
130 27 0.14
131 56 0.30
ACGTcount: A:0.32, C:0.10, G:0.17, T:0.41
Consensus pattern (130 bp):
AGAATAATGATATCTTTTCATTTCGATTGGAGTAATAAATGAATGCTTTAAGGTATGAGAGGTCA
TTTATTCTCGATTGGAAATAATTAGATATACCATTTTCACTCGAATCAATATTGAATTTTAAGAC
Found at i:9023 original size:15 final size:15
Alignment explanation
Indices: 9003--9034 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
8993 GTTCAACAGA
9003 GACGATGAGTTTTAT
1 GACGATGAGTTTTAT
9018 GACGATGAGTTTTAT
1 GACGATGAGTTTTAT
9033 GA
1 GA
9035 AGGTTACTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.28, C:0.06, G:0.28, T:0.38
Consensus pattern (15 bp):
GACGATGAGTTTTAT
Found at i:10461 original size:339 final size:347
Alignment explanation
Indices: 9595--12644 Score: 4106
Period size: 339 Copynumber: 8.9 Consensus size: 347
9585 TGAATAAAAT
* * *
9595 CAAATTCCTATTCTCTATTATCCAAAGAAAGTTGGTAAGTTTTAATAACATATAGTAATGGATAA
1 CAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAA
* * *
9660 AAC-TTT-ATACAAATTTAAGTTTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAG
66 ATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAG
* * * * *
9723 ATGGTCAGGAAAAGGAGTATGCAGGAAAAGAATCTGTTATAAACCAAATTCCTATTATGTATTAT
131 ATGGTCAGGAAACGGAGAATGCAAGAAAAGAATCTGTTATAAACCAAATTCCTATT-TTTACTAT
* * * *
9788 CCAAAGAAAGTTGCTAAGTTTCAATAACATGTACTAATGGATAAATCTTTTG-TACCAAAATTAA
195 CCGAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAAATCTTTTGTTA-CAAATTTAA
* * * * *
9852 ATTTTGACCGGTTTATAATACTTTTATTTTTCTCTCTTGAAAAAAGATGGTCAGGAAACGGAGAA
259 ATTTGGATCGGTCTATAATTCTTTTA-TTTTCTCTCTTGAAAAAAGATGGTCAGGAAACAGAGAA
* * *
9917 TGCATGAAAAGAATATGTTAAAAAC
323 TGCAGGAAAAGAATCTGTTATAAAC
* *
9942 CAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACAAGTACTAATGGATAA
1 CAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAA
* * *
10007 ATCTTTTGTTACAAATTTAAATTTTGATCGGTTTATAATT-ATTTATTTTCTCTCTTG-AAAAAG
66 ATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAG
10070 ATGGTCAGGAAACGGAGAATGCAAGAAAAGAATCTGTTATAAACCAAATTCCTATTTTCTACTAT
131 ATGGTCAGGAAACGGAGAATGCAAGAAAAGAATCTGTTATAAACCAAATTCCTATTTT-TACTAT
* *
10135 CCGAAGAGAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAAATCTTTTGTTAC-AAGTTAAA
195 CCGAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAAATCTTTTGTTACAAATTTAAA
** * * *
10199 TTTGCTTCGGTCTATAATTC-TTT-TTTT-TCTCTTG-AAAAAGATTGTCAGGAAACGGAGTATG
260 TTTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAGATGGTCAGGAAACAGAGAATG
* *
10260 CAGGAAAAGAATATGTCATAAAC
325 CAGGAAAAGAATCTGTTATAAAC
* * *
10283 CAAATTCCTATTCT-TACTATCCAAAGAAAGTTGGTTAGTTTGAGTAACATGTAGTAATGGATAA
1 CAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAA
* *
10347 ATCTTTTGTTAC-AATTTAAATTTGGATCGGTCTAAAATTC-TTTATTTTCTCTTTTGAAAAAAG
66 ATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAG
* * * *
10410 ATGGTCAGGAAA-AGAGAATGCATGAAAATAATCTGTTATAAACCAAATTCCTATTCTCTACTAT
131 ATGGTCAGGAAACGGAGAATGCAAGAAAAGAATCTGTTATAAACCAAATTCCTATT-TTTACTAT
* * * *
10474 CCAAAGAAAGTTGGTAAGTTTCAATAACATGTACTAATGGATAAATATTTTGTTACAAATTTGAA
195 CCGAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAAATCTTTTGTTACAAATTTAAA
* *
10539 TTTTGATCGGT-TATAATTCTTTTA-TTT-TCTCTTGAAAAAAGATGATCAGG-AACAGAGAATG
260 TTTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAGATGGTCAGGAAACAGAGAATG
*
10600 CATGAAAAGAATCTGTTATAAAC
325 CAGGAAAAGAATCTGTTATAAAC
* * * *
10623 CAAA---ATATTTTCTACTATCCGAAGAAAGTTGGTACGTTTCAATAACATGTAGTAATGGATAA
1 CAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAA
* * *
10685 ATCTTTTGTTACAAATTTGAATTTTGATCGGTTTATAATTCTTTTATTTTCTCTCTTGAAAAAAG
66 ATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAG
* *
10750 ATGGTCAGGAAACGGAGAATGCAAGAAAAGAATCTGTTACAAACCAAATTCCTA-TTTTACTGTC
131 ATGGTCAGGAAACGGAGAATGCAAGAAAAGAATCTGTTATAAACCAAATTCCTATTTTTACTATC
10814 CGAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAAATCTTTTGTTACAAATTTAAAT
196 CGAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAAATCTTTTGTTACAAATTTAAAT
* * *
10879 TTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAGATGGTTAGGAAACGGAGTATGC
261 TTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAGATGGTCAGGAAACAGAGAATGC
10944 AGGAAAAGAATCTGTTATAAAC
326 AGGAAAAGAATCTGTTATAAAC
* * * * *
10966 CAAATTCATATTCTCTACTATCAAAAGAAAGATGGTAAGTTTCAATAACAAGTACTAATGGATAA
1 CAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAA
* * *
11031 ATCTTTTGTTACAAATTTAAATTTGGTTCAGTCTATAATTCTTTTATTTTTTTCTCTTG-AAAAA
66 ATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTA-TTTTCTCTCTTGAAAAAA
* * *
11095 GATGGTCAGGAAACGGAGTATGC-AGGAAAGAATCTGTTATAAACCAAATTCCTATTATTACTAT
130 GATGGTCAGGAAACGGAGAATGCAAGAAAAGAATCTGTTATAAACCAAATTCCTATTTTTACTAT
* * * * * *
11159 CCAAAGAAAGTTGGTAAG-TTGAGTAACATGTAGTAATGGATAAAT-ATTTGTTGCAATTTTAAA
195 CCGAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAAATCTTTTGTTACAAATTTAAA
* * * *
11222 TTTGGATCGGTCTAAAATTC-TTT-TTTTCTCT-TTCAAAAAAGATGGTAAGTAAA-AGGAGAAT
260 TTTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAGATGGTCAGGAAACA-GAGAAT
*
11283 GCATGAAAAGAATCTGTTAT-AAC
324 GCAGGAAAAGAATCTGTTATAAAC
*
11306 CAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACA-GTACTAATGGATAA
1 CAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAA
* * * * *
11370 ATCTTTTGTTACAAATTTGAATTTTGATCAGTTTATAATTCTTTTATTTTCTCTCTTGAAAAATG
66 ATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAG
* * * * **
11435 ATGGTTAGG-AACAGAGAATGCAGGAAAAGATTCTGTTATAAACCAAATTAATA-TTTTACTATC
131 ATGGTCAGGAAACGGAGAATGCAAGAAAAGAATCTGTTATAAACCAAATTCCTATTTTTACTATC
* * * *
11498 CGAAGAAAG--GGTACGTTTCAATAACATGTAGTAGTGGGTAAATCTTTTGTTACAAATTTGAAT
196 CGAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAAATCTTTTGTTACAAATTTAAAT
** * * *
11561 TTTAATTGGTTTATAATTCTTTTATTTTCTCTTCTTTTATTTTCTCTCTTGAAAAAAGATGGTTA
261 TTGGATCGGTCTAT-A-------A-------TTCTTTTATTTTCTCTCTTGAAAAAAGATGGTCA
*
11626 GGAAATAGAGAATGCAGGAAAAGAATCTGTTATAAAC
311 GGAAACAGAGAATGCAGGAAAAGAATCTGTTATAAAC
** * * * *
11663 CAAATTCAAATTTTCTACTATCC-AATAAAGTTGGTAAGTTTGAATAACA--TAG---TGAATAA
1 CAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAA
11722 ATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTG-AAAAAG
66 ATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAG
* * *
11786 ATGGTCAGGAAACGGAGAATGCATGAAAAGAA--TGATCTAAACCAAATTCCTATTTTCTACTAT
131 ATGGTCAGGAAACGGAGAATGCAAGAAAAGAATCTGTTATAAACCAAATTCCTATTTT-TACTAT
11849 CCGAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAAATCTTTTGTTACAAATTTAAA
195 CCGAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAAATCTTTTGTTACAAATTTAAA
* * *
11914 TTTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAATATGGTCAGGAAACAAAGATTG
260 TTTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAGATGGTCAGGAAACAGAGAATG
*
11979 CAAGAAAAGAATCTGTTATAAAC
325 CAGGAAAAGAATCTGTTATAAAC
* * * *
12002 C-AATTCCTATTATCTACTATCCAAA-TAA----GTAAGTTTCAATAGCATGTACTAATGGATAA
1 CAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAA
* *
12061 ATCTTTTGCTACAAATTTAAATTTTGATCGGT-T-TAATTCTTTTATTTTCTCTCTTG-AAAAAG
66 ATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAG
* *
12123 ATGGTCAGGAAACGGAGAATGCAAGAAAAGAATATGTTAT-AACCAAATTCCTA-TTTTACTGTC
131 ATGGTCAGGAAACGGAGAATGCAAGAAAAGAATCTGTTATAAACCAAATTCCTATTTTTACTATC
12186 CGAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAAATCTTTTGTTACAAATTTAAAT
196 CGAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAAATCTTTTGTTACAAATTTAAAT
* * *
12251 TTGGACCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAGATGGTCAGAAAACAGAGAATGG
261 TTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAGATGGTCAGGAAACAGAGAATGC
* *
12316 TGGAAAAGAATATGTTATAAAC
326 AGGAAAAGAATCTGTTATAAAC
* * *
12338 CAAATTCCTATTCTATACTATCCAAAGAAAGTTGGTAAGTTTGAGTAACATGTAGTAATGGATAA
1 CAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAA
*
12403 ATCTTTTGTTACAAATTTAAATTTGGATCGGTCTAAAATTCTTTTATTTTCTCTCTTGAAAAAAG
66 ATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAG
* ** * * * * * *
12468 ATGGTCAGGAAACAGAGAAAACATGAAAAGAATATGTTATAAACCGAATTCTTATTCTCTACTGT
131 ATGGTCAGGAAACGGAGAATGCAAGAAAAGAATCTGTTATAAACCAAATTCCTATT-TTTACTAT
* * *
12533 CCAAAGAAAGTGGGTAAGTTTCAATAACATGTACTAATGGATAAATCTTTTGTTACAAATTTAAA
195 CCGAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAAATCTTTTGTTACAAATTTAAA
* * *
12598 TTTTGATCGGTTTATATTTCTTTTATTTTCTCTCTTGAAAAAAGATG
260 TTTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAGATG
12645 ATAAGAAATT
Statistics
Matches: 2391, Mismatches: 238, Indels: 147
0.86 0.09 0.05
Matches are distributed among these distances:
334 14 0.01
336 157 0.07
337 113 0.05
338 155 0.06
339 450 0.19
340 234 0.10
341 155 0.06
342 93 0.04
343 43 0.02
344 56 0.02
345 99 0.04
346 178 0.07
347 187 0.08
348 133 0.06
349 28 0.01
350 16 0.01
351 16 0.01
352 95 0.04
353 4 0.00
354 63 0.03
355 10 0.00
356 68 0.03
357 24 0.01
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.36
Consensus pattern (347 bp):
CAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAA
ATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAG
ATGGTCAGGAAACGGAGAATGCAAGAAAAGAATCTGTTATAAACCAAATTCCTATTTTTACTATC
CGAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAAATCTTTTGTTACAAATTTAAAT
TTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAGATGGTCAGGAAACAGAGAATGC
AGGAAAAGAATCTGTTATAAAC
Found at i:11108 original size:174 final size:174
Alignment explanation
Indices: 9595--12644 Score: 4103
Period size: 172 Copynumber: 17.8 Consensus size: 174
9585 TGAATAAAAT
* * *
9595 CAAATTCCTATTCTCTATTATCCAAAGAAAGTTGGTAAGTTTTAATAACATATAGTAATGGATAA
1 CAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAA
* * *
9660 AAC-TTT-ATACAAATTTAAGTTTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAG
66 ATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAG
* *
9723 ATGGTCAGGAAAAGGAGTATGCAGGAAAAGAATCTGTTATAAAC
131 ATGGTCAGGAAACGGAGAATGCAGGAAAAGAATCTGTTATAAAC
* * * * *
9767 CAAATTCCTATTATGTATTATCCAAAGAAAGTTGCTAAGTTTCAATAACATGTACTAATGGATAA
1 CAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAA
* * * * *
9832 ATCTTTTG-TACCAAAATTAAATTTTGACCGGTTTATAATACTTTTATTTTTCTCTCTTGAAAAA
66 ATCTTTTGTTA-CAAATTTAAATTTGGATCGGTCTATAATTCTTTTA-TTTTCTCTCTTGAAAAA
* * *
9896 AGATGGTCAGGAAACGGAGAATGCATGAAAAGAATATGTTAAAAAC
129 AGATGGTCAGGAAACGGAGAATGCAGGAAAAGAATCTGTTATAAAC
* *
9942 CAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACAAGTACTAATGGATAA
1 CAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAA
* * *
10007 ATCTTTTGTTACAAATTTAAATTTTGATCGGTTTATAATT-ATTTATTTTCTCTCTTG-AAAAAG
66 ATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAG
*
10070 ATGGTCAGGAAACGGAGAATGCAAGAAAAGAATCTGTTATAAAC
131 ATGGTCAGGAAACGGAGAATGCAGGAAAAGAATCTGTTATAAAC
* * *
10114 CAAATTCCTATTTTCTACTATCCGAAGAGAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAA
1 CAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAA
* **
10179 ATCTTTTGTTAC-AAGTTAAATTTGCTTCGGTCTATAATTC-TTT-TTTT-TCTCTTG-AAAAAG
66 ATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAG
* * * *
10239 ATTGTCAGGAAACGGAGTATGCAGGAAAAGAATATGTCATAAAC
131 ATGGTCAGGAAACGGAGAATGCAGGAAAAGAATCTGTTATAAAC
* * *
10283 CAAATTCCTATTCT-TACTATCCAAAGAAAGTTGGTTAGTTTGAGTAACATGTAGTAATGGATAA
1 CAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAA
* *
10347 ATCTTTTGTTAC-AATTTAAATTTGGATCGGTCTAAAATTC-TTTATTTTCTCTTTTGAAAAAAG
66 ATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAG
* * *
10410 ATGGTCAGGAAA-AGAGAATGCATGAAAATAATCTGTTATAAAC
131 ATGGTCAGGAAACGGAGAATGCAGGAAAAGAATCTGTTATAAAC
*
10453 CAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTACTAATGGATAA
1 CAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAA
* * *
10518 ATATTTTGTTACAAATTTGAATTTTGATCGGT-TATAATTCTTTTA-TTT-TCTCTTGAAAAAAG
66 ATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAG
* * *
10580 ATGATCAGG-AACAGAGAATGCATGAAAAGAATCTGTTATAAAC
131 ATGGTCAGGAAACGGAGAATGCAGGAAAAGAATCTGTTATAAAC
* * * *
10623 CAAA---ATATTTTCTACTATCCGAAGAAAGTTGGTACGTTTCAATAACATGTAGTAATGGATAA
1 CAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAA
* * *
10685 ATCTTTTGTTACAAATTTGAATTTTGATCGGTTTATAATTCTTTTATTTTCTCTCTTGAAAAAAG
66 ATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAG
* *
10750 ATGGTCAGGAAACGGAGAATGCAAGAAAAGAATCTGTTACAAAC
131 ATGGTCAGGAAACGGAGAATGCAGGAAAAGAATCTGTTATAAAC
* *
10794 CAAATTCCTATT-T-TACTGTCCGAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAA
1 CAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAA
10857 ATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAG
66 ATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAG
* *
10922 ATGGTTAGGAAACGGAGTATGCAGGAAAAGAATCTGTTATAAAC
131 ATGGTCAGGAAACGGAGAATGCAGGAAAAGAATCTGTTATAAAC
* * * * *
10966 CAAATTCATATTCTCTACTATCAAAAGAAAGATGGTAAGTTTCAATAACAAGTACTAATGGATAA
1 CAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAA
* * *
11031 ATCTTTTGTTACAAATTTAAATTTGGTTCAGTCTATAATTCTTTTATTTTTTTCTCTTG-AAAAA
66 ATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTA-TTTTCTCTCTTGAAAAAA
*
11095 GATGGTCAGGAAACGGAGTATGCAGG-AAAGAATCTGTTATAAAC
130 GATGGTCAGGAAACGGAGAATGCAGGAAAAGAATCTGTTATAAAC
* * *
11139 CAAATTCCTATTAT-TACTATCCAAAGAAAGTTGGTAAG-TTGAGTAACATGTAGTAATGGATAA
1 CAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAA
* * * * *
11202 AT-ATTTGTTGCAATTTTAAATTTGGATCGGTCTAAAATTC-TTT-TTTTCTCT-TTCAAAAAAG
66 ATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAG
* * * *
11263 ATGGTAAGTAAAAGGAGAATGCATGAAAAGAATCTGTTAT-AAC
131 ATGGTCAGGAAACGGAGAATGCAGGAAAAGAATCTGTTATAAAC
*
11306 CAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACA-GTACTAATGGATAA
1 CAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAA
* * * * *
11370 ATCTTTTGTTACAAATTTGAATTTTGATCAGTTTATAATTCTTTTATTTTCTCTCTTGAAAAATG
66 ATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAG
* * *
11435 ATGGTTAGG-AACAGAGAATGCAGGAAAAGATTCTGTTATAAAC
131 ATGGTCAGGAAACGGAGAATGCAGGAAAAGAATCTGTTATAAAC
** * * * *
11478 CAAATTAATATT-T-TACTATCCGAAGAAAG--GGTACGTTTCAATAACATGTAGTAGTGGGTAA
1 CAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAA
* ** * *
11539 ATCTTTTGTTACAAATTTGAATTTTAATTGGTTTATAATTCTTTTATTTTCTCTTCTTTTATTTT
66 ATCTTTTGTTACAAATTTAAATTTGGATCGGTCTAT-A-------A-------TTCTTTTATTTT
* **
11604 CTCTCTTGAAAAAAGATGGTTAGGAAATAGAGAATGCAGGAAAAGAATCTGTTATAAAC
116 CTCTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAATCTGTTATAAAC
** * * * *
11663 CAAATTCAAATTTTCTACTATCC-AATAAAGTTGGTAAGTTTGAATAACA--TAG---TGAATAA
1 CAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAA
11722 ATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTG-AAAAAG
66 ATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAG
* * *
11786 ATGGTCAGGAAACGGAGAATGCATGAAAAGAA--TGATCTAAAC
131 ATGGTCAGGAAACGGAGAATGCAGGAAAAGAATCTGTTATAAAC
* *
11828 CAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAA
1 CAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAA
*
11893 ATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAT
66 ATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAG
** * *
11958 ATGGTCAGGAAACAAAGATTGCAAGAAAAGAATCTGTTATAAAC
131 ATGGTCAGGAAACGGAGAATGCAGGAAAAGAATCTGTTATAAAC
* * * *
12002 C-AATTCCTATTATCTACTATCCAAA-TAA----GTAAGTTTCAATAGCATGTACTAATGGATAA
1 CAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAA
* *
12061 ATCTTTTGCTACAAATTTAAATTTTGATCGGT-T-TAATTCTTTTATTTTCTCTCTTG-AAAAAG
66 ATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAG
* *
12123 ATGGTCAGGAAACGGAGAATGCAAGAAAAGAATATGTTAT-AAC
131 ATGGTCAGGAAACGGAGAATGCAGGAAAAGAATCTGTTATAAAC
* *
12166 CAAATTCCTATT-T-TACTGTCCGAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAA
1 CAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAA
*
12229 ATCTTTTGTTACAAATTTAAATTTGGACCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAG
66 ATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAG
* * ** *
12294 ATGGTCAGAAAACAGAGAATGGTGGAAAAGAATATGTTATAAAC
131 ATGGTCAGGAAACGGAGAATGCAGGAAAAGAATCTGTTATAAAC
* * *
12338 CAAATTCCTATTCTATACTATCCAAAGAAAGTTGGTAAGTTTGAGTAACATGTAGTAATGGATAA
1 CAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAA
*
12403 ATCTTTTGTTACAAATTTAAATTTGGATCGGTCTAAAATTCTTTTATTTTCTCTCTTGAAAAAAG
66 ATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAG
* ** * *
12468 ATGGTCAGGAAACAGAGAAAACATGAAAAGAATATGTTATAAAC
131 ATGGTCAGGAAACGGAGAATGCAGGAAAAGAATCTGTTATAAAC
* * * * *
12512 CGAATTCTTATTCTCTACTGTCCAAAGAAAGTGGGTAAGTTTCAATAACATGTACTAATGGATAA
1 CAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAA
* * *
12577 ATCTTTTGTTACAAATTTAAATTTTGATCGGTTTATATTTCTTTTATTTTCTCTCTTGAAAAAAG
66 ATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAG
12642 ATG
131 ATG
12645 ATAAGAAATT
Statistics
Matches: 2566, Mismatches: 238, Indels: 146
0.87 0.08 0.05
Matches are distributed among these distances:
163 9 0.00
164 7 0.00
165 80 0.03
166 49 0.02
167 168 0.07
168 306 0.12
169 160 0.06
170 200 0.08
171 307 0.12
172 462 0.18
173 72 0.03
174 432 0.17
175 164 0.06
176 2 0.00
177 1 0.00
182 1 0.00
183 36 0.01
184 35 0.01
185 42 0.02
186 10 0.00
187 8 0.00
188 15 0.01
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.36
Consensus pattern (174 bp):
CAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAATGGATAA
ATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTCTCTTGAAAAAAG
ATGGTCAGGAAACGGAGAATGCAGGAAAAGAATCTGTTATAAAC
Found at i:11597 original size:15 final size:15
Alignment explanation
Indices: 11577--11607 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
11567 TGGTTTATAA
11577 TTCTTTTATTTTCTC
1 TTCTTTTATTTTCTC
11592 TTCTTTTATTTTCTC
1 TTCTTTTATTTTCTC
11607 T
1 T
11608 CTTGAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.19, G:0.00, T:0.74
Consensus pattern (15 bp):
TTCTTTTATTTTCTC
Found at i:15609 original size:26 final size:25
Alignment explanation
Indices: 15546--15609 Score: 60
Period size: 26 Copynumber: 2.5 Consensus size: 25
15536 TAACAATAAG
*
15546 TAAATAAATATAACAATGGTTAAAA
1 TAAATAAATAAAACAATGGTTAAAA
* *
15571 TATAAGAAA-AAAACCAATGGTT-AAT
1 TA-AATAAATAAAA-CAATGGTTAAAA
15596 TCAAATAAATAAAA
1 T-AAATAAATAAAA
15610 GCATAATTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
25 13 0.42
26 18 0.58
ACGTcount: A:0.61, C:0.06, G:0.08, T:0.25
Consensus pattern (25 bp):
TAAATAAATAAAACAATGGTTAAAA
Found at i:17055 original size:22 final size:23
Alignment explanation
Indices: 17019--17071 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
17009 AATAAAATAA
*
17019 AAAGAAGAAAAT-AAAGAATATT
1 AAAGAAGAAAATAAAAGAAGATT
17041 AAAG-AGAAAAGTAAAAGAAGATT
1 AAAGAAGAAAA-TAAAAGAAGATT
17064 -AAGAAGAA
1 AAAGAAGAA
17072 GATTTAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
21 6 0.22
22 8 0.30
23 13 0.48
ACGTcount: A:0.68, C:0.00, G:0.19, T:0.13
Consensus pattern (23 bp):
AAAGAAGAAAATAAAAGAAGATT
Found at i:24892 original size:12 final size:11
Alignment explanation
Indices: 24859--24902 Score: 54
Period size: 11 Copynumber: 4.0 Consensus size: 11
24849 TTCCTCTATG
*
24859 TTTTTATTGT-
1 TTTTTATTTTA
24869 TTTTTATTTTA
1 TTTTTATTTTA
24880 TTTTTATTATTA
1 TTTTTATT-TTA
*
24892 TTGTTATTTTA
1 TTTTTATTTTA
24903 GTATTTTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
10 9 0.30
11 11 0.37
12 10 0.33
ACGTcount: A:0.18, C:0.00, G:0.05, T:0.77
Consensus pattern (11 bp):
TTTTTATTTTA
Found at i:27222 original size:15 final size:16
Alignment explanation
Indices: 27179--27224 Score: 60
Period size: 15 Copynumber: 2.9 Consensus size: 16
27169 ATATAAATAA
27179 GAAATGGAAGAAGAAAG
1 GAAATGG-AGAAGAAAG
*
27196 GAAAT-GATAAGAAAG
1 GAAATGGAGAAGAAAG
27211 GAAATGGA-AAGAAA
1 GAAATGGAGAAGAAA
27225 TGATATCAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
15 19 0.70
16 3 0.11
17 5 0.19
ACGTcount: A:0.61, C:0.00, G:0.30, T:0.09
Consensus pattern (16 bp):
GAAATGGAGAAGAAAG
Found at i:27769 original size:19 final size:20
Alignment explanation
Indices: 27731--27773 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
27721 GAAACCCCTT
*
27731 TGAAAACACATGATTTTTAA
1 TGAAAACACATGAATTTTAA
*
27751 TGAAAATACAT-AATTTTAA
1 TGAAAACACATGAATTTTAA
27770 TGAA
1 TGAA
27774 GATAAATGCT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 11 0.52
20 10 0.48
ACGTcount: A:0.49, C:0.07, G:0.09, T:0.35
Consensus pattern (20 bp):
TGAAAACACATGAATTTTAA
Found at i:31447 original size:19 final size:20
Alignment explanation
Indices: 31409--31451 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
31399 GAAACCCCTT
*
31409 TGAAAACACATGATTTTTAA
1 TGAAAACACATGAATTTTAA
*
31429 TGAAAATACAT-AATTTTAA
1 TGAAAACACATGAATTTTAA
31448 TGAA
1 TGAA
31452 GATAAATGCT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 11 0.52
20 10 0.48
ACGTcount: A:0.49, C:0.07, G:0.09, T:0.35
Consensus pattern (20 bp):
TGAAAACACATGAATTTTAA
Found at i:35794 original size:24 final size:24
Alignment explanation
Indices: 35767--35843 Score: 91
Period size: 24 Copynumber: 3.2 Consensus size: 24
35757 TTCGATTTGA
* * *
35767 ATTCTGTTCTGATACCTGACCTGG
1 ATTCTATTCTGATATCTGATCTGG
* *
35791 ATTCTATTCTGATTTCTGATATGG
1 ATTCTATTCTGATATCTGATCTGG
* *
35815 ATTCTATTCTGATATCTCATCTGA
1 ATTCTATTCTGATATCTGATCTGG
35839 ATTCT
1 ATTCT
35844 GTTTTGATTT
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.21, C:0.19, G:0.14, T:0.45
Consensus pattern (24 bp):
ATTCTATTCTGATATCTGATCTGG
Found at i:35819 original size:48 final size:48
Alignment explanation
Indices: 35750--35860 Score: 116
Period size: 48 Copynumber: 2.3 Consensus size: 48
35740 GAATATTTTA
* * * *
35750 TCTGATTT-TCGATTTGAATTCTGTTCTGATACCTGACCTGGATTCTAT
1 TCTGATTTCT-GATATGAATTCTATTCTGATACCTCACCTGAATTCTAT
* * * *
35798 TCTGATTTCTGATATGGATTCTATTCTGATATCTCATCTGAATTCTGT
1 TCTGATTTCTGATATGAATTCTATTCTGATACCTCACCTGAATTCTAT
* *
35846 TTTGATTTCTAATAT
1 TCTGATTTCTGATAT
35861 ATCCGTTTAT
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
48 51 0.98
49 1 0.02
ACGTcount: A:0.21, C:0.16, G:0.14, T:0.49
Consensus pattern (48 bp):
TCTGATTTCTGATATGAATTCTATTCTGATACCTCACCTGAATTCTAT
Found at i:37187 original size:3 final size:3
Alignment explanation
Indices: 37179--37225 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
37169 TCAACCATTA
37179 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
37226 AAAATATTAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:40522 original size:29 final size:29
Alignment explanation
Indices: 40479--40535 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
40469 GAAAAAGATT
40479 AAATACTTTAAGTACCTATTTTGACCAAC
1 AAATACTTTAAGTACCTATTTTGACCAAC
* * *
40508 AAATATTTTAGGTACTTATTTTGACCAA
1 AAATACTTTAAGTACCTATTTTGACCAA
40536 AAGGATAAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.37, C:0.16, G:0.09, T:0.39
Consensus pattern (29 bp):
AAATACTTTAAGTACCTATTTTGACCAAC
Found at i:40581 original size:27 final size:28
Alignment explanation
Indices: 40498--40582 Score: 84
Period size: 31 Copynumber: 2.9 Consensus size: 28
40488 AAGTACCTAT
* *
40498 TTTGACCAACAAATATTTTAGGTACTTAT
1 TTTGACCAA-AAATATTTTAGATACTTAC
*
40527 TTTGACCAAAAGGATAAGTTTA-ATTACTTAC
1 TTTGACCAAAA--AT-ATTTTAGA-TACTTAC
40558 TTTGA-CAAAAATATTTTAGATACTT
1 TTTGACCAAAAATATTTTAGATACTT
40583 GGATGAAAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
27 10 0.21
28 5 0.11
29 9 0.19
30 7 0.15
31 16 0.34
ACGTcount: A:0.38, C:0.12, G:0.11, T:0.40
Consensus pattern (28 bp):
TTTGACCAAAAATATTTTAGATACTTAC
Found at i:42271 original size:31 final size:26
Alignment explanation
Indices: 42202--42264 Score: 119
Period size: 26 Copynumber: 2.5 Consensus size: 26
42192 TCAAGCTCAG
42202 CTCGAACTCGAAATATAATATTGAAA
1 CTCGAACTCGAAATATAATATTGAAA
42228 CTCGAACTCGAAATATAATATTGAAA
1 CTCGAACTCGAAATATAATATTGAAA
42254 CTCG-ACTCGAA
1 CTCGAACTCGAA
42265 CTCGAAAAGG
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 7 0.19
26 30 0.81
ACGTcount: A:0.43, C:0.19, G:0.13, T:0.25
Consensus pattern (26 bp):
CTCGAACTCGAAATATAATATTGAAA
Found at i:42280 original size:16 final size:16
Alignment explanation
Indices: 42259--42299 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
42249 TGAAACTCGA
42259 CTCGAACTCGAAAAGG
1 CTCGAACTCGAAAAGG
42275 CTCGAACTCGAAAAGG
1 CTCGAACTCGAAAAGG
*
42291 CTCAAACTC
1 CTCGAACTC
42300 ATAAAAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.37, C:0.29, G:0.20, T:0.15
Consensus pattern (16 bp):
CTCGAACTCGAAAAGG
Found at i:44998 original size:23 final size:23
Alignment explanation
Indices: 44971--45016 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
44961 CAAGGATGGT
44971 GGGTTGGAGAACGGTGGAAGGTA
1 GGGTTGGAGAACGGTGGAAGGTA
44994 GGGTTGGAGAACGGTGGAAGGTA
1 GGGTTGGAGAACGGTGGAAGGTA
45017 ATGCACTGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.04, G:0.52, T:0.17
Consensus pattern (23 bp):
GGGTTGGAGAACGGTGGAAGGTA
Found at i:46929 original size:30 final size:30
Alignment explanation
Indices: 46874--46977 Score: 154
Period size: 31 Copynumber: 3.4 Consensus size: 30
46864 TTCAACGTTC
* *
46874 AAGTGACCAAAATTTAAGAAAATGATAATTT
1 AAGTGACCAAAATTTAA-TAAATGATAATGT
* *
46905 AAGTGATCAAAATTTAATAAATGATAACGT
1 AAGTGACCAAAATTTAATAAATGATAATGT
46935 AAGTGACCAAAATTTAATAAAATGATAATGT
1 AAGTGACCAAAATTTAAT-AAATGATAATGT
46966 AAGTGACCAAAA
1 AAGTGACCAAAA
46978 CTTGTTAAAC
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
30 27 0.41
31 39 0.59
ACGTcount: A:0.52, C:0.08, G:0.13, T:0.27
Consensus pattern (30 bp):
AAGTGACCAAAATTTAATAAATGATAATGT
Found at i:50812 original size:3 final size:3
Alignment explanation
Indices: 50804--50864 Score: 97
Period size: 3 Copynumber: 20.3 Consensus size: 3
50794 AACCATTAAA
*
50804 TAT TAT TAT TAT TAT TAT TA- TAT TAT TAT TAT TAT TAT AAAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT
50849 TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT T
50865 TACATACAAA
Statistics
Matches: 54, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
2 2 0.04
3 50 0.93
4 2 0.04
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:63946 original size:30 final size:31
Alignment explanation
Indices: 63891--63994 Score: 183
Period size: 31 Copynumber: 3.4 Consensus size: 31
63881 TTCAACATTC
63891 AAGTGACCAAAATTTAATAAAATGATAATGT
1 AAGTGACCAAAATTTAATAAAATGATAATGT
* *
63922 AAGTGATCAAAATTTAAT-AAATGATAACGT
1 AAGTGACCAAAATTTAATAAAATGATAATGT
63952 AAGTGACCAAAATTTAATAAAATGATAATGT
1 AAGTGACCAAAATTTAATAAAATGATAATGT
63983 AAGTGACCAAAA
1 AAGTGACCAAAA
63995 CTTGTTAAAC
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
30 28 0.41
31 40 0.59
ACGTcount: A:0.52, C:0.08, G:0.13, T:0.27
Consensus pattern (31 bp):
AAGTGACCAAAATTTAATAAAATGATAATGT
Found at i:65245 original size:30 final size:31
Alignment explanation
Indices: 65190--65293 Score: 156
Period size: 31 Copynumber: 3.4 Consensus size: 31
65180 TTCAACGTTC
65190 AAGTGACCAAAATTTAAGAAAATGATAATGT
1 AAGTGACCAAAATTTAAGAAAATGATAATGT
* * * *
65221 AAGTTATCAAAATTTAA-TAAATGATAACGT
1 AAGTGACCAAAATTTAAGAAAATGATAATGT
*
65251 AAGTGACCAAAATTTAAGAAAATAATAATGT
1 AAGTGACCAAAATTTAAGAAAATGATAATGT
65282 AAGTGACCAAAA
1 AAGTGACCAAAA
65294 CTTGTCAAAC
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
30 26 0.41
31 37 0.59
ACGTcount: A:0.53, C:0.08, G:0.13, T:0.26
Consensus pattern (31 bp):
AAGTGACCAAAATTTAAGAAAATGATAATGT
Found at i:66474 original size:28 final size:28
Alignment explanation
Indices: 66443--66498 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
66433 TAATCTCATT
66443 ACCTCTTATTTTCTTAGATAATATTACA
1 ACCTCTTATTTTCTTAGATAATATTACA
* *
66471 ACCTCTTATTTTCTTAGGTATTATTACA
1 ACCTCTTATTTTCTTAGATAATATTACA
66499 TTTTATGAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.29, C:0.18, G:0.05, T:0.48
Consensus pattern (28 bp):
ACCTCTTATTTTCTTAGATAATATTACA
Found at i:68027 original size:16 final size:17
Alignment explanation
Indices: 68006--68037 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
67996 AAATCTGGGT
68006 TCTGGTTGGGT-TTGGA
1 TCTGGTTGGGTCTTGGA
68022 TCTGGTTGGGTCTTGG
1 TCTGGTTGGGTCTTGG
68038 GCACTGGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.03, C:0.09, G:0.44, T:0.44
Consensus pattern (17 bp):
TCTGGTTGGGTCTTGGA
Found at i:68599 original size:42 final size:42
Alignment explanation
Indices: 68525--68628 Score: 140
Period size: 42 Copynumber: 2.5 Consensus size: 42
68515 AGGCCTTTTG
* *
68525 GATGGCCCGAAGGACTT-ATCATCTTGCTCGAAAGACTTA-T
1 GATGGCCCGAAGGACTTAAGCATCATGCTCGAAAGACTTACT
* *
68565 AGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACT
1 -GATGGCCCGAAGGACTTAAGCATCATGCTCGAAAGACTTACT
*
68608 GATGGCCCGAATGACTTAAGC
1 GATGGCCCGAAGGACTTAAGC
68629 TGATTCGAAG
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
41 15 0.28
42 38 0.70
43 1 0.02
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.24
Consensus pattern (42 bp):
GATGGCCCGAAGGACTTAAGCATCATGCTCGAAAGACTTACT
Found at i:68979 original size:57 final size:57
Alignment explanation
Indices: 68834--69054 Score: 181
Period size: 57 Copynumber: 3.9 Consensus size: 57
68824 AAGGACTTAC
* * * *
68834 TCATTAAGAAACCCTTGAAAATCA-AGCTTAGTTTC-TTAAAATATTTCGTTT-ACAATTA
1 TCATTAAGAAACCCCTAAAAATCAGA-CTTAGTTTCTTTAAAA-A-TTCATTTGA-AATAA
* * * * *
68892 TCATAAAGAATCCCCTAAAAATTAGGCTTAGCTTCTTTAAAAATTC-TTTGGAAATAA
1 TCATTAAGAAACCCCTAAAAATCAGACTTAGTTTCTTTAAAAATTCATTT-GAAATAA
** * *
68949 TCATTAAGAAACCTTTGAAAATCAGACTTAGTTTC--TAAAAAATCATTTG-AA-AA
1 TCATTAAGAAACCCCTAAAAATCAGACTTAGTTTCTTTAAAAATTCATTTGAAATAA
* * * *
69002 T-ATCAAGAAACCCCTAAAAATAAGGCTTAGTTTCTTTAAAAATTCTTTTGAAA
1 TCATTAAGAAACCCCTAAAAATCAGACTTAGTTTCTTTAAAAATTCATTTGAAA
69055 ACATCATGTC
Statistics
Matches: 130, Mismatches: 25, Indels: 19
0.75 0.14 0.11
Matches are distributed among these distances:
52 27 0.21
53 3 0.02
54 14 0.11
55 11 0.08
56 6 0.05
57 34 0.26
58 29 0.22
59 6 0.05
ACGTcount: A:0.41, C:0.15, G:0.10, T:0.34
Consensus pattern (57 bp):
TCATTAAGAAACCCCTAAAAATCAGACTTAGTTTCTTTAAAAATTCATTTGAAATAA
Found at i:69061 original size:109 final size:114
Alignment explanation
Indices: 68834--69054 Score: 294
Period size: 109 Copynumber: 2.0 Consensus size: 114
68824 AAGGACTTAC
* *
68834 TCATTAAGAAACCCTTGAAAATCAAGCTTAGTTTCTTAAAATATTTCGTTTACAATTATCATAAA
1 TCATTAAGAAACCCTTGAAAATCAAGCTTAGTTTCTTAAAATATATCATTTACAA-TATCATAAA
* *
68899 GAATCCCCTAAAAATTAGGCTTAGCTTCTTTAAAAATTCTTTGGAAATAA
65 GAAACCCCTAAAAATAAGGCTTAGCTTCTTTAAAAATTCTTTGGAAATAA
* *
68949 TCATTAAGAAACCTTTGAAAATC-AGACTTAGTTTC-TAAAA-A-ATCATTTGA-AA-AT-ATCA
1 TCATTAAGAAACCCTTGAAAATCAAG-CTTAGTTTCTTAAAATATATCATTT-ACAATATCATAA
* *
69007 AGAAACCCCTAAAAATAAGGCTTAGTTTCTTTAAAAATTCTTTTGAAA
64 AGAAACCCCTAAAAATAAGGCTTAGCTTCTTTAAAAATTCTTTGGAAA
69055 ACATCATGTC
Statistics
Matches: 96, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
109 47 0.49
110 2 0.02
112 7 0.07
113 2 0.02
114 7 0.07
115 31 0.32
ACGTcount: A:0.41, C:0.15, G:0.10, T:0.34
Consensus pattern (114 bp):
TCATTAAGAAACCCTTGAAAATCAAGCTTAGTTTCTTAAAATATATCATTTACAATATCATAAAG
AAACCCCTAAAAATAAGGCTTAGCTTCTTTAAAAATTCTTTGGAAATAA
Found at i:69703 original size:22 final size:22
Alignment explanation
Indices: 69675--69720 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
69665 ATTATTTCAT
69675 ATTAACAAATTTAA-AAATATAA
1 ATTAACAAA-TTAATAAATATAA
*
69697 ATTAACAAATTAATGAATATAA
1 ATTAACAAATTAATAAATATAA
69719 AT
1 AT
69721 ATTAATTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (22 bp):
ATTAACAAATTAATAAATATAA
Found at i:72665 original size:174 final size:174
Alignment explanation
Indices: 71161--72633 Score: 2400
Period size: 174 Copynumber: 8.5 Consensus size: 174
71151 AACAACAGTC
** * * * *
71161 TGTTATAAACCCAATTCCTGCTATCTACTATCCAAATAAAGTTGGTAAG-TT-AGTAACAAT-TA
1 TGTTATAAACCCAATTCCTTTTTTCTACCATCCGAAGAAAGTTGGTAAGTTTCAGTAAC-ATGTA
* *
71223 AAAATGGATAAATCTTTTGTTA-AGAAATTAAATTTTGATCGGTCTATAATTCTTTTATTTTATC
65 GAAATGGATAAATCTTTTGTTACA-AATTTAAATTTTGATCGGTCTATAATTCTTTTATTTTATC
* * * *
71287 TCTTATAAAAAGATGGTCAAGAAATGGATAATACAGGAAAAGAATA
129 TCTTATAAATAGATGGTCAGGAAATGGACAATGCAGGAAAAGAATA
71333 TGTTATAAACCCAATTCCTTTTTTCTACCATCCGAAGAAAGTTGGTAAGTTTCAGTAACATGTAG
1 TGTTATAAACCCAATTCCTTTTTTCTACCATCCGAAGAAAGTTGGTAAGTTTCAGTAACATGTAG
* * *
71398 AAATAGATAAATATTTTGCTACAAATTTAAATTTTGATCGGTCTATAATTCTTTTATTTTATCTC
66 AAATGGATAAATCTTTTGTTACAAATTTAAATTTTGATCGGTCTATAATTCTTTTATTTTATCTC
71463 TTATAAATAGATGGTCAGGAAAT-GATCAATGCAGGAAAAGAATA
131 TTATAAATAGATGGTCAGGAAATGGA-CAATGCAGGAAAAGAATA
* *
71507 TGTTATAAACCCAATTCCTTTTTTCTACCATCCGAAGAAAGTTGGTAAGTTTCAATAACTTGTAG
1 TGTTATAAACCCAATTCCTTTTTTCTACCATCCGAAGAAAGTTGGTAAGTTTCAGTAACATGTAG
* * *
71572 TAATGGATAAATATTTTGTTACAAATTTAAATTTTGATCGGTTTATAATTCTTTTATTTTATCTC
66 AAATGGATAAATCTTTTGTTACAAATTTAAATTTTGATCGGTCTATAATTCTTTTATTTTATCTC
* * *
71637 TTATAAAAAGGTGGTCAGAAAATGGACAATGCAGGAAAAGAATA
131 TTATAAATAGATGGTCAGGAAATGGACAATGCAGGAAAAGAATA
*
71681 TGTCATAAACCCAATTCCTTTTTTCTACCATCCGAAGAAAGTTGGTAAGTTTCAGTAACATGTAG
1 TGTTATAAACCCAATTCCTTTTTTCTACCATCCGAAGAAAGTTGGTAAGTTTCAGTAACATGTAG
* *
71746 AAATGGAAAAATCTTTTGTTACAAATTGAAATTTTGATCGGTCTATAATTCTTTTATTTTATCTC
66 AAATGGATAAATCTTTTGTTACAAATTTAAATTTTGATCGGTCTATAATTCTTTTATTTTATCTC
* *
71811 TTATAAATAGATGGTCAGAAAATGGACAATGCAGGAAAAGAAAA
131 TTATAAATAGATGGTCAGGAAATGGACAATGCAGGAAAAGAATA
*
71855 TGTTATAAACCCAATTCCTTTTTTCTACCATACGAAGAAAGTTGGTAAGTTTCAGTAACATGTAG
1 TGTTATAAACCCAATTCCTTTTTTCTACCATCCGAAGAAAGTTGGTAAGTTTCAGTAACATGTAG
* *
71920 AAATGGATAAATCTTTTGTTATAAATTTAAATTTTGATCGGTCTATAACTCTTTTATTTTATCTC
66 AAATGGATAAATCTTTTGTTACAAATTTAAATTTTGATCGGTCTATAATTCTTTTATTTTATCTC
71985 TTATAAATAGATGGTCAGGAAATGGACAATGCAGGAAAAGAATA
131 TTATAAATAGATGGTCAGGAAATGGACAATGCAGGAAAAGAATA
* *
72029 TGTCATAAACCCAATTCCTTTTTTTTACCATCCGAAGAAAGTTGGTAAGTTTCAGTAACATGTAG
1 TGTTATAAACCCAATTCCTTTTTTCTACCATCCGAAGAAAGTTGGTAAGTTTCAGTAACATGTAG
* * *
72094 AAATGGTTAAATCTTTTGTTACAAATTGAAATTTTGATCGCTCTATAATTCTTTTATTTTATCTC
66 AAATGGATAAATCTTTTGTTACAAATTTAAATTTTGATCGGTCTATAATTCTTTTATTTTATCTC
*
72159 TTATAAATAGATGGTCAGGAAATGGACAATGCAGGAAAAGAAAA
131 TTATAAATAGATGGTCAGGAAATGGACAATGCAGGAAAAGAATA
*
72203 TGTTATAAACCCAATTCCTTTTTTCTACCATACGAAGAAAGTTGGTAAGTTTCAGTAACATGTAG
1 TGTTATAAACCCAATTCCTTTTTTCTACCATCCGAAGAAAGTTGGTAAGTTTCAGTAACATGTAG
*
72268 AAATGGATAAATCTTTTGTTACAAATTTAAATTTTGATCGGTCTATAATTATTTTATTTTATCTC
66 AAATGGATAAATCTTTTGTTACAAATTTAAATTTTGATCGGTCTATAATTCTTTTATTTTATCTC
* * * * *
72333 TTATAAATAGATGATCAGGAAATAGATATTGCAGAAAAAGAATA
131 TTATAAATAGATGGTCAGGAAATGGACAATGCAGGAAAAGAATA
* * *
72377 TGTTATAAATCCAATTCCTTTTTTCTACCATCCGAAGAAAATTGGCAAGTTTCAGTAACATGTAG
1 TGTTATAAACCCAATTCCTTTTTTCTACCATCCGAAGAAAGTTGGTAAGTTTCAGTAACATGTAG
* *
72442 AAATGGATAAATCTTTTGTTACAAATTTAAATTTTGATCGGTTTATAGTTCTTTTATTTTATCTC
66 AAATGGATAAATCTTTTGTTACAAATTTAAATTTTGATCGGTCTATAATTCTTTTATTTTATCTC
72507 TTATAAATAGATGGTCAGGAAATGGACAATGCAGGAAAAGAATA
131 TTATAAATAGATGGTCAGGAAATGGACAATGCAGGAAAAGAATA
* *
72551 TGTTATAAATCCAATTCCTTTTTTCTACCATCCGAAGAAAATTGGTAAGTTT-ATGTAACATGTA
1 TGTTATAAACCCAATTCCTTTTTTCTACCATCCGAAGAAAGTTGGTAAGTTTCA-GTAACATGTA
*
72615 GAAATAGATAAATCTTTTG
65 GAAATGGATAAATCTTTTG
72634 AGACGGATTT
Statistics
Matches: 1215, Mismatches: 79, Indels: 12
0.93 0.06 0.01
Matches are distributed among these distances:
172 43 0.04
173 7 0.01
174 1162 0.96
175 3 0.00
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.37
Consensus pattern (174 bp):
TGTTATAAACCCAATTCCTTTTTTCTACCATCCGAAGAAAGTTGGTAAGTTTCAGTAACATGTAG
AAATGGATAAATCTTTTGTTACAAATTTAAATTTTGATCGGTCTATAATTCTTTTATTTTATCTC
TTATAAATAGATGGTCAGGAAATGGACAATGCAGGAAAAGAATA
Found at i:74771 original size:27 final size:27
Alignment explanation
Indices: 74735--74789 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
74725 ATATTTTTTA
* * *
74735 AATTTTTTAATGCTTGATGTAGGATTT
1 AATTTATTAATACTTGATGGAGGATTT
*
74762 AATTTATTAATACTTGATGGCGGATTT
1 AATTTATTAATACTTGATGGAGGATTT
74789 A
1 A
74790 CGAAAACCAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.29, C:0.05, G:0.18, T:0.47
Consensus pattern (27 bp):
AATTTATTAATACTTGATGGAGGATTT
Found at i:77428 original size:20 final size:19
Alignment explanation
Indices: 77382--77434 Score: 52
Period size: 20 Copynumber: 2.7 Consensus size: 19
77372 TAAGGTGTTT
77382 TTTGGTATCGATACTTAGG
1 TTTGGTATCGATACTTAGG
* ** *
77401 GTAAGTATGGATACCTTAGG
1 TTTGGTATCGATA-CTTAGG
*
77421 TTTGGTATCAATAC
1 TTTGGTATCGATAC
77435 CCAAAGGTAG
Statistics
Matches: 24, Mismatches: 9, Indels: 2
0.69 0.26 0.06
Matches are distributed among these distances:
19 10 0.42
20 14 0.58
ACGTcount: A:0.26, C:0.11, G:0.25, T:0.38
Consensus pattern (19 bp):
TTTGGTATCGATACTTAGG
Found at i:80275 original size:22 final size:21
Alignment explanation
Indices: 80250--80294 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
80240 AATTAGGTCC
* *
80250 TTGTTCTTGTTTTTTTTCTATT
1 TTGTTCTTGCTATTTTT-TATT
*
80272 TTGTTTTTGCTATTTTTTATT
1 TTGTTCTTGCTATTTTTTATT
80293 TT
1 TT
80295 TTTTTATTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.07, C:0.07, G:0.09, T:0.78
Consensus pattern (21 bp):
TTGTTCTTGCTATTTTTTATT
Found at i:80316 original size:20 final size:19
Alignment explanation
Indices: 80285--80330 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
80275 TTTTTGCTAT
80285 TTTTTATT-TTTTTT--TA
1 TTTTTATTATTTTTTAGTA
80301 TTTTTATTATTATTTTAGTA
1 TTTTTATTATT-TTTTAGTA
*
80321 TTTTAATTAT
1 TTTTTATTAT
80331 GTTTATCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
16 8 0.32
17 2 0.08
18 4 0.16
20 11 0.44
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (19 bp):
TTTTTATTATTTTTTAGTA
Found at i:85819 original size:136 final size:136
Alignment explanation
Indices: 85575--86050 Score: 758
Period size: 136 Copynumber: 3.5 Consensus size: 136
85565 TGAACTGATC
* **
85575 AACATTTCTAATGGAGAGTTCATAATGAGAAGAGGTCATCCGACAGAGGGAG-AGAAAGTTCATA
1 AACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAG-AAGTTCATA
*
85639 ATGAGAAGAACTTGTTCGACCTATTGCTCGATTCAAAACACTTCGAATCAGCAACCCCTCGCTTG
65 ATGAGAAGAACTTGTTCGACCTATTGCTCGATTCAAAACACTTCGAATCAGCAACGCCTCGCTTG
85704 AGGGATT
130 AGGGATT
** *
85711 AACATTTCCAATTAAGAGTTCATAATGAGAAGAACTCATCCGACAAAGGGAGAAGAAGTTCATAA
1 AACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * *
85776 TGAGAAGTACTTGTTCGACCTATTGCTCGATTCACAAA-ACTTCGAATAAGCAATGCCTCGCTTG
66 TGAGAAGAACTTGTTCGACCTATTGCTCGATTCA-AAACACTTCGAATCAGCAACGCCTCGCTTG
85840 AGGGATT
130 AGGGATT
* *
85847 AACATTTCCAATGGAGAGTTCATAATGAGAATAACTCATCCGATAGAGGGAGAAGAAGTTCATAA
1 AACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* * *
85912 TGAAAAGAACTTGTTCGACCTATTGCTCAATTCAAAACACTTCGAATCAGTAACGCCTCGCTTGA
66 TGAGAAGAACTTGTTCGACCTATTGCTCGATTCAAAACACTTCGAATCAGCAACGCCTCGCTTGA
85977 GGGATT
131 GGGATT
* * *
85983 GACATTTCCAATGGAGAGTTCATAATGAAAAGAACTCATCCGATAGAGGGAGAAGAAGTTCATAA
1 AACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
86048 TGA
66 TGA
86051 CCTATCAGCA
Statistics
Matches: 313, Mismatches: 24, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
135 3 0.01
136 305 0.97
137 5 0.02
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (136 bp):
AACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
TGAGAAGAACTTGTTCGACCTATTGCTCGATTCAAAACACTTCGAATCAGCAACGCCTCGCTTGA
GGGATT
Found at i:86074 original size:97 final size:97
Alignment explanation
Indices: 85957--86147 Score: 319
Period size: 97 Copynumber: 2.0 Consensus size: 97
85947 AACACTTCGA
* *
85957 ATCAGTAACGCCTCGCTTGAGGGATTGACATTTCCAATGGAGAGTTCATAATGAAAAGAACTCAT
1 ATCAGCAACGCCTCGCTTGAGGGATTGACATTTCCAATAGAGAGTTCATAATGAAAAGAACTCAT
*
86022 CCGATAGAGGGAGAAGAAGTTCATAATGACCT
66 CCGAAAGAGGGAGAAGAAGTTCATAATGACCT
* ** *
86054 ATCAGCAACGCCTCGCTTGAGGGATTGATATTTCTGATAGAGAGTTCATAATGAGAAGAACTCAT
1 ATCAGCAACGCCTCGCTTGAGGGATTGACATTTCCAATAGAGAGTTCATAATGAAAAGAACTCAT
86119 CCGAAAGAGGGAGAAGAAGTTCATAATGA
66 CCGAAAGAGGGAGAAGAAGTTCATAATGA
86148 GAAGAACTTG
Statistics
Matches: 87, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
97 87 1.00
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.24
Consensus pattern (97 bp):
ATCAGCAACGCCTCGCTTGAGGGATTGACATTTCCAATAGAGAGTTCATAATGAAAAGAACTCAT
CCGAAAGAGGGAGAAGAAGTTCATAATGACCT
Found at i:87779 original size:21 final size:19
Alignment explanation
Indices: 87755--87827 Score: 56
Period size: 21 Copynumber: 3.6 Consensus size: 19
87745 TATGTCCTTG
87755 TATTTAGGTTTATTTTATTTT
1 TATTTAGGTTT-TTTT-TTTT
* *
87776 TATTTTATGTTTTTTTCTATT
1 TA-TTTAGGTTTTTTT-TTTT
* *
87797 TATTTATTGTTTTATTTTTT
1 TATTTA-GGTTTTTTTTTTT
*
87817 TAATTAGGTTT
1 TATTTAGGTTT
87828 ATTAAATGTT
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
19 4 0.09
20 12 0.28
21 19 0.44
22 8 0.19
ACGTcount: A:0.18, C:0.01, G:0.08, T:0.73
Consensus pattern (19 bp):
TATTTAGGTTTTTTTTTTT
Found at i:87791 original size:16 final size:15
Alignment explanation
Indices: 87763--87814 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 15
87753 TGTATTTAGG
87763 TTTATTTTATTTTTAT
1 TTTATTTT-TTTTTAT
87779 TTTATGTTTTTTTCTA-
1 TTTAT-TTTTTTT-TAT
87795 TTTATTTATTGTTTTAT
1 TTTATTT-TT-TTTTAT
87812 TTT
1 TTT
87815 TTTAATTAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
15 2 0.06
16 18 0.58
17 11 0.35
ACGTcount: A:0.15, C:0.02, G:0.04, T:0.79
Consensus pattern (15 bp):
TTTATTTTTTTTTAT
Found at i:90191 original size:14 final size:15
Alignment explanation
Indices: 90167--90195 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
90157 TTTCACTAAG
90167 AAATAAATTTTTGAA
1 AAATAAATTTTTGAA
90182 AAAT-AATTTTTGAA
1 AAATAAATTTTTGAA
90196 CCATGATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (15 bp):
AAATAAATTTTTGAA
Found at i:95497 original size:20 final size:20
Alignment explanation
Indices: 95415--95509 Score: 100
Period size: 21 Copynumber: 4.6 Consensus size: 20
95405 TCGTACCAAG
* *
95415 GACGAGAAGAGCATTCATCAA
1 GACGAGAAGA-CCTTCATAAA
* * *
95436 GACGAGAAGGCAATTCATCAA
1 GACGAGAAGAC-CTTCATAAA
*
95457 GACGAGGAGACTCTTCATAAA
1 GACGAGAAGAC-CTTCATAAA
*
95478 GACGAGAAGACCTTCGTAAA
1 GACGAGAAGACCTTCATAAA
95498 GACGAGAAGACC
1 GACGAGAAGACC
95510 ACTTCGCATG
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
20 21 0.32
21 44 0.68
ACGTcount: A:0.41, C:0.20, G:0.25, T:0.14
Consensus pattern (20 bp):
GACGAGAAGACCTTCATAAA
Found at i:98137 original size:15 final size:14
Alignment explanation
Indices: 98097--98142 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
98087 GAAAGAGAAA
98097 AAGAAAA-GAAAAG
1 AAGAAAATGAAAAG
*
98110 AAGAAATTGAAAAG
1 AAGAAAATGAAAAG
*
98124 GAGAAAAATGAAAA-
1 AAG-AAAATGAAAAG
98138 AAGAA
1 AAGAA
98143 TGAAAGAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
13 8 0.30
14 10 0.37
15 9 0.33
ACGTcount: A:0.72, C:0.00, G:0.22, T:0.07
Consensus pattern (14 bp):
AAGAAAATGAAAAG
Found at i:100696 original size:214 final size:214
Alignment explanation
Indices: 100327--102183 Score: 2829
Period size: 212 Copynumber: 8.8 Consensus size: 214
100317 TGAAGCAAAT
* * *
100327 CCATCCATAAAACCTTCGGGTAGGATGTTTTCATTGAATTTGAAAATGAAAAAAATGATGATTTG
1 CCATCCATAAAACCTTCGGGTAGGATGTTTTCAATGAATTTGAAAATG-AAAAAATGATGTTTTA
* * *
100392 AGAAGATGAAA-TTTTGAAAACGAAGAATGCGAGTTTCAAAATTTCACAATGTATAAGTCCTTCG
65 AGAAGATGAAATTTTTGAAAACGAAGAATGCGAGTTTCAAAATTTCCCAATTTATAAGTCCTCCG
* * * * *
100456 GGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGA
130 GGCCATCAGTAAGCCTTCCGAGCATGATGATTAAATCCTCCGGGTCATCTGTAAGCCTTTAGAGC
100521 AAGATGATAAGTCCTTCGGG
195 AAGATGATAAGTCCTTCGGG
* *
100541 CCATCCATAAAACCTTCGGGTAGGATG-ATTCAAATGAATTTGAAAGTGAAAAAATGATGTTTTA
1 CCATCCATAAAACCTTCGGGTAGGATGTTTTC-AATGAATTTGAAAATGAAAAAATGATGTTTTA
* ** * * *
100605 AGATGATGAAATTTTTGAAAACGAAGAATTTGAGTTTCAAAATTTCACAATTGATAAGTCCTTCG
65 AGAAGATGAAATTTTTGAAAACGAAGAATGCGAGTTTCAAAATTTCCCAATTTATAAGTCCTCCG
* * * *
100670 GGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGC
130 GGCCATCAGTAAGCCTTCCGAGCATGATGATTAAATCCTCCGGGTCATCTGTAAGCCTTTAGAGC
100735 AAGATGATAAGTCCTTCGGG
195 AAGATGATAAGTCCTTCGGG
* * *
100755 CCATCCGTAAGACCTTCGGGTAGGATG-TTTCAAATAAATTTGAAAATGAAAAAATGATGTTTTA
1 CCATCCATAAAACCTTCGGGTAGGATGTTTTC-AATGAATTTGAAAATGAAAAAATGATGTTTTA
* * * *
100819 AGATGATGAAATTTTTGAAAACGAAGAATGCGAGTTTCAAAATTTCACAATTGATAAGTCCCCCG
65 AGAAGATGAAATTTTTGAAAACGAAGAATGCGAGTTTCAAAATTTCCCAATTTATAAGTCCTCCG
*
100884 GGCCATCAATAAGCCTTCCGAGCATGATGATTAAATCCTCCGGGTCATCTGTAAGCCTTTAGAGC
130 GGCCATCAGTAAGCCTTCCGAGCATGATGATTAAATCCTCCGGGTCATCTGTAAGCCTTTAGAGC
100949 AAGATGATAAGTCCTTCGGG
195 AAGATGATAAGTCCTTCGGG
* * *
100969 CCATCCATAAAACCTTCGGGTAGGATGTTTTCATTGAA-CTGAAACTG-AAAAATGATGTTTTAA
1 CCATCCATAAAACCTTCGGGTAGGATGTTTTCAATGAATTTGAAAATGAAAAAATGATGTTTTAA
* *
101032 GAAGATGGATTTTTTGAAAACGAAGAATGCGAGTTTCAAAATTTCCCAATTTATAAGTCCTCCGG
66 GAAGATGAAATTTTTGAAAACGAAGAATGCGAGTTTCAAAATTTCCCAATTTATAAGTCCTCCGG
*
101097 GCCATCAGTAAGCCTTCCGAGCATGATGATTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGCA
131 GCCATCAGTAAGCCTTCCGAGCATGATGATTAAATCCTCCGGGTCATCTGTAAGCCTTTAGAGCA
*
101162 AGATGATGAGTCCTTCGGG
196 AGATGATAAGTCCTTCGGG
101181 CCATCCATAAAACCTTCGGGTAGGATGTTTTCAATGAATTTGAAAATGAAAAAATGATG--TT--
1 CCATCCATAAAACCTTCGGGTAGGATGTTTTCAATGAATTTGAAAATGAAAAAATGATGTTTTAA
*
101242 G--GA-G---TTTTTGAAAACGAAGAATGCGAGTTTCAAAATTTCCCAATTTATAAGTCCTCTGG
66 GAAGATGAAATTTTTGAAAACGAAGAATGCGAGTTTCAAAATTTCCCAATTTATAAGTCCTCCGG
101301 GCCATCAGTAAGCCTTCCGAGCATGATGATTAAATCCTCCGGGTCATCTGTAAGCCTTTAGAGCA
131 GCCATCAGTAAGCCTTCCGAGCATGATGATTAAATCCTCCGGGTCATCTGTAAGCCTTTAGAGCA
101366 AGATGATAAGTCCTTCGGG
196 AGATGATAAGTCCTTCGGG
* * * *
101385 CCATCCATGAGACCTTCGGGTAGGATGTTTTCAAATGAATTTAAAAATGAAAAAA--ATGATATT
1 CCATCCATAAAACCTTCGGGTAGGATGTTTTC-AATGAATTTGAAAATGAAAAAATGATG-TTTT
*
101448 --G--GA-G---TTTCTGAAAACGAAGAATGCGAGTTTCAAAATTTCCCAATTTATAAGTCCTCC
64 AAGAAGATGAAATTTTTGAAAACGAAGAATGCGAGTTTCAAAATTTCCCAATTTATAAGTCCTCC
101505 GGGCCATCAGTAAGCCTTCCGAGCATGATGATTAAATCCTCCGGGTCATCTGTAAGCCTTTAGAG
129 GGGCCATCAGTAAGCCTTCCGAGCATGATGATTAAATCCTCCGGGTCATCTGTAAGCCTTTAGAG
101570 CAAGATGATAAGTCCTTCGGG
194 CAAGATGATAAGTCCTTCGGG
*
101591 CCATCCATAAAACCTTCGGGTAGGATGTTTTCATTGAA-TTGAAAATG-AAAAATGATGTTTTAA
1 CCATCCATAAAACCTTCGGGTAGGATGTTTTCAATGAATTTGAAAATGAAAAAATGATGTTTTAA
* *
101654 GAAGATGGATTTTTTGAAAACGAAGAATGCGAGTTTCAAAATTTCCCAATTTATAAGTCCTCCGG
66 GAAGATGAAATTTTTGAAAACGAAGAATGCGAGTTTCAAAATTTCCCAATTTATAAGTCCTCCGG
*
101719 GCCATCAGTAAGTCTTCCGAGCATGATGATTAAATCCTCCGGGTCATCTGTAAGCCTTTAGAGCA
131 GCCATCAGTAAGCCTTCCGAGCATGATGATTAAATCCTCCGGGTCATCTGTAAGCCTTTAGAGCA
101784 AGATGATAAGTCCTTCGGG
196 AGATGATAAGTCCTTCGGG
* *
101803 CTATCCATAAGACCTTCGGGTAGGATGTTTTCAAATGAATTTGAAAATGAAAAAATGA-----T-
1 CCATCCATAAAACCTTCGGGTAGGATGTTTTC-AATGAATTTGAAAATGAAAAAATGATGTTTTA
* *
101862 ---A-TTGAAATTTTTGAAAACGAAGAATGCGAGTTTCAAAATTTCACAATTTATAAGTCCTCCG
65 AGAAGATGAAATTTTTGAAAACGAAGAATGCGAGTTTCAAAATTTCCCAATTTATAAGTCCTCCG
* *
101923 GGCCATCAGTAAGTCTTCCGAGCATGATGATTAAATCCTCCGGGTCATCTGTAAGCGTTTAGAGC
130 GGCCATCAGTAAGCCTTCCGAGCATGATGATTAAATCCTCCGGGTCATCTGTAAGCCTTTAGAGC
101988 AAGATGATAAGTCCTTCGGG
195 AAGATGATAAGTCCTTCGGG
*
102008 CCATCCATAAAACCTTCGGGTAGGATGTTTTCATTGAA-TTGAAAATG-AAAAATGATGTTTTAA
1 CCATCCATAAAACCTTCGGGTAGGATGTTTTCAATGAATTTGAAAATGAAAAAATGATGTTTTAA
* * * *
102071 GAAGATGGATTTTTTGAAAACGAAGAATGCGAGTTTCAAAATCTCCCAATTTATAAGTCCTCTGG
66 GAAGATGAAATTTTTGAAAACGAAGAATGCGAGTTTCAAAATTTCCCAATTTATAAGTCCTCCGG
* * *
102136 GCCATCAGTAAGCCTTCCGAGCATGATGATTAAGTCCTTCGGGCCATC
131 GCCATCAGTAAGCCTTCCGAGCATGATGATTAAATCCTCCGGGTCATC
102184 CATAAAACCC
Statistics
Matches: 1532, Mismatches: 79, Indels: 66
0.91 0.05 0.04
Matches are distributed among these distances:
202 8 0.01
203 17 0.01
204 182 0.12
205 199 0.13
206 175 0.11
207 2 0.00
208 4 0.00
209 1 0.00
210 2 0.00
211 1 0.00
212 461 0.30
213 46 0.03
214 422 0.28
215 12 0.01
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (214 bp):
CCATCCATAAAACCTTCGGGTAGGATGTTTTCAATGAATTTGAAAATGAAAAAATGATGTTTTAA
GAAGATGAAATTTTTGAAAACGAAGAATGCGAGTTTCAAAATTTCCCAATTTATAAGTCCTCCGG
GCCATCAGTAAGCCTTCCGAGCATGATGATTAAATCCTCCGGGTCATCTGTAAGCCTTTAGAGCA
AGATGATAAGTCCTTCGGG
Found at i:100765 original size:41 final size:41
Alignment explanation
Indices: 100656--100770 Score: 140
Period size: 42 Copynumber: 2.8 Consensus size: 41
100646 ATTTCACAAT
* * *
100656 TGATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGA
1 TGATAAGTCCTTCGGGCCATCAGTAAGCCTTTAGAGCAAGA
* * * *
100697 TGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGCAAGA
1 TG-ATAAGTCCTTCGGGCCATCAGTAAGCCTTTAGAGCAAGA
*
100739 TGATAAGTCCTTCGGGCCATCCGTAAGACCTT
1 TGATAAGTCCTTCGGGCCATCAGTAAG-CCTT
100771 CGGGTAGGAT
Statistics
Matches: 61, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
41 23 0.38
42 38 0.62
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.30
Consensus pattern (41 bp):
TGATAAGTCCTTCGGGCCATCAGTAAGCCTTTAGAGCAAGA
Found at i:100940 original size:42 final size:41
Alignment explanation
Indices: 100870--100973 Score: 109
Period size: 42 Copynumber: 2.5 Consensus size: 41
100860 ATTTCACAAT
* * ** * *
100870 TGATAAGTCCCCCGGGCCATCAATAAGCCTTCCGAGCATGA
1 TGATAAATCCTCCGGGCCATCTGTAAGCCTTCAGAGCAAGA
* *
100911 TGATTAAATCCTCCGGGTCATCTGTAAGCCTTTAGAGCAAGA
1 TGA-TAAATCCTCCGGGCCATCTGTAAGCCTTCAGAGCAAGA
* *
100953 TGATAAGTCCTTCGGGCCATC
1 TGATAAATCCTCCGGGCCATC
100974 CATAAAACCT
Statistics
Matches: 51, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
41 18 0.35
42 33 0.65
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (41 bp):
TGATAAATCCTCCGGGCCATCTGTAAGCCTTCAGAGCAAGA
Found at i:101167 original size:42 final size:41
Alignment explanation
Indices: 101084--101185 Score: 114
Period size: 42 Copynumber: 2.5 Consensus size: 41
101074 TTCCCAATTT
* * * *
101084 ATAAGTCCTCCGGGCCATCAGTAAGCCTTCCGAGCATGATG
1 ATAAATCCTTCGGGCCATCAGTAAGCCTTCAGAGCAAGATG
* * *
101125 ATTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGCAAGATG
1 A-TAAATCCTTCGGGCCATCAGTAAGCCTTCAGAGCAAGATG
* *
101167 ATGAGTCCTTCGGGCCATC
1 ATAAATCCTTCGGGCCATC
101186 CATAAAACCT
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
41 16 0.32
42 34 0.68
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (41 bp):
ATAAATCCTTCGGGCCATCAGTAAGCCTTCAGAGCAAGATG
Found at i:101355 original size:42 final size:41
Alignment explanation
Indices: 101288--101389 Score: 114
Period size: 42 Copynumber: 2.5 Consensus size: 41
101278 TTCCCAATTT
* * * *
101288 ATAAGTCCTCTGGGCCATCAGTAAGCCTTCCGAGCATGATG
1 ATAAATCCTCCGGGCCATCAGTAAGCCTTCAGAGCAAGATG
* * *
101329 ATTAAATCCTCCGGGTCATCTGTAAGCCTTTAGAGCAAGATG
1 A-TAAATCCTCCGGGCCATCAGTAAGCCTTCAGAGCAAGATG
* *
101371 ATAAGTCCTTCGGGCCATC
1 ATAAATCCTCCGGGCCATC
101390 CATGAGACCT
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
41 16 0.32
42 34 0.68
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.26
Consensus pattern (41 bp):
ATAAATCCTCCGGGCCATCAGTAAGCCTTCAGAGCAAGATG
Found at i:101560 original size:42 final size:41
Alignment explanation
Indices: 101494--101595 Score: 123
Period size: 42 Copynumber: 2.5 Consensus size: 41
101484 TTCCCAATTT
* * *
101494 ATAAGTCCTCCGGGCCATCAGTAAGCCTTCCGAGCATGATG
1 ATAAATCCTCCGGGCCATCAGTAAGCCTTCAGAGCAAGATG
* * *
101535 ATTAAATCCTCCGGGTCATCTGTAAGCCTTTAGAGCAAGATG
1 A-TAAATCCTCCGGGCCATCAGTAAGCCTTCAGAGCAAGATG
* *
101577 ATAAGTCCTTCGGGCCATC
1 ATAAATCCTCCGGGCCATC
101596 CATAAAACCT
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
41 16 0.31
42 35 0.69
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (41 bp):
ATAAATCCTCCGGGCCATCAGTAAGCCTTCAGAGCAAGATG
Found at i:101656 original size:622 final size:627
Alignment explanation
Indices: 100327--102183 Score: 2948
Period size: 622 Copynumber: 2.9 Consensus size: 627
100317 TGAAGCAAAT
* *
100327 CCATCCATAAAACCTTCGGGTAGGATGTTTTCATTGAATTTGAAAATGAAAAAAATGATGATTTG
1 CCATCCATAAAACCTTCGGGTAGGATGTTTTCATTGAA-TTGAAAATG--AAAAATGATGTTTTA
** * * *
100392 AGAAGAT-GAAATTTTGAAAACGAAGAATGCGAGTTTCAAAATTTCACAATGTATAAGTCCTTCG
63 AGAAGATGGATTTTTTGAAAACGAAGAATGCGAGTTTCAAAATTTCCCAATTTATAAGTCCTCCG
* * *
100456 GGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGA
128 GGCCATCAGTAAGTCTTCCGAGCATGATGATTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGC
*
100521 AAGATGATAAGTCCTTCGGGCCATCCATAAAACCTTCGGGTAGGATG-ATTCAAATGAATTTGAA
193 AAGATGATAAGTCCTTCGGGCCATCCATAAAACCTTCGGGTAGGATGTTTTCAAATGAATTTGAA
* **
100585 AGTGAAAAAATGATGTTTTAAGATGATGAAATTTTTGAAAACGAAGAATTTGAGTTTCAAAATTT
258 AATGAAAAAATGATG--TT--G--GA-G---TTTTTGAAAACGAAGAATGCGAGTTTCAAAATTT
* * * *
100650 CACAATTGATAAGTCCT-TCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGG
313 CACAATTTATAAGTCCTCT-GGGCCATCAGTAAGTCTTCCGAGCATGATGATTAAATCCTCCGGG
*
100714 TCATCTGTAAGCCTTTAGAGCAAGATGATAAGTCCTTCGGGCCATCCGTAAGACCTTCGGGTAGG
377 TCATCTGTAAGCCTTTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAGG
*
100779 ATG-TTTCAAATAAATTTGAAAATG-AAAAAATGATGTTTTAAGATGATGAAATTTTTGAAAACG
442 ATGTTTTCAAATGAATTTGAAAATGAAAAAAATGA--TTTT-AGA-GATG--ATTTTTGAAAACG
* * * *
100842 AAGAATGCGAGTTTCAAAATTTCACAATTGATAAGTCCCCCGGGCCATCAATAAGCCTTCCGAGC
501 AAGAATGCGAGTTTCAAAATTTCCCAATTTATAAGTCCTCCGGGCCATCAGTAAGCCTTCCGAGC
100907 ATGATGATTAAATCCTCCGGGTCATCTGTAAGCCTTTAGAGCAAGATGATAAGTCCTTCGGG
566 ATGATGATTAAATCCTCCGGGTCATCTGTAAGCCTTTAGAGCAAGATGATAAGTCCTTCGGG
* *
100969 CCATCCATAAAACCTTCGGGTAGGATGTTTTCATTGAACTGAAACTGAAAAATGATGTTTTAAGA
1 CCATCCATAAAACCTTCGGGTAGGATGTTTTCATTGAATTGAAAATGAAAAATGATGTTTTAAGA
101034 AGATGGATTTTTTGAAAACGAAGAATGCGAGTTTCAAAATTTCCCAATTTATAAGTCCTCCGGGC
66 AGATGGATTTTTTGAAAACGAAGAATGCGAGTTTCAAAATTTCCCAATTTATAAGTCCTCCGGGC
*
101099 CATCAGTAAGCCTTCCGAGCATGATGATTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGCAAG
131 CATCAGTAAGTCTTCCGAGCATGATGATTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGCAAG
*
101164 ATGATGAGTCCTTCGGGCCATCCATAAAACCTTCGGGTAGGATGTTTTC-AATGAATTTGAAAAT
196 ATGATAAGTCCTTCGGGCCATCCATAAAACCTTCGGGTAGGATGTTTTCAAATGAATTTGAAAAT
*
101228 GAAAAAATGATGTTGGAGTTTTTGAAAACGAAGAATGCGAGTTTCAAAATTTCCCAATTTATAAG
261 GAAAAAATGATGTTGGAGTTTTTGAAAACGAAGAATGCGAGTTTCAAAATTTCACAATTTATAAG
*
101293 TCCTCTGGGCCATCAGTAAGCCTTCCGAGCATGATGATTAAATCCTCCGGGTCATCTGTAAGCCT
326 TCCTCTGGGCCATCAGTAAGTCTTCCGAGCATGATGATTAAATCCTCCGGGTCATCTGTAAGCCT
*
101358 TTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATGAGACCTTCGGGTAGGATGTTTTCAAATGA
391 TTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAGGATGTTTTCAAATGA
* * *
101423 ATTTAAAAATGAAAAAAATGATATT-G-GA-G-TTTCTGAAAACGAAGAATGCGAGTTTCAAAAT
456 ATTTGAAAATGAAAAAAATGATTTTAGAGATGATTTTTGAAAACGAAGAATGCGAGTTTCAAAAT
101484 TTCCCAATTTATAAGTCCTCCGGGCCATCAGTAAGCCTTCCGAGCATGATGATTAAATCCTCCGG
521 TTCCCAATTTATAAGTCCTCCGGGCCATCAGTAAGCCTTCCGAGCATGATGATTAAATCCTCCGG
101549 GTCATCTGTAAGCCTTTAGAGCAAGATGATAAGTCCTTCGGG
586 GTCATCTGTAAGCCTTTAGAGCAAGATGATAAGTCCTTCGGG
101591 CCATCCATAAAACCTTCGGGTAGGATGTTTTCATTGAATTGAAAATGAAAAATGATGTTTTAAGA
1 CCATCCATAAAACCTTCGGGTAGGATGTTTTCATTGAATTGAAAATGAAAAATGATGTTTTAAGA
101656 AGATGGATTTTTTGAAAACGAAGAATGCGAGTTTCAAAATTTCCCAATTTATAAGTCCTCCGGGC
66 AGATGGATTTTTTGAAAACGAAGAATGCGAGTTTCAAAATTTCCCAATTTATAAGTCCTCCGGGC
*
101721 CATCAGTAAGTCTTCCGAGCATGATGATTAAATCCTCCGGGTCATCTGTAAGCCTTTAGAGCAAG
131 CATCAGTAAGTCTTCCGAGCATGATGATTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGCAAG
* *
101786 ATGATAAGTCCTTCGGGCTATCCATAAGACCTTCGGGTAGGATGTTTTCAAATGAATTTGAAAAT
196 ATGATAAGTCCTTCGGGCCATCCATAAAACCTTCGGGTAGGATGTTTTCAAATGAATTTGAAAAT
* * *
101851 GAAAAAATGATATTGAAATTTTTGAAAACGAAGAATGCGAGTTTCAAAATTTCACAATTTATAAG
261 GAAAAAATGATGTTGGAGTTTTTGAAAACGAAGAATGCGAGTTTCAAAATTTCACAATTTATAAG
* *
101916 TCCTCCGGGCCATCAGTAAGTCTTCCGAGCATGATGATTAAATCCTCCGGGTCATCTGTAAGCGT
326 TCCTCTGGGCCATCAGTAAGTCTTCCGAGCATGATGATTAAATCCTCCGGGTCATCTGTAAGCCT
* *
101981 TTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAAACCTTCGGGTAGGATGTTTTC-ATTGA
391 TTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAGGATGTTTTCAAATGA
*
102045 A-TTGAAAATGAAAAATGATG-TTTTAAGAAGATGGATTTTTTGAAAACGAAGAATGCGAGTTTC
456 ATTTGAAAATGAAAAA-AATGATTTT-AG-AGAT-GA-TTTTTGAAAACGAAGAATGCGAGTTTC
* * *
102108 AAAATCTCCCAATTTATAAGTCCTCTGGGCCATCAGTAAGCCTTCCGAGCATGATGATTAAGTCC
516 AAAATTTCCCAATTTATAAGTCCTCCGGGCCATCAGTAAGCCTTCCGAGCATGATGATTAAATCC
* *
102173 TTCGGGCCATC
581 TCCGGGTCATC
102184 CATAAAACCC
Statistics
Matches: 1140, Mismatches: 60, Indels: 43
0.92 0.05 0.03
Matches are distributed among these distances:
621 16 0.01
622 379 0.33
623 196 0.17
625 3 0.00
626 2 0.00
627 1 0.00
628 1 0.00
629 97 0.09
630 157 0.14
631 20 0.02
632 9 0.01
633 1 0.00
634 2 0.00
636 1 0.00
638 2 0.00
639 20 0.02
640 185 0.16
641 10 0.01
642 38 0.03
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (627 bp):
CCATCCATAAAACCTTCGGGTAGGATGTTTTCATTGAATTGAAAATGAAAAATGATGTTTTAAGA
AGATGGATTTTTTGAAAACGAAGAATGCGAGTTTCAAAATTTCCCAATTTATAAGTCCTCCGGGC
CATCAGTAAGTCTTCCGAGCATGATGATTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGCAAG
ATGATAAGTCCTTCGGGCCATCCATAAAACCTTCGGGTAGGATGTTTTCAAATGAATTTGAAAAT
GAAAAAATGATGTTGGAGTTTTTGAAAACGAAGAATGCGAGTTTCAAAATTTCACAATTTATAAG
TCCTCTGGGCCATCAGTAAGTCTTCCGAGCATGATGATTAAATCCTCCGGGTCATCTGTAAGCCT
TTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAGGATGTTTTCAAATGA
ATTTGAAAATGAAAAAAATGATTTTAGAGATGATTTTTGAAAACGAAGAATGCGAGTTTCAAAAT
TTCCCAATTTATAAGTCCTCCGGGCCATCAGTAAGCCTTCCGAGCATGATGATTAAATCCTCCGG
GTCATCTGTAAGCCTTTAGAGCAAGATGATAAGTCCTTCGGG
Found at i:101772 original size:42 final size:42
Alignment explanation
Indices: 101711--101803 Score: 107
Period size: 42 Copynumber: 2.2 Consensus size: 42
101701 AATTTATAAG
* * *
101711 TCCTCCGGGCCATCAGTAAGTCTTCCGAGCATGATGATTAAA
1 TCCTCCGGGCCATCAGTAAGCCTTCAGAGCAAGATGATTAAA
* * * *
101753 TCCTCCGGGTCATCTGTAAGCCTTTAGAGCAAGATGA-TAAG
1 TCCTCCGGGCCATCAGTAAGCCTTCAGAGCAAGATGATTAAA
*
101794 TCCTTCGGGC
1 TCCTCCGGGC
101804 TATCCATAAG
Statistics
Matches: 42, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
41 11 0.26
42 31 0.74
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.27
Consensus pattern (42 bp):
TCCTCCGGGCCATCAGTAAGCCTTCAGAGCAAGATGATTAAA
Found at i:101988 original size:42 final size:41
Alignment explanation
Indices: 101911--102012 Score: 107
Period size: 42 Copynumber: 2.5 Consensus size: 41
101901 TTCACAATTT
* * *
101911 ATAAGTCCTCCGGGCCATCAGTAAGTCTTCCGAGCATGATG
1 ATAAATCCTCCGGGCCATCAGTAAGTCTTCAGAGCAAGATG
* * *
101952 ATTAAATCCTCCGGGTCATCTGTAAG-CGTTTAGAGCAAGATG
1 A-TAAATCCTCCGGGCCATCAGTAAGTC-TTCAGAGCAAGATG
* *
101994 ATAAGTCCTTCGGGCCATC
1 ATAAATCCTCCGGGCCATC
102013 CATAAAACCT
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
41 17 0.34
42 33 0.66
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (41 bp):
ATAAATCCTCCGGGCCATCAGTAAGTCTTCAGAGCAAGATG
Found at i:102282 original size:174 final size:170
Alignment explanation
Indices: 101984--102315 Score: 524
Period size: 174 Copynumber: 1.9 Consensus size: 170
101974 TAAGCGTTTA
* * *
101984 GAGCAAGATGATAAGTCCTTCGGGCCATCCATAAAACCTTCGGGTAGGATGTTTTCATTGAATTG
1 GAGCAAGATGATAAGTCCTTCGGGCCATCCATAAAACCCTCGGGTAGGATGTTTGCAATGAATTG
*
102049 AAAATGAAAAATGATGTTTTAAGAAGATGGATTTTTTGAAAACGAAGAATGCGAGTTTCAAAATC
66 AAAATGAAAAATGATGTTTTAAGAAGATGAATTTTTTGAAAACGAAGAATGCGAGTTTCAAAATC
*
102114 TCCCAATTTATAAGTCC-TCTGGGCCATCAGTAAGCCTTCC
131 TCACAATTTATAAGTCCTTC-GGGCCATCAGTAAGCCTTCC
* *
102154 GAGCATGATGATTAAGTCCTTCGGGCCATCCATAAAACCCTCGGGTCGGATGTTTGCACATGAAT
1 GAGCAAGATGA-TAAGTCCTTCGGGCCATCCATAAAACCCTCGGGTAGGATGTTTGCA-ATGAA-
102219 TTGAAAATGAAAAAATGATGTTTTAA-AATGATGAATTTTTTGAAAACGAAGAATGCGAGTTTCA
63 TTGAAAATG-AAAAATGATGTTTTAAGAA-GATGAATTTTTTGAAAACGAAGAATGCGAGTTTCA
*
102283 AAATTTCACAATTTATAAGTCCTTCGGGCCATC
126 AAATCTCACAATTTATAAGTCCTTCGGGCCATC
102316 CATAAGACCT
Statistics
Matches: 148, Mismatches: 8, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
170 10 0.07
171 43 0.29
172 4 0.03
173 11 0.07
174 78 0.53
175 2 0.01
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (170 bp):
GAGCAAGATGATAAGTCCTTCGGGCCATCCATAAAACCCTCGGGTAGGATGTTTGCAATGAATTG
AAAATGAAAAATGATGTTTTAAGAAGATGAATTTTTTGAAAACGAAGAATGCGAGTTTCAAAATC
TCACAATTTATAAGTCCTTCGGGCCATCAGTAAGCCTTCC
Found at i:102340 original size:132 final size:132
Alignment explanation
Indices: 102165--102443 Score: 409
Period size: 132 Copynumber: 2.1 Consensus size: 132
102155 AGCATGATGA
* ** * *
102165 TTAAGTCCTTCGGGCCATCCATAAAACCCTCGGGTCGGATGTTTGCACATGAATTTGAAAAT-GA
1 TTAAGTCCTTCGGGCCATCCATAAAACCCTCGGGTAGGATGTTTGCA-ATGAACCTAAAAATAAA
*
102229 AAAAATGATGTTTTAAAATGATGAATTTTTTGAAAACGAAGAATGCGAGTTTCAAAATTTCAC-A
65 AAAAATGATGTTTTAAAATGATGAAATTTTTGAAAACGAAGAATGCGAGTTTCAAAATTTCACAA
102293 ATT
130 ATT
* * * *
102296 TATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAGGATGTTTTCATTGAACCTAAAAATAAA
1 T-TAAGTCCTTCGGGCCATCCATAAAACCCTCGGGTAGGATGTTTGCAATGAACCTAAAAATAAA
*
102361 AAAAATGATGTTTTAAGATGATGAAATTTTTGAAAACGAAGAATGCGAGTTTCAAAATTTCACAA
65 AAAAATGATGTTTTAAAATGATGAAATTTTTGAAAACGAAGAATGCGAGTTTCAAAATTTCACAA
102426 ATT
130 ATT
*
102429 TTAAAATCCTTCGGG
1 TT-AAGTCCTTCGGG
102444 TAATTTTTAA
Statistics
Matches: 132, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
131 11 0.08
132 105 0.80
133 16 0.12
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (132 bp):
TTAAGTCCTTCGGGCCATCCATAAAACCCTCGGGTAGGATGTTTGCAATGAACCTAAAAATAAAA
AAAATGATGTTTTAAAATGATGAAATTTTTGAAAACGAAGAATGCGAGTTTCAAAATTTCACAAA
TT
Found at i:112518 original size:131 final size:130
Alignment explanation
Indices: 112350--112713 Score: 363
Period size: 131 Copynumber: 2.8 Consensus size: 130
112340 CGATATTGAG
* * * * ** *
112350 AATAATAATATCTTTTCATTTTGGTTGGAGTAATAAATGAATGCTTTAAGGCATGAGATGTCATT
1 AATAATGATATCTCTTCATTTCGATTGGAACAATAAATGAATGCTTTAAGGTATGAGA-GTCATT
* * * * *
112415 TATTCTCGATTGAAAATAATTTGATATTATCGTTTTCTCTCGAATTAATATTG-ATTTTCAAGAT
65 TATTCTCGATTGAAAATAATTAGATATTATCATTTTCACTCGAATCAATATTGAATTTT-AAGAC
**
112479 GG
129 AA
* * * * *
112481 CATACTGATATCTCTTCATTTCGATTGGAACAGTAAATGACTACTTTAAGGTATGAGAGATCATT
1 AATAATGATATCTCTTCATTTCGATTGGAACAATAAATGAATGCTTTAAGGTATGAGAG-TCATT
* * * *
112546 TATTCTCGATTGAAAATTATTAGATAATATCATTTTCACTCGGATCGATATTGAATTTTAAGACA
65 TATTCTCGATTGAAAATAATTAGATATTATCATTTTCACTCGAATCAATATTGAATTTTAAGACA
112611 A
130 A
* * ** * * * **
112612 AATAATGATATTTTTTCATTTCGATTGGAGTAATAAATGATTGTTTTAAGATATGAGAGGTTGTT
1 AATAATGATATCTCTTCATTTCGATTGGAACAATAAATGAATGCTTTAAGGTATGAGA-GTCATT
* *
112677 TATTCTCGATTGGAAATAAGTAGATATTA-CTATTTTC
65 TATTCTCGATTGAAAATAATTAGATATTATC-ATTTTC
112714 TCTTTTAAAA
Statistics
Matches: 189, Mismatches: 40, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
130 2 0.01
131 181 0.96
132 6 0.03
ACGTcount: A:0.33, C:0.10, G:0.16, T:0.41
Consensus pattern (130 bp):
AATAATGATATCTCTTCATTTCGATTGGAACAATAAATGAATGCTTTAAGGTATGAGAGTCATTT
ATTCTCGATTGAAAATAATTAGATATTATCATTTTCACTCGAATCAATATTGAATTTTAAGACAA
Found at i:115217 original size:64 final size:64
Alignment explanation
Indices: 115149--115326 Score: 173
Period size: 64 Copynumber: 2.8 Consensus size: 64
115139 GGGACACTTA
**
115149 GTGCATCGGTGCACT-AAGGATGCATCGATGCATAAAATGCATTCGATGTTTGAAAAATAGCCTG
1 GTGCATCAATGCACTGAAGG-TGCATCGATGCATAAAATGCATTCGATGTTTGAAAAATAGCCTG
* *** * ** *
115213 GTGCATCAATGCATTGCTTGTGCATCGATGCATCAAATGCATTCGATGTTTG-AAAATATTCAG
1 GTGCATCAATGCACTGAAGGTGCATCGATGCATAAAATGCATTCGATGTTTGAAAAATAGCCTG
* * * * *
115276 AATGCATCGATGCA-TGGAGAGTGCATCGGTGCATGAAATGCATTCGATGTT
1 -GTGCATCAATGCACTGAAG-GTGCATCGATGCATAAAATGCATTCGATGTT
115327 CAATTAAATC
Statistics
Matches: 94, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
63 10 0.11
64 83 0.88
65 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (64 bp):
GTGCATCAATGCACTGAAGGTGCATCGATGCATAAAATGCATTCGATGTTTGAAAAATAGCCTG
Found at i:123897 original size:19 final size:19
Alignment explanation
Indices: 123873--123909 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
123863 GAAAATATTC
123873 AGAGTGCATCGATGCATGG
1 AGAGTGCATCGATGCATGG
*
123892 AGAGTGCATCGGTGCATG
1 AGAGTGCATCGATGCATG
123910 AAATGCATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.24, C:0.16, G:0.38, T:0.22
Consensus pattern (19 bp):
AGAGTGCATCGATGCATGG
Found at i:123944 original size:64 final size:63
Alignment explanation
Indices: 123768--123953 Score: 187
Period size: 64 Copynumber: 2.9 Consensus size: 63
123758 GCACTAAGGA
* * * ** * * ***
123768 TGCATAGATGCATAAAATGCATTCGATGTTTGAAAAATAGCCTGGTGCATCAATGCATGGCTTG
1 TGCATCGATGCATCAAATGCATTCGATG-TTCAAAAATATTCAGGTGCATCGATGCATGGAGAG
**
123832 TGCATCGATGCATCAAATGCATTCGATGTTTGAAAATATTCAGAGTGCATCGATGCATGGAGAG
1 TGCATCGATGCATCAAATGCATTCGATGTTCAAAAATATTCAG-GTGCATCGATGCATGGAGAG
* *
123896 TGCATCGGTGCATGAAATGCATTCGATGTTCAATTAAATCA-T-AGGTGCATCGATGCAT
1 TGCATCGATGCATCAAATGCATTCGATGTTCAA--AAAT-ATTCAGGTGCATCGATGCAT
123954 ATATTGATGC
Statistics
Matches: 103, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
63 10 0.10
64 85 0.83
65 2 0.02
66 5 0.05
67 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.30
Consensus pattern (63 bp):
TGCATCGATGCATCAAATGCATTCGATGTTCAAAAATATTCAGGTGCATCGATGCATGGAGAG
Found at i:131840 original size:19 final size:19
Alignment explanation
Indices: 131816--131852 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
131806 GAAAATATTC
131816 AGAGTGCATCGATGCATGG
1 AGAGTGCATCGATGCATGG
*
131835 AGAGTGCATCGGTGCATG
1 AGAGTGCATCGATGCATG
131853 AAATGCATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.24, C:0.16, G:0.38, T:0.22
Consensus pattern (19 bp):
AGAGTGCATCGATGCATGG
Found at i:131887 original size:64 final size:63
Alignment explanation
Indices: 131711--131896 Score: 187
Period size: 64 Copynumber: 2.9 Consensus size: 63
131701 GCACTAAGGA
* * * ** * * ***
131711 TGCATAGATGCATAAAATGCATTCGATGTTTGAAAAATAGCCTGGTGCATCAATGCATGGCTTG
1 TGCATCGATGCATCAAATGCATTCGATG-TTCAAAAATATTCAGGTGCATCGATGCATGGAGAG
**
131775 TGCATCGATGCATCAAATGCATTCGATGTTTGAAAATATTCAGAGTGCATCGATGCATGGAGAG
1 TGCATCGATGCATCAAATGCATTCGATGTTCAAAAATATTCAG-GTGCATCGATGCATGGAGAG
* *
131839 TGCATCGGTGCATGAAATGCATTCGATGTTCAATTAAATCA-T-AGGTGCATCGATGCAT
1 TGCATCGATGCATCAAATGCATTCGATGTTCAA--AAAT-ATTCAGGTGCATCGATGCAT
131897 ATATTGATGC
Statistics
Matches: 103, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
63 10 0.10
64 85 0.83
65 2 0.02
66 5 0.05
67 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.30
Consensus pattern (63 bp):
TGCATCGATGCATCAAATGCATTCGATGTTCAAAAATATTCAGGTGCATCGATGCATGGAGAG
Found at i:136090 original size:22 final size:22
Alignment explanation
Indices: 136065--136110 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
136055 ATTATTTTAT
*
136065 ATTAACGAATTAAAAAATATAA
1 ATTAACAAATTAAAAAATATAA
**
136087 ATTAACAAATTAATGAATATAA
1 ATTAACAAATTAAAAAATATAA
136109 AT
1 AT
136111 ATTAATTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.61, C:0.04, G:0.04, T:0.30
Consensus pattern (22 bp):
ATTAACAAATTAAAAAATATAA
Found at i:147687 original size:174 final size:174
Alignment explanation
Indices: 137348--147578 Score: 14842
Period size: 174 Copynumber: 58.9 Consensus size: 174
137338 AAAACAACAG
* * * * * * *
137348 TCTGTTATAAATCAAATTCCTATTCTCTATTATCCAAAGAAAGTTGGTAAGTTTTAAAAACATAT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
*
137413 AGTAATGGATAAAACTTTT-TATACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCT
66 AGTAATGGATAAATCTTTTGT-TACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCT
* * * *
137477 CTCTTGAAAAAAGATGGCCAGGAAACGGAGTATGCAGGAAAAGAG
130 CTCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
* * * * * * *
137522 TCTGTTATAAATCAAATTCCTATTCTCTATTATCCAAAGAAAGTTGGTAAGTTTTAAAAACATAT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
*
137587 AGTAATGGATAAAACTTTT-TATACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCT
66 AGTAATGGATAAATCTTTTGT-TACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCT
* * * *
137651 CTCTTGAAAAAA-ATGGCCAGGAAACGGAGTATGCAGGAAAAGAG
130 CTCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
* * * * * * * *
137695 TATGTTATAAATCAAATTCCTATTCTCTATTATCCAAAGAAAGTTGGTAAGTTTTAAAAACATAT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* *
137760 AGTAATGGATAAAACTTTT-TATACAAATTTAAATTTGGATCGGTCTATAATTCTTGTATTTTCT
66 AGTAATGGATAAATCTTTTGT-TACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCT
* * *
137824 CTCTTGAAAAAAGATGGTCAAGAAACGGGGAATGCAGGAAAAGAA
130 CTCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
* * *
137869 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACAAGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * *
137934 ACTAATGGATAAATCTTTTGTTACAAATTTAAATTTTGATCGGTTTATAATTATTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
*
137999 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAAGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
* * *
138043 TCTGTTATAAACCAAATTCCCATTTTCTACTATCCGAAGAGAGTTGGTAAGTTACAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* *
138108 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGTTCGGTCTATAATTCTTTTATTTTTTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* *
138173 TCTTGAAAAAAGATGGTCAGGAAACGGAGTATGCATGG-AAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCA-GGAAAAGAA
* * * *
138217 TATGTTATAAACCAAATTCCTATTCTT-TACTATCC-AAGGAAAGTTAGTAAGTTTGAGTAACAT
1 TCTGTTATAAACCAAATTCCTATT-TTCTACTATCCGAA-GAAAGTTGGTAAGTTTCAATAACAT
* * * *
138280 GTAGTAATGGATAAATCTTTTGTTACAATTTTAAATTTGGACCGGCCTAAAATTCTTTTATTTTC
64 GTAGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTC
* * * * *
138345 TCTTTTGAAAAAAGATGGTAAGTAAACGGAGAATGCATGAAAAGAA
129 TCTCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
* * *
138391 TCTGTTATAAACAAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * * *
138456 ACTAATGGATAAATCTTTTCTTACAAATTTGAATTTTGATCGGTTTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
**
138521 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCCTGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
** *
138565 TCTGTTATAAACCAAATTAATATTTGT-TACTATCCGAAGAAAGTTGGTACGTTTCAATAACATG
1 TCTGTTATAAACCAAATTCCTATTT-TCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATG
* * * *
138629 TAGTAATGGATAAATCGTTTGTTACAAATTTGAATTTTGATCGGTTTATAATTCTTTTATTTTCT
65 TAGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCT
138694 CTCTT-AAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAA-ATA
130 CTCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGA-A
** * *
138738 TCTGTTATAAACCAAATTAATATTTTCTACTATCCGAAGAAAGTTGGTACGTTTGAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
*
138803 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTAGATCGGTCTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * *
138868 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGTATGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
*
138912 TATGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* *
138977 AGTAATGGATAAATCTTTTGTTACACATTTAAATTTGGATCGGTCTATAATTC-TTTATTTTTTT
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTA-TTTTCT
* * * *
139041 CTCCT-AAAAAA-ATGGTCAGGAAACGGAGTATGCAAGAAAAGAA
130 CTCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
* * * * *
139084 TATGTTATAAACCAAATTCATATTCTT-TACTATCCAAAGAAAGTTGGTAAGTTTGAGTAACATG
1 TCTGTTATAAACCAAATTCCTATT-TTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATG
* * * *
139148 TAGTAATGGATAAATCTTTTGTTACAACTTCAAATTTGTATCGGTCTAAAATTCTTTTATTTTCT
65 TAGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCT
* * *
139213 CTCTTGAAAAAAGATGGTCAAGAAAAAGAGAATGCAGGAAAATAA
130 CTCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
* * * * *
139258 TATGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAATTGGTAAGCTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * * *
139323 ACTAATAGATAAATCTTTTGTTACAAATTTGAATTTTGATCGGTTTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
*
139388 TCTTGAAAAAAGATGGTTAGGAAACAGAGAATGCAGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
** *
139432 TCTGTTATAAACCAAATTCAAATTTTCTACTATCCGAATAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* ** *
139497 AGTAATGGATAAATCTTTTGTTACAAATTTGAATTTTTATCGGTTTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
139562 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
** *
139606 TCTGTTATAAACCAAATTAATATTTTCTACTATCCGAAGAAAGTTGGTATGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
*
139671 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTAGATCGGTCTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * *
139736 TCTTTAAAAAAGATGGTTAGGAAAAAGAGAATGCAGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
* ** *
139780 TCTATTATAAACCAAATTCAAATTTTCTACTATCCGAATAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * *
139845 AGTATTGAATAAATATTTTGTTTCAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* *
139910 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAATAA
131 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
* * *
139954 TATGTTCTAAACCAAATTCCTATTTTCTACTATCCTAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
140019 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
*
140084 TCTTGAAAAAAGATGGTCAGAAAACAGAGAATG-ATGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCA-GGAAAAGAA
* * * * * *
140128 TATGTTATAAACTAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTGAGTAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* * *
140193 AGTAATGGATAAATCGTTTGTTACAATTTTAAATTTGGATCGGTCTAAAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * *
140258 TTTTCAAAAAAGATGGTCAGGAAAC-GAAGAATGCATGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACAG-AGAATGCAGGAAAAGAA
* * * *
140302 TCTATTATAAACCAAATTCATATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* ** * * * * *
140367 ACTAATAAATAAATCTTTTGTTAAAAATTTGATTTTTGATCGGTTTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* *
140432 TCTTGAAAAAAGATGGTTAGGAAAAAGAGAATGCAGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
** * *
140476 TCTGTTATAAACCAAATTCAAATTTTCTAGTATCCGAATAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * * *
140541 AGTATTGAATAAATATTTTCTTTCAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
** *
140606 TCTTGAAAAAAGATGGTCAGGAAATGGAGAATGCAGGAAAATAA
131 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
* * * *
140650 TATGTTCTAATCCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTACGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* *
140715 AGTAAAGGATAAATCTTTTGTTACAAATTTAAATTAGGATCGGTCTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * *
140780 TCATGAAAAAATATGGTCAGGAAACAGAGAATGCAAGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
* * *
140824 TCTGTTATAAACCAAATTCCTATTATCTACTTTCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* * *
140889 ACTAATGGATAAATCTTTTGTTACAAATTTAAATTTTGATCGGTTTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
*
140954 TCTTGAAAAAAGATGGTCAGGAAAC-GAAGAATGCAAGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACAG-AGAATGCAGGAAAAGAA
* * * *
140998 TCTGTTATAAACCAAATTCCTATTTTTTACTGTCCGACGAAAGTTGGTAAGTCTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* *
141063 AGTAATGGATAAATCCTTTGTTAAAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
*
141128 TCTTGAAAAAAGATGGTCAGAAAACAGAGAATG-ATGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCA-GGAAAAGAA
* * * * * *
141172 TATATTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTGAGTAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
*
141237 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTAAAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * * *
141302 TCTTGAAAAAA-ATGGCCAGGAAACGGAGTATGCAGGAAAAGAG
131 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
* * * * * * * *
141345 TATGTTATAAATCAAATTCCTATTCTCTATTATCCAAAGAAAGTTGGTAAGTTTTAAAAACATAT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* *
141410 AGTAATGGATAAAACTTTT-TATACAAATTTAAATTTGGATCGGTCTATAATTCTTGTATTTTCT
66 AGTAATGGATAAATCTTTTGT-TACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCT
* * *
141474 CTCTTGAAAAAAGATGGTCAAGAAACGGGGAATGCAGGAAAAGAA
130 CTCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
* * *
141519 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACAAGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * *
141584 ACTAATGGATAAATCTTTTGTTACAAATTTAAATTTTGATCGGTTTATAATTATTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
*
141649 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAAGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
* * *
141693 TCTGTTATAAACCAAATTCCCATTTTCTACTATCCGAAGAGAGTTGGTAAGTTACAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* *
141758 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGTTCGGTCTATAATTCTTTTATTTTTTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* *
141823 TCTTGAAAAAAGATGGTCAGGAAACGGAGTATGCATGG-AAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCA-GGAAAAGAA
* * *
141867 TATGTTATAAACCAAATTCCTATTCTT-TACTATCC-AAGGAAAGTTGGTAAGTTTGAGTAACAT
1 TCTGTTATAAACCAAATTCCTATT-TTCTACTATCCGAA-GAAAGTTGGTAAGTTTCAATAACAT
* * *
141930 GTAGTAATGGATAAATCTTTTGTTACAATTTTAAATTTGTATCGGTCTAAAATTCTTTTATTTTC
64 GTAGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTC
* * *
141995 TCTCTTGAAAAAAGATGGTCAAGAAAAAGAGAATGCAGGAAAATAA
129 TCTCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
* * * * *
142041 TATGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAATTGGTAAGCTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * * *
142106 ACTAATAGATAAATCTTTTGTTACAAATTTGAATTTTGATCGGTTTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
*
142171 TCTTGAAAAAAGATGGTTAGGAAACAGAGAATGCAGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
** *
142215 TCTGTTATAAACCAAATTCAAATTTTCTACTATCCGAATAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* ** *
142280 AGTAATGGATAAATCTTTTGTTACAAATTTGAATTTTTATCGGTTTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
142345 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
** *
142389 TCTGTTATAAACCAAATTAATATTTTCTACTATCCGAAGAAAGTTGGTATGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
*
142454 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTAGATCGGTCTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * * *
142519 TTTTTAAAAAAGATGGTTAGGAAAAAGAGAATGCAGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
* ** *
142563 TCTATTATAAACCAAATTCAAATTTTCTACTATCCGAATAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * * *
142628 AGTATTGAATAAATATTTTGTTTCAAATTTAAATTTGGATCTGTCTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* *
142693 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAATAA
131 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
* *
142737 TATGTTCTAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
142802 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
*
142867 TCTTGAAAAAAGATGGTCAGAAAACAGAGAATG-ATGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCA-GGAAAAGAA
* * * * * *
142911 TATGTTATAAACTAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTGAGTAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* *
142976 AGTAATGGATAAATCTTTTGTTACAATTTTAAATTTGGATCGGTCTAAAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * *
143041 TTTTCAAAAAAGATGGTCAGGAAAC-GAAGAATGCATGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACAG-AGAATGCAGGAAAAGAA
* * * *
143085 TCTATTATAAACCAAATTCATATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* ** * * * * *
143150 ACTAATAAATAAATCTTTTGTTAAAAATTTGATTTTTGATCGGTTTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * *
143215 TCTTGAAAAAAGATGGTTAGGAAAAATAGAATGCAGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
** *
143259 TCTGTTATAAACCAAATTCAAATTTTCTACTATCCGAATAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * * *
143324 AGTATTGAATAAATATTTTCTTTCAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
** *
143389 TCTTGAAAAAAGATGGTCAGGAAATGGAGAATGCAGGAAAATAA
131 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
* * * *
143433 TATGTTCTAATCCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTACGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* *
143498 AGTAAAGGATAAATCTTTTGTTACAAATTTAAATTAGGATCGGTCTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * *
143563 TCATGAAAAAATATGGTCAGGAAACAGAGAATGCAAGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
* * *
143607 TCTGTTATAAACCAAATTCCTATTATCTACTTTCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* * *
143672 ACTAATGGATAAATCTTTTGTTACAAATTTAAATTTTGATCGGTTTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
*
143737 TCTTGAAAAAAGATGGTCAGGAAAC-GAAGAATGCAAGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACAG-AGAATGCAGGAAAAGAA
* * * *
143781 TCTGTTATAAACCAAATTCCTATTTTTTACTGTCCGACGAAAGTTGGTAAGTCTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* *
143846 AGTAATGGATAAATCCTTTGTTAAAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
*
143911 TCTTGAAAAAAGATGGTCAGAAAACAGAGAATG-ATGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCA-GGAAAAGAA
* * * * * * *
143955 TATATTAAAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTGAGTAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* *
144020 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTAAAATTCTTATATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* *
144085 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAAGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
* * * * *
144129 TATGTTATAAACCAAATTCCAATTCTCTACTGTCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * *
144194 ACTAATGGATAAATCTTTTGTTACAAATTTAAATTTTGTTCGGTCTATAATTCTTTTATTTTTTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * * *
144259 TCTTGAAAAAAAGATGGCCAGGAAACGGAGTATGCATGAAAAGAA
131 TCTTG-AAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
* * * * *
144304 TATGTTATAAACCAAATTCCTA-TTCCTTACTATCCAAAGAAAGTTGGTAAGTTTGAGTAACATG
1 TCTGTTATAAACCAAATTCCTATTTTC-TACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATG
* * *
144368 TAGTAATGGATAAATCTTTTGTTACAATTTTAAATTTGGACCGGTCTAAAATTCTTTTATTTTCT
65 TAGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCT
* * ** * * *
144433 CTTTTGAAAAAAAATGGAAAGTAAACGGAGAATGCATGAAAAGAA
130 CTCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
* * * * *
144478 TCTGTTATAAACAAAATACCTATTCTCTACTATCCAAAGAAATTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * * *
144543 ACTAATGGATAAATCTTTTCTTACAAATTTGAATTTTGATCGGTTTATAATTC-TTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
*
144607 TCTTGAAAAAAGATGGTTAGGAAACAGAGAATGCAGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
** *
144651 TCTGTTATAAACCAAATTAATATTTGT-TACTATCCGAAGAAAGTTGGTATGTTTCAATAACATG
1 TCTGTTATAAACCAAATTCCTATTT-TCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATG
*
144715 TAGTAATGGATAAATCTTTTGTTACAAATTTAAATTTAGATCGGTCTATAATTCTTTTATTTTCT
65 TAGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCT
*
144780 CTCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAAAA
130 CTCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
** *
144825 TCTGTTATAAACCAAATTAATATTTTCTACTATCCGAAGAAAGTTGGTACGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
*
144890 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTAGATCGGTCTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * *
144955 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGTATGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
* *
144999 TATGTTATAAAACAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* *
145064 AGTAATGGATAAATCTTTTGTTACACATTTAAATTTGGATCGGTCTATAATTC-TTTATTTTTTT
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTA-TTTTCT
* ** * *
145128 CTCCT-AAAAAA-ATGGT-ATGGAAATGGAGTATGCAAGAAAAGAA
130 CTCTTGAAAAAAGATGGTCA-GGAAACAGAGAATGCAGGAAAAGAA
* * * * * * *
145171 TATGTTATAAACCAAATTCATATTCTT-TACTATCCCAAAAAATTTGGTAAGTTTGAGTAACATG
1 TCTGTTATAAACCAAATTCCTATT-TTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATG
* * *
145235 TAGTAATGGATAAATCTTTTGTTACAACTTTAAATTTGTATCGGTCTAAAATTCTTTTATTTTCT
65 TAGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCT
* *
145300 CTCTTGAAAAAAGATGGTCAAGAAAAAGAGAATGCAGGAAAAGAA
130 CTCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
* * * *
145345 TATGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAATTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * * *
145410 ACTAATAGATAAATCTTTTGTTACAAATTTGAATTTTGATCGGTTTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* *
145475 TCTTGAAAAAAGATGGTTAGGAAACAGAGAATGTAGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
* * *
145519 TCTGTTATAAACCAAATTCCAATTTTCTACTATCCGAATAAAGTTTGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* * *
145584 AGTAATGGATAAATCTTTTGTTACAAATTTGAATTTTGATCGGTTTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
145649 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
** *
145693 TCTGTTATAAACCAAATTAATATTTTCTACTATCCGAAGAAAGTTGGTACGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
*
145758 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTAGATCGGTCTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * *
145823 TCTTGAAAAAAGATGGTTAGGAAAAAGAGAGTGCAGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
** *
145867 TCTGTTATAAACCAAATTCAAATTTTCTACTATCCGAATAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * *
145932 AGTATTGAATAAATATTTTGTTTCAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * *
145997 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATACAGGAAAATAA
131 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
* *
146041 TATGTTCTAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
*
146106 AGTAATGGATAATTCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTC-TTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* *
146170 TCTTGAAAAAAGATGGTCAGAAAACATAGAATG-ATGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCA-GGAAAAGAA
* * * * * * *
146214 TATTTTATAAACTAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTGAGTAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* *
146279 AGTAATGGATAAATCTTTTGTTACAATTTTAAATTTGGATCGGTCTAAAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * *
146344 TTTTCAAAAAAGATGGTCAGGAAAC-GAAGAATGCATGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACAG-AGAATGCAGGAAAAGAA
* * *
146388 TCTATTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* ** * * * * *
146453 ACTAATAAATAAATCTTTTCTTACAAATTTGATTTTTGATCGGTTTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* *
146518 TCCTGAAAAAAGATGGTTAGGAGAA-AGAGAATGCAGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGA-AACAGAGAATGCAGGAAAAGAA
** *
146562 TCTGTTATAAACCAAATTCAAATTTTCTACTATCCGAATAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * * *
146627 AGTATTGAATAAATATTTTCTTTCAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* ** * * *
146692 TCTTG--AAAAGATGGTCTGGAAATGGAGAATGTAGAAAAATAA
131 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
* *
146734 TATGTTCTAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * *
146799 AGTAATGGATAAATATTTTGTTTCAAATTTAAATTAGGATCGGTCTATAATTCTTTTATTTTCAC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* *
146864 TCTTGAAAAAATATGGTCAGGAAACAGAGAATGCAAGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
* *
146908 TCTGTTATAAACCAAATTCCTATTATCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * *
146973 ACTAATGGATAAATATTTTGTTACAAATTTAAATTTTGATCGGTTTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
*
147038 TCTTGAAAAAAGATGGTCAGGAAAC-GAAGAATGCAAGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACAG-AGAATGCAGGAAAAGAA
* * * *
147082 TCTGTTATAAACCAAATTCCTATTTTTTACTGTACGACGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * *
147147 AGTAATGGATAAATCTTTTGTTACAAATTTGAATTTTGATCGGTTTATAATTATTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
147212 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
** *
147256 TCTGTTATAAA-CAAATTAATATTTTCTACTATCCGAAGAAAGTTGGTACGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* *
147320 AGTAATGGATAAATCTTTTGTTAAAAATTTAAATTTAGATCGGTCTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * * *
147385 TCTTGAAAAAAGATGGTTAGGAAAAAGAGAGTGTAGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
** * * *
147429 TCTGTTATAAACCAAATTCAAATTTTCTACTATCTGAATAAAGTTGGTAAGTTTCAATAACCTGT
1 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
* * *
147494 ACTAATGGATAAATCTTTTGTTACAAATTTAAATTTTGATCGGTTTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
*
147559 TCTTGAAAAAAGATGATCAG
131 TCTTGAAAAAAGATGGTCAG
147579 AAATTAGGGA
Statistics
Matches: 9109, Mismatches: 878, Indels: 140
0.90 0.09 0.01
Matches are distributed among these distances:
171 3 0.00
172 440 0.05
173 1016 0.11
174 7468 0.82
175 182 0.02
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36
Consensus pattern (174 bp):
TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCAGGAAAAGAA
Found at i:150352 original size:2 final size:2
Alignment explanation
Indices: 150345--150392 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
150335 TATGTGTCTA
150345 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
150387 AT AT AT
1 AT AT AT
150393 TGGTATTATA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:153170 original size:14 final size:14
Alignment explanation
Indices: 153153--153182 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
153143 AAAGTGCAAT
153153 AATTAAAGTACTGA
1 AATTAAAGTACTGA
*
153167 AATTAAATTACTGA
1 AATTAAAGTACTGA
153181 AA
1 AA
153183 AATAAAGGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.53, C:0.07, G:0.10, T:0.30
Consensus pattern (14 bp):
AATTAAAGTACTGA
Found at i:155067 original size:22 final size:23
Alignment explanation
Indices: 155031--155083 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
155021 AATAAAATAA
*
155031 AAAGAAGAAAAT-AAAGAATATT
1 AAAGAAGAAAATAAAAGAAGATT
155053 AAAG-AGAAAAGTAAAAGAAGATT
1 AAAGAAGAAAA-TAAAAGAAGATT
155076 -AAGAAGAA
1 AAAGAAGAA
155084 GATTTAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
21 6 0.22
22 8 0.30
23 13 0.48
ACGTcount: A:0.68, C:0.00, G:0.19, T:0.13
Consensus pattern (23 bp):
AAAGAAGAAAATAAAAGAAGATT
Found at i:162370 original size:12 final size:11
Alignment explanation
Indices: 162356--162389 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
162346 TTTGTACTGT
162356 TTTTTATTTTA
1 TTTTTATTTTA
162367 TTTTTATTATTA
1 TTTTTATT-TTA
*
162379 TTGTTATTTTA
1 TTTTTATTTTA
162390 GTATTTTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 11 0.52
12 10 0.48
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (11 bp):
TTTTTATTTTA
Found at i:162408 original size:23 final size:21
Alignment explanation
Indices: 162357--162409 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 21
162347 TTGTACTGTT
162357 TTTTATTTTATTTTTATTATTA
1 TTTTATTTTATTTTTA-TATTA
162379 TTGTTATTTTAGTATTTTA-ATTA
1 TT-TTATTTTA-T-TTTTATATTA
162402 TGTTTATT
1 T-TTTATT
162410 AATCGTTTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
22 2 0.07
23 18 0.67
24 2 0.07
25 5 0.19
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.72
Consensus pattern (21 bp):
TTTTATTTTATTTTTATATTA
Found at i:165453 original size:26 final size:26
Alignment explanation
Indices: 165417--165469 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
165407 ATAGGATGAT
165417 GTCTCGAAGTCCATGGAATGAAGATA
1 GTCTCGAAGTCCATGGAATGAAGATA
*
165443 GTCTCGAAGTCGATGGAATGAAGATA
1 GTCTCGAAGTCCATGGAATGAAGATA
165469 G
1 G
165470 GTAACAACTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.34, C:0.13, G:0.30, T:0.23
Consensus pattern (26 bp):
GTCTCGAAGTCCATGGAATGAAGATA
Found at i:169448 original size:24 final size:24
Alignment explanation
Indices: 169416--169486 Score: 79
Period size: 24 Copynumber: 3.0 Consensus size: 24
169406 ACCTGACCTA
169416 GATTCTATTCTGATTTATGATATG
1 GATTCTATTCTGATTTATGATATG
* * * *
169440 GATTCTATTCTGATATCTTATCTG
1 GATTCTATTCTGATTTATGATATG
* * *
169464 AATTCTGTTTTGATTTATGATAT
1 GATTCTATTCTGATTTATGATAT
169487 ATCCATTTAT
Statistics
Matches: 36, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.24, C:0.10, G:0.14, T:0.52
Consensus pattern (24 bp):
GATTCTATTCTGATTTATGATATG
Found at i:170548 original size:14 final size:14
Alignment explanation
Indices: 170529--170560 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
170519 ATGCCCATAT
170529 TTAAATTTCCAAAC
1 TTAAATTTCCAAAC
*
170543 TTAAATTTCCAAAT
1 TTAAATTTCCAAAC
170557 TTAA
1 TTAA
170561 TTAACTTGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.44, C:0.16, G:0.00, T:0.41
Consensus pattern (14 bp):
TTAAATTTCCAAAC
Found at i:170835 original size:3 final size:3
Alignment explanation
Indices: 170822--170885 Score: 87
Period size: 3 Copynumber: 22.0 Consensus size: 3
170812 TCAACCATTA
*
170822 ATT ACT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-T ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *
170869 A-T ATT ATA AAT ATT ATT
1 ATT ATT ATT ATT ATT ATT
170886 TATGAGCCCA
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
2 4 0.08
3 49 0.92
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:174162 original size:29 final size:29
Alignment explanation
Indices: 174119--174175 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
174109 GAAAAAGATT
174119 AAATACTTTAAGTACCTATTTTGACCAAC
1 AAATACTTTAAGTACCTATTTTGACCAAC
* * *
174148 AAATATTTTAGGTACTTATTTTGACCAA
1 AAATACTTTAAGTACCTATTTTGACCAA
174176 AAGGATAAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.37, C:0.16, G:0.09, T:0.39
Consensus pattern (29 bp):
AAATACTTTAAGTACCTATTTTGACCAAC
Found at i:175945 original size:16 final size:16
Alignment explanation
Indices: 175924--175964 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
175914 TGAAACTCGA
*
175924 CTCGAACTTGAAAAGG
1 CTCGAACTCGAAAAGG
175940 CTCGAACTCGAAAAGG
1 CTCGAACTCGAAAAGG
175956 CTCGAACTC
1 CTCGAACTC
175965 ATAAAAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.34, C:0.27, G:0.22, T:0.17
Consensus pattern (16 bp):
CTCGAACTCGAAAAGG
Found at i:180555 original size:30 final size:30
Alignment explanation
Indices: 180500--180603 Score: 163
Period size: 31 Copynumber: 3.4 Consensus size: 30
180490 TTCAACGTTC
*
180500 AAGTGACCAAAATTTAAGAAAATGATAATGT
1 AAGTGACCAAAATTTAA-TAAATGATAATGT
* *
180531 AAGTGATCAAAATTTAATAAATGATAACGT
1 AAGTGACCAAAATTTAATAAATGATAATGT
180561 AAGTGACCAAAATTTAATAAAATGATAATGT
1 AAGTGACCAAAATTTAAT-AAATGATAATGT
180592 AAGTGACCAAAA
1 AAGTGACCAAAA
180604 CTTGTTAAAC
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
30 28 0.42
31 39 0.58
ACGTcount: A:0.52, C:0.08, G:0.14, T:0.26
Consensus pattern (30 bp):
AAGTGACCAAAATTTAATAAATGATAATGT
Found at i:182945 original size:3 final size:3
Alignment explanation
Indices: 182937--182980 Score: 61
Period size: 3 Copynumber: 14.3 Consensus size: 3
182927 AACCATTAAA
* *
182937 TAT TAT TAT TAT TAT TAT AAAA TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT T
182981 TACATATAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
3 35 0.97
4 1 0.03
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:182959 original size:22 final size:22
Alignment explanation
Indices: 182934--182976 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
182924 TTCAACCATT
182934 AAATATTATTATTATTATTATA
1 AAATATTATTATTATTATTATA
182956 AAATATTATTATTATTATTAT
1 AAATATTATTATTATTATTAT
182977 TATTTACATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (22 bp):
AAATATTATTATTATTATTATA
Found at i:183630 original size:3 final size:3
Alignment explanation
Indices: 183622--183671 Score: 73
Period size: 3 Copynumber: 16.3 Consensus size: 3
183612 GACCATTAAA
* *
183622 TAT TAT TAT TAT TAT TAT AAAA TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT
183668 TAT T
1 TAT T
183672 TACATGCAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
3 41 0.98
4 1 0.02
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:183644 original size:22 final size:22
Alignment explanation
Indices: 183619--183661 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
183609 TTCGACCATT
183619 AAATATTATTATTATTATTATA
1 AAATATTATTATTATTATTATA
183641 AAATATTATTATTATTATTAT
1 AAATATTATTATTATTATTAT
183662 TATTATTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (22 bp):
AAATATTATTATTATTATTATA
Found at i:184118 original size:657 final size:655
Alignment explanation
Indices: 183069--184249 Score: 1900
Period size: 657 Copynumber: 1.8 Consensus size: 655
183059 ATATTTTTGG
*
183069 TTTGAATTTCAAAAAATGATAAGACACTTATTGTTGGTGTAGCTTTTGAGGTGATGACAACACCA
1 TTTGAATTTCAAAAAAGGATAAGACACTTATTGTTGGTGTAGCTTTTGAGGTGATGACAACACCA
* *
183134 GTCCATGTAAAGAAACACAAAATGATCTCATCCCTTGATTAGTTTCATCCAAGAGCCATAATCTC
66 ATCCATGTAAAGAAACAAAAAATGATCTCATCCCTTGATTAGTTTCATCCAAGAGCCATAATCTC
* * *
183199 TTCAATCCTTGTCAAACAAAGACAACCCATGTGAGCCATTGATGGAGGGTTAGATCCAAGGGCTA
131 TTCAATCATTGTCAAACAAACACAACCCATGTGAGCCATTGATGAAGGGTTAGATCCAAGGGCTA
* * *
183264 GGAACTTTCCACGTCACCCATCCATGTGAAGAAGCACAAATGAATCTAAACCCGCCTTAATCAAA
196 GGAACTTACCAAGTCACCCATCCAAGTGAAGAAGCACAAATGAATCTAAACCCGCCTTAATCAAA
* *
183329 CATGCCCATATTTAAATTTCCAAATTTAATTAACTTGTCAAGCAATATCACATTTGAATTCTTTG
261 CATGCCCATATTTAAATTTCCAAATTTAATTAACTTGTCAAACAAGATCACATTTGAATTCTTTG
* *
183394 ATTTCTTTATTTGGAAAAAATGTCAAGACTTTAGTTAATTTTTAGTTAAAATGTTTATATCTGAT
326 ATTTCTTTATTTGGAAAAAATGTCAAGACTTTAGTTAATTTTTAATTAAAATGTCTATATCTGAT
* * * * *
183459 CAATTTTATGATGTATGTTATATATTGTTTAAGAATTGTTTGGGAAACTATTAGTTATAATTTAA
391 CAATTTTATGATATATGTCATATACTGTATAAGAATTGTTTGGAAAACTATTAGTTATAATTTAA
*
183524 GTAGTAGGTGTTAGTTGCTATTATTTTAACTTTATAAAAAAGGTTCTTGACTTGTGAATTGAGTT
456 GTAGTAGGTGTTAGTTGCTATTATTTTAACTTTAT-AAAAAGGTTCTTGACTTGTGAATTAAGTT
*
183589 GGATTTTATAATCACCATTCTTCGACCATTAAATATTATTATTATTATTATAAAATATTATTATT
520 AGATTTTATAATCACCATTCTTCGACCATTAAATATTATTATTATTATTATAAAATATTATTATT
183654 ATTATTATTATTATTATTTACATGCAAAACCGAGCCCAATGTTCAAACCCTAGTGTATTATTTAC
585 ATTATTATTATTATTATTTACATGCAAAACCGAGCCCAATGTTCAAACCCTAGTGTATTATTTAC
183719 AAGTCA
650 AAGTCA
* * * *
183725 TTTGAATTTCAAAAAAGGATAAGTCATTTATTGTTGGTGTAGCTTTTGAGGTGATGACATCATCA
1 TTTGAATTTCAAAAAAGGATAAGACACTTATTGTTGGTGTAGCTTTTGAGGTGATGACAACACCA
* * * * * *
183790 ATCCATGTAAAGAAACAAAAAATGATTTCATCCCTTGATTAGCTTTTATTCAAGGGTCATCATCT
66 ATCCATGTAAAGAAACAAAAAATGATCTCATCCCTTGATTAG-TTTCATCCAAGAGCCATAATCT
183855 CTTCAATCATTGTCAAACAAACACAACCCATGTGAGCCATTGATGAAGGGTTAGATCCAAGGG-T
130 CTTCAATCATTGTCAAACAAACACAACCCATGTGAGCCATTGATGAAGGGTTAGATCCAAGGGCT
* * *
183919 AAGGAGCTTACCAAGTCACCCATCCAAGTGTATAAGCACAAATGAATCTAAACCCGCCTTAATCA
195 -AGGAACTTACCAAGTCACCCATCCAAGTGAAGAAGCACAAATGAATCTAAACCCGCCTTAATC-
* * * *
183984 AAACATGCCCATATTTAAATTTTCAAATTTAATTAACTTGTCAAACCAGAT-AGCATTTGGATTT
258 AAACATGCCCATATTTAAATTTCCAAATTTAATTAACTTGTCAAACAAGATCA-CATTTGAATTC
* * *
184048 TTTGATTTCTTTATTTGG-AAAAATGTCAAGATTTTTGTTAATTTTTAATTAAAATGTCTATATT
322 TTTGATTTCTTTATTTGGAAAAAATGTCAAGACTTTAGTTAATTTTTAATTAAAATGTCTATATC
184112 TGATCAATTTTATGATATATGTCATATACTGTATAAGAATTGTTTGGAAAACTATTAGTTATAAT
387 TGATCAATTTTATGATATATGTCATATACTGTATAAGAATTGTTTGGAAAACTATTAGTTATAAT
* * * *
184177 TTAAGTATTAGGTGTTAGTTGTTGTTATTTTAACTTTATAAAAAGTTTCTTGACTTGTGAATTAA
452 TTAAGTAGTAGGTGTTAGTTGCTATTATTTTAACTTTATAAAAAGGTTCTTGACTTGTGAATTAA
184242 GTTAGATT
517 GTTAGATT
184250 CGATATCCCA
Statistics
Matches: 477, Mismatches: 44, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
656 131 0.27
657 272 0.57
658 74 0.16
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.37
Consensus pattern (655 bp):
TTTGAATTTCAAAAAAGGATAAGACACTTATTGTTGGTGTAGCTTTTGAGGTGATGACAACACCA
ATCCATGTAAAGAAACAAAAAATGATCTCATCCCTTGATTAGTTTCATCCAAGAGCCATAATCTC
TTCAATCATTGTCAAACAAACACAACCCATGTGAGCCATTGATGAAGGGTTAGATCCAAGGGCTA
GGAACTTACCAAGTCACCCATCCAAGTGAAGAAGCACAAATGAATCTAAACCCGCCTTAATCAAA
CATGCCCATATTTAAATTTCCAAATTTAATTAACTTGTCAAACAAGATCACATTTGAATTCTTTG
ATTTCTTTATTTGGAAAAAATGTCAAGACTTTAGTTAATTTTTAATTAAAATGTCTATATCTGAT
CAATTTTATGATATATGTCATATACTGTATAAGAATTGTTTGGAAAACTATTAGTTATAATTTAA
GTAGTAGGTGTTAGTTGCTATTATTTTAACTTTATAAAAAGGTTCTTGACTTGTGAATTAAGTTA
GATTTTATAATCACCATTCTTCGACCATTAAATATTATTATTATTATTATAAAATATTATTATTA
TTATTATTATTATTATTTACATGCAAAACCGAGCCCAATGTTCAAACCCTAGTGTATTATTTACA
AGTCA
Found at i:187557 original size:3 final size:3
Alignment explanation
Indices: 187549--187602 Score: 74
Period size: 3 Copynumber: 18.0 Consensus size: 3
187539 TCAACCATTA
* *
187549 ATT ATT ATT ATT A-T ATT ATT ATT ATT ATT ATAA AAT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT
187594 ATT ATT ATT
1 ATT ATT ATT
187603 TACATATAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
2 2 0.04
3 42 0.93
4 1 0.02
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:187589 original size:22 final size:20
Alignment explanation
Indices: 187549--187601 Score: 81
Period size: 19 Copynumber: 2.7 Consensus size: 20
187539 TCAACCATTA
*
187549 ATTATTATTATTATATTATT
1 ATTATTATTATTATAATATT
*
187569 ATTATTATTA-TAAAATATT
1 ATTATTATTATTATAATATT
187588 ATTATTATTATTAT
1 ATTATTATTATTAT
187602 TTACATATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 17 0.59
20 12 0.41
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
ATTATTATTATTATAATATT
Found at i:188255 original size:3 final size:3
Alignment explanation
Indices: 188241--188313 Score: 67
Period size: 3 Copynumber: 24.0 Consensus size: 3
188231 TCAACCATTA
* * * *
188241 ATT ATC ATT ATT ATT ATC A-T ATT ATT ATT ATT ATAA AAT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT
* *
188286 ATT ATT ATAA AAT ATT ATT ATT ATT ATT
1 ATT ATT AT-T ATT ATT ATT ATT ATT ATT
188314 TACATAAAAA
Statistics
Matches: 55, Mismatches: 12, Indels: 6
0.75 0.16 0.08
Matches are distributed among these distances:
2 1 0.02
3 52 0.95
4 2 0.04
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (3 bp):
ATT
Found at i:188265 original size:11 final size:12
Alignment explanation
Indices: 188241--188313 Score: 58
Period size: 13 Copynumber: 6.0 Consensus size: 12
188231 TCAACCATTA
188241 ATTATCATTATT
1 ATTATCATTATT
188253 ATTATCA-TATT
1 ATTATCATTATT
* *
188264 ATTATTATTATAA
1 ATTATCATTAT-T
* *
188277 AATATTATTATT
1 ATTATCATTATT
* *
188289 ATTATAAAATATT
1 ATTAT-CATTATT
*
188302 ATTATTATTATT
1 ATTATCATTATT
188314 TACATAAAAA
Statistics
Matches: 49, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
11 10 0.20
12 19 0.39
13 20 0.41
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (12 bp):
ATTATCATTATT
Found at i:188313 original size:22 final size:19
Alignment explanation
Indices: 188247--188312 Score: 109
Period size: 19 Copynumber: 3.6 Consensus size: 19
188237 ATTAATTATC
*
188247 ATTATTATTAT--CATATT
1 ATTATTATTATAAAATATT
188264 ATTATTATTATAAAATATT
1 ATTATTATTATAAAATATT
188283 ATTATTATTATAAAATATT
1 ATTATTATTATAAAATATT
188302 ATTATTATTAT
1 ATTATTATTAT
188313 TTACATAAAA
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
17 11 0.24
19 35 0.76
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (19 bp):
ATTATTATTATAAAATATT
Found at i:192459 original size:30 final size:31
Alignment explanation
Indices: 192404--192507 Score: 174
Period size: 31 Copynumber: 3.4 Consensus size: 31
192394 TTCAACATTC
*
192404 AAGTGACGAAAATTTAATAAAATGATAATGT
1 AAGTGACCAAAATTTAATAAAATGATAATGT
* *
192435 AAGTGATCAAAATTTAAT-AAATGATAACGT
1 AAGTGACCAAAATTTAATAAAATGATAATGT
192465 AAGTGACCAAAATTTAATAAAATGATAATGT
1 AAGTGACCAAAATTTAATAAAATGATAATGT
192496 AAGTGACCAAAA
1 AAGTGACCAAAA
192508 CTTGTTAAAC
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
30 28 0.42
31 39 0.58
ACGTcount: A:0.52, C:0.07, G:0.14, T:0.27
Consensus pattern (31 bp):
AAGTGACCAAAATTTAATAAAATGATAATGT
Found at i:193154 original size:16 final size:16
Alignment explanation
Indices: 193133--193168 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
193123 ATTGTCAAAT
193133 ATTCAAGCGAAAGAAC
1 ATTCAAGCGAAAGAAC
193149 ATTCAAGCGAAAGAAC
1 ATTCAAGCGAAAGAAC
193165 ATTC
1 ATTC
193169 TATTAGTGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.47, C:0.19, G:0.17, T:0.17
Consensus pattern (16 bp):
ATTCAAGCGAAAGAAC
Found at i:194600 original size:21 final size:21
Alignment explanation
Indices: 194571--194617 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
194561 TTAGGGGTTA
194571 AAACCACCTAAAAACAACCCG
1 AAACCACCTAAAAACAACCCG
* * **
194592 AAACTACCTGAAAACCCCCCG
1 AAACCACCTAAAAACAACCCG
194613 AAACC
1 AAACC
194618 CTTCGGGTTT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.47, C:0.40, G:0.06, T:0.06
Consensus pattern (21 bp):
AAACCACCTAAAAACAACCCG
Found at i:195254 original size:16 final size:17
Alignment explanation
Indices: 195233--195264 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
195223 AAATCTGTGT
195233 TCTGGTTGGGT-TTGGA
1 TCTGGTTGGGTCTTGGA
195249 TCTGGTTGGGTCTTGG
1 TCTGGTTGGGTCTTGG
195265 GCACTGGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.03, C:0.09, G:0.44, T:0.44
Consensus pattern (17 bp):
TCTGGTTGGGTCTTGGA
Found at i:195771 original size:41 final size:42
Alignment explanation
Indices: 195726--195823 Score: 128
Period size: 42 Copynumber: 2.4 Consensus size: 42
195716 TGTTGGAAGC
* *
195726 ACCCGAAGGACTT-GTCATCTTGCTCGAAAGACTTA-TAGATG
1 ACCCGAAGGACTTAATCATCATGCTCGAAAGACTTACT-GATG
*
195767 ACCCGAAGGATTTAATCATCATGCTCGAAAGACTTACTGATG
1 ACCCGAAGGACTTAATCATCATGCTCGAAAGACTTACTGATG
* *
195809 GCCCGAATGACTTAA
1 ACCCGAAGGACTTAA
195824 GCTGATTCGA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
41 12 0.24
42 36 0.73
43 1 0.02
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (42 bp):
ACCCGAAGGACTTAATCATCATGCTCGAAAGACTTACTGATG
Found at i:196028 original size:42 final size:41
Alignment explanation
Indices: 195956--196050 Score: 129
Period size: 42 Copynumber: 2.3 Consensus size: 41
195946 TATGGATGGT
* *
195956 CCGAAGGACTTATCATCTTGCTCGAAAGACTTA-TAGATGAC
1 CCGAAGGACTTAGCATCATGCTCGAAAGACTTACT-GATGAC
* *
195997 CCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGC
1 CCGAAGGACTT-AGCATCATGCTCGAAAGACTTACTGATGAC
196039 CCGAAGGACTTA
1 CCGAAGGACTTA
196051 CTCATTAAGA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
41 11 0.23
42 35 0.74
43 1 0.02
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (41 bp):
CCGAAGGACTTAGCATCATGCTCGAAAGACTTACTGATGAC
Found at i:196188 original size:57 final size:55
Alignment explanation
Indices: 196058--196337 Score: 198
Period size: 58 Copynumber: 5.0 Consensus size: 55
196048 TTACTCATTA
* * * * * *
196058 AGAAACCCTTGAAAATCAAGCTTAGTTTC-TTAAAATATTTCGTTT-ACAATTATCATAA
1 AGAAACCCCT-AAAATCAGGCTTAGCTTCTTTAAAA-A-TTCATTTGA-AAATATCAT-C
* * *
196116 AGAATCCCCTAAAAATTAGGTTTAGCTTCTTTAAAAATT-ATTTGAAAATAATCATC
1 AGAAACCCCT-AAAATCAGGCTTAGCTTCTTTAAAAATTCATTTGAAAAT-ATCATC
** * * *
196172 ATGAAACCTTTGAAAATCAGACTTAG-TT-TCTAAAAAATCATTTGAAAATATCA--
1 A-GAAACCCCT-AAAATCAGGCTTAGCTTCTTTAAAAATTCATTTGAAAATATCATC
* * *
196225 AGAAACCCCTAAACATTAGGCTTAGCTTATTATAAAAATTCA-TTGGAAATCATCATC
1 AGAAACCCCTAAA-ATCAGGCTTAGCTTCTT-TAAAAATTCATTTGAAAAT-ATCATC
* * *
196282 AAGAAACCCCTAAAAATCAGGCTTAGTTTCTTTAAAAATTCTTTTGAAAACATCAT
1 -AGAAACCCCT-AAAATCAGGCTTAGCTTCTTTAAAAATTCATTTGAAAATATCAT
196338 GTCGTTTGGG
Statistics
Matches: 175, Mismatches: 32, Indels: 31
0.74 0.13 0.13
Matches are distributed among these distances:
51 3 0.02
52 16 0.09
53 3 0.02
54 8 0.05
55 25 0.14
56 19 0.11
57 39 0.22
58 53 0.30
59 9 0.05
ACGTcount: A:0.41, C:0.16, G:0.09, T:0.33
Consensus pattern (55 bp):
AGAAACCCCTAAAATCAGGCTTAGCTTCTTTAAAAATTCATTTGAAAATATCATC
Found at i:196298 original size:110 final size:110
Alignment explanation
Indices: 196115--196336 Score: 277
Period size: 110 Copynumber: 2.0 Consensus size: 110
196105 AATTATCATA
* * * *
196115 AAGAATCCCCTAAAAATTAGGTTTAGCTTCTTTAAAAATTATTTGAAAATAATCATCATGAAACC
1 AAGAAACCCCTAAAAATTAGGCTTAGCTTATTTAAAAATTATTTGAAAATAATCATCAAGAAACC
** * *
196180 TTTGAAAATCAGACTTAGTTTC-TAAAAAATCATTTGAAAATATC
66 CCTAAAAATCAGACTTAGTTTCTTAAAAAATCATTTGAAAACATC
* * *
196224 AAGAAACCCCTAAACATTAGGCTTAGCTTATTATAAAAATTCA-TTGGAAATCATCATCAAGAAA
1 AAGAAACCCCTAAAAATTAGGCTTAGCTTATT-TAAAAATT-ATTTGAAAATAATCATCAAGAAA
* * *
196288 CCCCTAAAAATCAGGCTTAGTTTCTTTAAAAATTCTTTTGAAAACATC
64 CCCCTAAAAATCAGACTTAGTTTC-TTAAAAAATCATTTGAAAACATC
196336 A
1 A
196337 TGTCGTTTGG
Statistics
Matches: 95, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
109 28 0.29
110 46 0.48
111 1 0.01
112 20 0.21
ACGTcount: A:0.42, C:0.16, G:0.09, T:0.32
Consensus pattern (110 bp):
AAGAAACCCCTAAAAATTAGGCTTAGCTTATTTAAAAATTATTTGAAAATAATCATCAAGAAACC
CCTAAAAATCAGACTTAGTTTCTTAAAAAATCATTTGAAAACATC
Found at i:196981 original size:22 final size:22
Alignment explanation
Indices: 196950--196995 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
196940 ATTATTTCAT
*
196950 ATTAACAAATTTAA-AAATATAA
1 ATTAA-AAAATTAATAAATATAA
*
196972 ATTAAAAAATTAATGAATATAA
1 ATTAAAAAATTAATAAATATAA
196994 AT
1 AT
196996 ATTAATTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (22 bp):
ATTAAAAAATTAATAAATATAA
Found at i:199620 original size:174 final size:174
Alignment explanation
Indices: 198302--199604 Score: 2035
Period size: 174 Copynumber: 7.5 Consensus size: 174
198292 AAAACAACAG
** * * *
198302 TATGTTATAAACCCAATTCCTGCTATCTACTATCCAAAGAAAGTTGGTAAG-TT-AGTAACAAT-
1 TATGTTATAAACCCAATTCCTTTTTTCTACCATCCGAAGAAAGTTGGTAAGTTTCAGTAAC-ATG
* * * *
198364 TAAAAATGGATAAATCTTTTGTTA-AGAAATTAAATTTTGATCGGTTTATAATTATTTTATTTTA
65 TAGAAATGGATAAATCTTTTGTTACA-AATTTAAATTTTGATCGGTCTATAATTCTTTTATTTTA
* *
198428 TCTCTTATAAAAAGATGGTCAGGAAATGGATAATGCAGGGAAAA-AA
129 TCTCTTATAAATAGATGGTCAGGAAATGGACAATGCA-GGAAAAGAA
*
198474 TATGTTATAAACCCAATTCATTTTTTCTACCATCCGAAGAAAGTTGGTAAGTTTCAGTAACATGT
1 TATGTTATAAACCCAATTCCTTTTTTCTACCATCCGAAGAAAGTTGGTAAGTTTCAGTAACATGT
* * * *
198539 AGAAATGGATAAATATTTTGCTACAAATTTAAATTTTGATCAGTCTACAATTCTTTTATTTTATC
66 AGAAATGGATAAATCTTTTGTTACAAATTTAAATTTTGATCGGTCTATAATTCTTTTATTTTATC
*
198604 TCTTATAAATAGATGGTCAGGAAAT-GATCAAAGCAGGAAAAGAA
131 TCTTATAAATAGATGGTCAGGAAATGGA-CAATGCAGGAAAAGAA
* * *
198648 TATGTTATAAACCCAATTCCTTTTTTCTACCATCCGAAGAAAGTTGGTAAGTTTCAATAACTTAT
1 TATGTTATAAACCCAATTCCTTTTTTCTACCATCCGAAGAAAGTTGGTAAGTTTCAGTAACATGT
* * *
198713 AGTAATGGATAAATATTTTGTTACAAATTTAAATTTTGATCGGTTTATAATTCTTTTATTTTATC
66 AGAAATGGATAAATCTTTTGTTACAAATTTAAATTTTGATCGGTCTATAATTCTTTTATTTTATC
* * *
198778 TCGTATAAAAAGATGGTCAGAAAATGGACAATGCAGGAAAAGAA
131 TCTTATAAATAGATGGTCAGGAAATGGACAATGCAGGAAAAGAA
*
198822 TATGTCATAAACCCAATTCCTTTTTTCTACCATCCGAAGAAAGTTGGTAAGTTTCAGTAACATGT
1 TATGTTATAAACCCAATTCCTTTTTTCTACCATCCGAAGAAAGTTGGTAAGTTTCAGTAACATGT
* *
198887 AGAAATGGAAAAATCTTTTGTTACAAATTGAAATTTTGATCGGTCTATAATTCTTTTATTTTATC
66 AGAAATGGATAAATCTTTTGTTACAAATTTAAATTTTGATCGGTCTATAATTCTTTTATTTTATC
* *
198952 TCTTATAATTAGATGGTCAGGAAATGGGCAATGCAGGAAAAGAA
131 TCTTATAAATAGATGGTCAGGAAATGGACAATGCAGGAAAAGAA
*
198996 TATGTTATAAACCCAATTCCTTTTTTCTACCATACGAAGAAAGTTGGTAAGTTTCAGTAACATGT
1 TATGTTATAAACCCAATTCCTTTTTTCTACCATCCGAAGAAAGTTGGTAAGTTTCAGTAACATGT
* *
199061 AGAAATGGATAAATCTTTTGTTATAAATTTAAATTTTGATCGGTCTATAACTCTTTTATTTTATC
66 AGAAATGGATAAATCTTTTGTTACAAATTTAAATTTTGATCGGTCTATAATTCTTTTATTTTATC
*
199126 TCTTATAAATAGATGGTCAGGAAATGGACAATGCAGGAAAAAAA
131 TCTTATAAATAGATGGTCAGGAAATGGACAATGCAGGAAAAGAA
* *
199170 TATGTCATAAACCCAATTCCTTTTTTTTACCATCCGAAGAAAGTTGGTAAGTTTCAGTAACATGT
1 TATGTTATAAACCCAATTCCTTTTTTCTACCATCCGAAGAAAGTTGGTAAGTTTCAGTAACATGT
*
199235 AGAAATGGATAAATCTTTTGTTACAAATTTAAATAATTTTGATCGGCCTATAATTCTTTTATTTT
66 AGAAATGGATAAATCTTTTGTTACAAATTT--A-AATTTTGATCGGTCTATAATTCTTTTATTTT
* * * *
199300 ATCTCTTATAAATAGATGATCAGGAAATAGATAATGCAGAAAAAGAA
128 ATCTCTTATAAATAGATGGTCAGGAAATGGACAATGCAGGAAAAGAA
* *
199347 TCTGTTATAAACCCAATTCCTTTTTTCTACCATCCGAAGAAAATTGGTAAGTTTCAGTAACATGT
1 TATGTTATAAACCCAATTCCTTTTTTCTACCATCCGAAGAAAGTTGGTAAGTTTCAGTAACATGT
* * *
199412 AGAAATGGATAAATCTTTTGTTACGAATTTAAATTTTGATCGGTTTATAGTTCTTTTATTTTATC
66 AGAAATGGATAAATCTTTTGTTACAAATTTAAATTTTGATCGGTCTATAATTCTTTTATTTTATC
199477 TCTTATAAATAGATGGTCAGGAAATGGACAATGCAGGAAAAGAA
131 TCTTATAAATAGATGGTCAGGAAATGGACAATGCAGGAAAAGAA
* * *
199521 TATGTTATAAATCCAATTCCTTTTTTCTACCATCCGAAGAAAATTGGTAAGTTTAAGT-ACATGT
1 TATGTTATAAACCCAATTCCTTTTTTCTACCATCCGAAGAAAGTTGGTAAGTTTCAGTAACATGT
*
199585 AGAAATAGATAAATCTTTTG
66 AGAAATGGATAAATCTTTTG
199605 AGACGGATTT
Statistics
Matches: 1041, Mismatches: 80, Indels: 19
0.91 0.07 0.02
Matches are distributed among these distances:
172 45 0.04
173 37 0.04
174 793 0.76
175 4 0.00
176 1 0.00
177 161 0.15
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.37
Consensus pattern (174 bp):
TATGTTATAAACCCAATTCCTTTTTTCTACCATCCGAAGAAAGTTGGTAAGTTTCAGTAACATGT
AGAAATGGATAAATCTTTTGTTACAAATTTAAATTTTGATCGGTCTATAATTCTTTTATTTTATC
TCTTATAAATAGATGGTCAGGAAATGGACAATGCAGGAAAAGAA
Found at i:199793 original size:2 final size:2
Alignment explanation
Indices: 199788--199822 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
199778 ATATGTGTTG
199788 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
199823 GGCCAGAAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:201754 original size:27 final size:27
Alignment explanation
Indices: 201721--201778 Score: 82
Period size: 27 Copynumber: 2.1 Consensus size: 27
201711 AAAATAATTT
* *
201721 TTTAATTTTTTAATGCTTGATGTG-GGA
1 TTTAATTTATTAATACTTGATG-GCGGA
201748 TTTAATTTATTAATACTTGATGGCGGA
1 TTTAATTTATTAATACTTGATGGCGGA
201775 TTTA
1 TTTA
201779 CGAAAACCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 1 0.04
27 27 0.96
ACGTcount: A:0.26, C:0.05, G:0.19, T:0.50
Consensus pattern (27 bp):
TTTAATTTATTAATACTTGATGGCGGA
Found at i:204055 original size:20 final size:19
Alignment explanation
Indices: 204009--204061 Score: 52
Period size: 20 Copynumber: 2.7 Consensus size: 19
203999 TAAGGTGTTT
204009 TTTGGTATCGATACTTAGG
1 TTTGGTATCGATACTTAGG
* ** *
204028 GTAAGTATTGATACCTTAGG
1 TTTGGTATCGATA-CTTAGG
*
204048 TTTGGTATCAATAC
1 TTTGGTATCGATAC
204062 CCAAAGGTAG
Statistics
Matches: 24, Mismatches: 9, Indels: 2
0.69 0.26 0.06
Matches are distributed among these distances:
19 10 0.42
20 14 0.58
ACGTcount: A:0.26, C:0.11, G:0.23, T:0.40
Consensus pattern (19 bp):
TTTGGTATCGATACTTAGG
Found at i:205760 original size:4 final size:4
Alignment explanation
Indices: 205751--205793 Score: 59
Period size: 4 Copynumber: 10.0 Consensus size: 4
205741 ATTCGAATAA
205751 ATTT ATTT ATTTT ATTTT ATTT ATTT ATTTT ATTT ATTT ATTT
1 ATTT ATTT A-TTT A-TTT ATTT ATTT A-TTT ATTT ATTT ATTT
205794 TTCTTCTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
4 24 0.65
5 13 0.35
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
ATTT
Found at i:205766 original size:9 final size:9
Alignment explanation
Indices: 205752--205793 Score: 61
Period size: 9 Copynumber: 4.8 Consensus size: 9
205742 TTCGAATAAA
205752 TTTATTTAT
1 TTTATTTAT
205761 TTTATTT-T
1 TTTATTTAT
205769 ATTTATTTAT
1 -TTTATTTAT
205779 TTTATTTA-
1 TTTATTTAT
205787 TTTATTT
1 TTTATTT
205794 TTCTTCTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
8 8 0.26
9 22 0.71
10 1 0.03
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTATTTAT
Found at i:205777 original size:13 final size:13
Alignment explanation
Indices: 205752--205794 Score: 77
Period size: 13 Copynumber: 3.2 Consensus size: 13
205742 TTCGAATAAA
205752 TTTATTTATTTTAT
1 TTTATTTA-TTTAT
205766 TTTATTTATTTAT
1 TTTATTTATTTAT
205779 TTTATTTATTTAT
1 TTTATTTATTTAT
205792 TTT
1 TTT
205795 TCTTCTTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
13 21 0.72
14 8 0.28
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTATTTATTTAT
Found at i:209024 original size:9 final size:9
Alignment explanation
Indices: 209010--209037 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
209000 AGTTTTTTTT
209010 AAAAATGAA
1 AAAAATGAA
209019 AAAAATGAA
1 AAAAATGAA
209028 AAAAATGAA
1 AAAAATGAA
209037 A
1 A
209038 TTATAGAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.79, C:0.00, G:0.11, T:0.11
Consensus pattern (9 bp):
AAAAATGAA
Found at i:214693 original size:12 final size:12
Alignment explanation
Indices: 214676--214708 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
214666 ATCCATTACA
214676 TTTTTATTTTTG
1 TTTTTATTTTTG
214688 TTTTTATTTTTG
1 TTTTTATTTTTG
214700 -TTTTATTTT
1 TTTTTATTTT
214709 ATTTTTTCGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 9 0.43
12 12 0.57
ACGTcount: A:0.09, C:0.00, G:0.06, T:0.85
Consensus pattern (12 bp):
TTTTTATTTTTG
Found at i:214715 original size:12 final size:11
Alignment explanation
Indices: 214676--214715 Score: 53
Period size: 12 Copynumber: 3.5 Consensus size: 11
214666 ATCCATTACA
214676 TTTTTATTTTT
1 TTTTTATTTTT
214687 GTTTTTATTTTT
1 -TTTTTATTTTT
*
214699 GTTTTATTTTAT
1 TTTTTATTTT-T
214711 TTTTT
1 TTTTT
214716 CGATTGAGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 9 0.36
12 16 0.64
ACGTcount: A:0.10, C:0.00, G:0.05, T:0.85
Consensus pattern (11 bp):
TTTTTATTTTT
Found at i:217435 original size:27 final size:27
Alignment explanation
Indices: 217403--217468 Score: 116
Period size: 27 Copynumber: 2.4 Consensus size: 27
217393 TCTTTTTACT
217403 TTTTCAAGTTTTCA-TTTTTTTCTTTTA
1 TTTTCAAGTTTTCATTTTTTTTC-TTTA
217430 TTTTCAAGTTTTCATTTTTTTTCTTTA
1 TTTTCAAGTTTTCATTTTTTTTCTTTA
217457 TTTTCAAGTTTT
1 TTTTCAAGTTTT
217469 GTTTTTAATA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
27 30 0.79
28 8 0.21
ACGTcount: A:0.15, C:0.11, G:0.05, T:0.70
Consensus pattern (27 bp):
TTTTCAAGTTTTCATTTTTTTTCTTTA
Found at i:218987 original size:136 final size:136
Alignment explanation
Indices: 218628--219102 Score: 697
Period size: 136 Copynumber: 3.5 Consensus size: 136
218618 TGAACCGATC
* * * * *
218628 AACATTTCTAATAGAGAGTTCATAATGAGAAGAGCTCATTCGACAGAGGGAG-AGAAAGTTCATA
1 AACATTTCCAATTGAGAGTTCATAATGAGAAGAACTCATCCGACAAAGGGAGAAG-AAGTTCATA
* * * *
218692 ATGAGAAGAACTTGTTCGACCTATTGTTCGATTCATAACACTTCGAATCAGCAACACCTCGCTTG
65 ATGAAAATAACTTGTTCGACCTATTGCTCGATTCATAACACTTCGAATCAGCAACGCCTCGCTTG
218757 AGGGATT
130 AGGGATT
* *
218764 AACATTTCCAATTAAGAGTTC-TAATGAGAAGAACTCATTCGACAAAGGGAGAAGAAGTTCATAA
1 AACATTTCCAATTGAGAGTTCATAATGAGAAGAACTCATCCGACAAAGGGAGAAGAAGTTCATAA
* * * * * *
218828 TGAGAAGT-ACTTGTTTGACCTATTGCTCGATTCACAAAACTTCAAATAAGCAACGCCTCGCTTG
66 TGA-AAATAACTTGTTCGACCTATTGCTCGATTCATAACACTTCGAATCAGCAACGCCTCGCTTG
218892 AGGGATT
130 AGGGATT
218899 AACATTTCCAATTGAGAGTTCATAATGAGAAGAACTCATCCGACAAAGGGAGAAGAAGTTCATAA
1 AACATTTCCAATTGAGAGTTCATAATGAGAAGAACTCATCCGACAAAGGGAGAAGAAGTTCATAA
* *
218964 TGAAAATAACTTGTTCGACCTATTGCAC-AGTTCATAACACTTCGAATCAGTAACGCCTCGCTTG
66 TGAAAATAACTTGTTCGACCTATTGCTCGA-TTCATAACACTTCGAATCAGCAACGCCTCGCTTG
219028 AGGGATT
130 AGGGATT
* * *
219035 GACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGATAAAGGGAGAAGAAGTTCATAA
1 AACATTTCCAATTGAGAGTTCATAATGAGAAGAACTCATCCGACAAAGGGAGAAGAAGTTCATAA
219100 TGA
66 TGA
219103 CCTATCAGCA
Statistics
Matches: 306, Mismatches: 28, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
135 121 0.40
136 185 0.60
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.26
Consensus pattern (136 bp):
AACATTTCCAATTGAGAGTTCATAATGAGAAGAACTCATCCGACAAAGGGAGAAGAAGTTCATAA
TGAAAATAACTTGTTCGACCTATTGCTCGATTCATAACACTTCGAATCAGCAACGCCTCGCTTGA
GGGATT
Found at i:219118 original size:97 final size:97
Alignment explanation
Indices: 219009--219199 Score: 312
Period size: 97 Copynumber: 2.0 Consensus size: 97
218999 AACACTTCGA
* *
219009 ATCAGTAACGCCTCGCTTGAGGGATTGACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCAT
1 ATCAGCAACGCCTCGCTTGAGGGATTGACATTTCCAATAGAGAGTTCATAATGAGAAGAACTCAT
*
219074 CCGATAA-AGGGAGAAGAAGTTCATAATGACCT
66 CC-AAAAGAGGGAGAAGAAGTTCATAATGACCT
***
219106 ATCAGCAACGCCTCGCTTGAGGGATTGACATTTTTGATAGAGAGTTCATAATGAGAAGAACTCAT
1 ATCAGCAACGCCTCGCTTGAGGGATTGACATTTCCAATAGAGAGTTCATAATGAGAAGAACTCAT
219171 CCAAAAGAGGGAGAAGAAGTTCATAATGA
66 CCAAAAGAGGGAGAAGAAGTTCATAATGA
219200 GAAGAACTTC
Statistics
Matches: 87, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
96 3 0.03
97 84 0.97
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.24
Consensus pattern (97 bp):
ATCAGCAACGCCTCGCTTGAGGGATTGACATTTCCAATAGAGAGTTCATAATGAGAAGAACTCAT
CCAAAAGAGGGAGAAGAAGTTCATAATGACCT
Found at i:219298 original size:233 final size:233
Alignment explanation
Indices: 218876--219300 Score: 593
Period size: 233 Copynumber: 1.8 Consensus size: 233
218866 ACTTCAAATA
*
218876 AGCAACGCCTCGCTTGAGGGATTAACATTTCCAATTGAGAGTTCATAATGAGAAGAACTCATCCG
1 AGCAACGCCTCGCTTGAGGGATTAACATTTCCAATAGAGAGTTCATAATGAGAAGAACTCATCCG
* * * * * * *
218941 ACAAAGGGAGAAGAAGTTCATAATGAAAATAACTTGTTCGACCTATTGCACAGTTCATAACACTT
66 AAAAAGGGAGAAGAAGTTCATAATGAAAAGAACTTCTTCGACCTATCGCACAATTAACAACACTT
* * ** * * * * *
219006 CGAATCAGTAACGCCTCGCTTGAGGGATTGACATTTCCAATGGAGAGTTCATAATGAGAAGAACT
131 CGAATCAGTAACACCTCACTTGAGGGATCAACATTCCCAATAGAAAGATCACAATGAGAAGAACT
219071 CATCCGATAAAGGGAGAAGAAGTTCATAATGACCTATC
196 CATCCGATAAAGGGAGAAGAAGTTCATAATGACCTATC
* ***
219109 AGCAACGCCTCGCTTGAGGGATTGACATTTTTGATAGAGAGTTCATAATGAGAAGAACTCATCC-
1 AGCAACGCCTCGCTTGAGGGATTAACATTTCCAATAGAGAGTTCATAATGAGAAGAACTCATCCG
*
219173 AAAAGAGGGAGAAGAAGTTCATAATGAGAAGAACTTCTTCGACCTATCGCTA-AATTAACAACAC
66 AAAA-AGGGAGAAGAAGTTCATAATGAAAAGAACTTCTTCGACCTATCGC-ACAATTAACAACAC
* * *
219237 TTCGAATCAGTGACACCTCACTTGAGGGATCAACATTCCCAGTAGAAAGATCACGATGAGAAGA
129 TTCGAATCAGTAACACCTCACTTGAGGGATCAACATTCCCAATAGAAAGATCACAATGAGAAGA
219301 GCCTGCAACT
Statistics
Matches: 165, Mismatches: 25, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
232 3 0.02
233 161 0.98
234 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (233 bp):
AGCAACGCCTCGCTTGAGGGATTAACATTTCCAATAGAGAGTTCATAATGAGAAGAACTCATCCG
AAAAAGGGAGAAGAAGTTCATAATGAAAAGAACTTCTTCGACCTATCGCACAATTAACAACACTT
CGAATCAGTAACACCTCACTTGAGGGATCAACATTCCCAATAGAAAGATCACAATGAGAAGAACT
CATCCGATAAAGGGAGAAGAAGTTCATAATGACCTATC
Found at i:233481 original size:3 final size:3
Alignment explanation
Indices: 233473--233511 Score: 64
Period size: 3 Copynumber: 13.7 Consensus size: 3
233463 CGCCCTGTCC
233473 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TA TT- TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
233512 TTGTTTTTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 4 0.12
3 30 0.88
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:235757 original size:131 final size:131
Alignment explanation
Indices: 235587--235955 Score: 454
Period size: 131 Copynumber: 2.8 Consensus size: 131
235577 ATCGATATTG
* *
235587 AGAATAATAATATCTTTTCATTTCGGTTGGAGTAATAAATGAATGCTTTAAGGCATGAGATGTCA
1 AGAATAATAATATCTTTTCATTTCGATTGGAGTAATAAATGAATGCTTTAAGGTATGAGATGTCA
* * *
235652 TTTATTCTCGATTGGAAATAATTTGATATTACCGTTTTCTCTCGAATTAATATTGATTTTTAAGA
66 TTTATTCTCGATTGGAAATAATTTGATATTACCATTTTCTCTCGAATCAATATTGAATTTTAAGA
*
235717 T
131 C
* * * ** * * *
235718 GGCATACA-AATATCTCTTCATTTCGATTGGAACAGTAAATGACTACTTTAAGGTATGAGATGTC
1 AGAATA-ATAATATCTTTTCATTTCGATTGGAGTAATAAATGAATGCTTTAAGGTATGAGATGTC
* * * * * *
235782 ATTTATTCTCGATTGGAAATTATTAT-ATAATATCATTTTCACTCGGATCGATATTGAATTTTAA
65 ATTTATTCTCGATTGGAAATAATT-TGATATTACCATTTTCTCTCGAATCAATATTGAATTTTAA
235846 GAC
129 GAC
* * * * **
235849 AGAATAATGATATCTTTTCATTTCGATTGGAGTAATAAATGATTGTTTTAAGGTATGAGAGGTTG
1 AGAATAATAATATCTTTTCATTTCGATTGGAGTAATAAATGAATGCTTTAAGGTATGAGATGTCA
* *
235914 TTTATTCTCGATTGGAAATAATTAGATATTACTATTTTCTCT
66 TTTATTCTCGATTGGAAATAATTTGATATTACCATTTTCTCT
235956 TTTGAAATTA
Statistics
Matches: 195, Mismatches: 39, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
130 1 0.01
131 192 0.98
132 2 0.01
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.41
Consensus pattern (131 bp):
AGAATAATAATATCTTTTCATTTCGATTGGAGTAATAAATGAATGCTTTAAGGTATGAGATGTCA
TTTATTCTCGATTGGAAATAATTTGATATTACCATTTTCTCTCGAATCAATATTGAATTTTAAGA
C
Found at i:240092 original size:174 final size:174
Alignment explanation
Indices: 239880--262586 Score: 25537
Period size: 174 Copynumber: 129.9 Consensus size: 174
239870 AAAACAACAG
* * * *
239880 TCTGTTATAAATCAAATTCCTATTCTCTATTATCCAAAGAAAGTTGGTAAGTTTTAATAACATAT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * *
239945 AATAATGGATAAAACTTTT-TATACAAATTTAAATTTGGATCGATCTATAATTCTTTTATTTTCT
66 AGTAATGGATAAATCTTTTGT-TACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCT
* *
240009 CTCTTGAAAAAAGATGGTCAGGAAACAGAGTATGCAGGAAAAGAA
130 CTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* *
240054 TCTGTTATAAACCAAATTCCTATTATGTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * *
240119 ACTAATGGATAAATCTTTTG-TACCAAATTTAAATTTTGACCGGTTTATAATTCTTTTATTTTCT
66 AGTAATGGATAAATCTTTTGTTA-CAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCT
* * * *
240183 CTCTTGAAAAAAGATGGTCAAGAAACGGGGAATGTATGAAAAGAA
130 CTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
*
240228 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACAAGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * *
240293 ACTAATGGATAAATCTTTTGTTACAAATTTAAATTTTGATCGGTTTATAATTATTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* *
240358 TCTTGAAAAAAGATGGTCATGAAACGGAGAATGCAAGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * **
240402 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGGGAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* ** *
240467 AGTAACGGATAAATCTTTTGTTACAAATTTAAATTTGCTTCGGTCTATAATTCTTTTATTTTTTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * * * *
240532 TCTTGAAAAAAGATTGCCAGGAAACGGAGTATGCAAGAAAACAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * * * *
240576 TATGTCATAAACCAAATTCCTATTCTTTACTATCCAAAGAAAGTTGGTTAGTTTGAGTAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * *
240641 AGTAATGAATAAATCTTTTGTTACAATTTTAAATTTGGATCGGTCTAAAATTCCTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * * *
240706 TTTTCAAAAAAGATGGTCAGGAAACAGAGAATGCATGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
240750 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * * *
240815 AGTAATGGATAAATCTTTTGTTACAAATTTGAATTTTGATCGATTTATAATTATTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
*
240880 TCTTGAAAAAAGATGGTCAGGAAACGGAGTATGCAGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * * *
240924 TCTGTTATAAACCAAATTCCTATTATTTACTATCCAAAGAAAGTTGGTAAGTTTGAGTAACATAT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * *
240989 AGTAATGGATAAATATTTTGTTACAATTTTAAATTTGGATCGGTCTAAAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * * *
241054 TCTTGAAAAAAGATGGTCAAGAAACGGGGAATGTATGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * *
241098 TCTGTTATAAACCAAATTCCTATTCTTTACTATCCAAATAAAGTTGGTAAGTTTCAATAACAAGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * * *
241163 ACTAATGGATAAATCTTTTGTTACAAATTTGAATTTTGATCGATTTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * *
241228 TCTTGAAAAATGACGGTCAGGAAACAGAGAATGCAGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
** * * *
241272 TCTGTTATAAACCAAATTAATATTTTCTACTATCCGAAGAAAGTTGGTACGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * * * *
241337 AGTAATGGGTAAATATTTTGTTACAAATTTGAATTTTGATTGGTTTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* **
241402 TCTTGAAAAAA-ATGGTTAGGAAACAAAGAATGCAGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
** * * * *
241445 TCTGTTATAAACCAAATTCAAATTTTCTACTATCCGAATAAAGTTGGTAAGTTTGAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* *
241510 AGTAATGAATAAATCTTTTGTTACAAAATTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
*
241575 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAAGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* ** * * *
241619 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGGAGAGAGTTGATAAGTTTCAATAACAAGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * *
241684 ACTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGTTCGGTCTATAATTCTTTTATTTTTTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * * *
241749 TCATGAAAAAAGATTGCCAGGAAACGGAGTATGCAGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * * * *
241793 TATGTCATAAACCAAATTCCTATTCTTTACTATCCAAAGAAAGTTGGTTAGTTTGAGTAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* *
241858 AGTAATGGATAAATCTTTTGTTACAATTTTAAATTTGGATCGGTCTAAAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * * *
241923 TTTTCAAAAAAGATGGTCAGGAAACAGAGAATGCATGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
241967 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * *
242032 AGTAATGGATAAATCTTTTGTTACAAATTTGAATTTTGATCGG-CTTATAATTATTTTATTTTCT
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTC-TATAATTCTTTTATTTTCT
* * *
242096 TTCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCATGAAAAGAA
130 CTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
** * * *
242141 TCTGTTATAAACCAAATTAATATTTTCTACTATCCGAAGAAAGTTGGTACGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * *
242206 AGTAATGGATAAATCTTTTGTTACAAATTTGAATTTTGATCGGTTTATAAATCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* *
242271 TCTTGAGAAAAGATGGTCAGGAAACGGAGAATGCAAGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * *
242315 TCTGTTATAAACCAAATTCCTATTTTTTACTGTCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
*
242380 AGTAATGGATAAATCTTTTGTTACAAATTTAAAATTGGATCGGTCTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* *
242445 TCTTGAAAAAAGATGGTCAGGAAACGGAGTATGTAGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* *
242489 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTGAATAACAAGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * *
242554 ACTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGTTCGGTCTATAATTCTTTTATTTTTTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* *
242619 TCTTGAAAAAAGATGGTCAGGAAACGGAGTATGCCGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * *
242663 TCTGTTATAAACCAAATTCCTATTATTTACTATCCAAAGAAAGTTGGTAAGTTTGAGTAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * *
242728 AGTAATGGATAAATATTTTGTTACAATTTTAAATTTGGATCGGTCTAAAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * * *
242793 TTTTGAAAAAAGATGGTAAGTAAACGGAGAATGCATGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
*
242837 TCTGTTATAAACCAAACTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * *
242902 ACTAATGGATAAATCTTTTGTTACAAATTTGAATTTTGATCGGTTTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * *
242967 TCTTGAAAAATGATGGTCAGGAAACAGAGAATGCAGGAAAACAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* ** * * * * *
243011 TATGTTATAAACCAAATTAATATTTTCTACTATCCGAAGAAAGTTAGTACGTTTCAATAACATGC
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * * *
243076 AGTAATGGGTAAATCTTTTGTTACAAATTTGAATTTTGATTC-GTTTATAACTCTTTTATTTTCT
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGA-TCGGTCTATAATTCTTTTATTTTCT
* ***
243140 CTCTTGAAAAAAGATGGTTAGGAAATATAGAATGCAGGAAAAGAA
130 CTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
** * * * *
243185 TCTGTTATAAACCAAATTCAAATTTTCTACTATCCGAATAAAGTTGGTAAGTTTGAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
*
243250 AGTAATGAATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* *
243315 TCTTGAAAAAAGATGGTCAGGAAACGGATAATGCAAGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * *
243359 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAGAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
** *
243424 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGCTTCGGTCTATAATTCTTTTATTTTTTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * * *
243489 TCTTGAAAAAAGTTTGTCAGGAAACAGAGTATGCAGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * * * * *
243533 TATGTCATAAACCAAATTCCTCTTCTTTACTATCCAAAGAAAGTTGGTTAGTTTGAGTAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* *
243598 AGTAATGGATAAATCTTTTGTTACAATTTTAAATTTGGATCGGTCTAAAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * * *
243663 TTTTAAAAAAAGATGGTCAGGAAACAGAGAATGCATGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
243707 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * * *
243772 ACTAATGGATAAATCTTTTGTTACAAATTTGAATTTTGATCGGTTTATAATTATTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * *
243837 TCTTG-AAAAAGAAGGTCAGGAAACAGAGAATGCATGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
** * *** *
243880 TCTGTTATAAACCAAATTAATATTTTCTACTATTTGAAGAAAGTTGGTACGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * *
243945 AGTAATGGATAAATCTTTTGTTACAAATTTGAATTTTGATCGATTTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* *
244010 TCTTGAAAAAAGATGGTCATGAAACGGAGAATGCAAGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * * * *
244054 TATGTTATAAACCAAATTCCTATTTTTTACTGTCCGAAGAAAGTTGGTAAGTTTCAATAACATAT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* *
244119 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTCTATTTTCTT
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * *
244184 TCTTGACAAAAGATGGTCAGGAATCGGAGTATGCAGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * *
244228 TCTGTTATAAA-GAAATTTCCTATTCTCTACTATCTAAAGAAAGTTGGAAAGTTTCAATAACAAG
1 TCTGTTATAAACCAAA-TTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATG
* * *
244292 TACTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGTTCGGTCTATAATTCTTTTATTTTTT
65 TAGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCT
* * **
244357 CTCTTGAAAAAAGATTGCCAGGAAACGGAGTGTGCAGGAAAAGAA
130 CTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * * * *
244402 TATGTCATAAACCAAATTCCTATTCTTTACTATCCAAAGAAAGTTGGTTAGTTTGAGTAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * *
244467 AGTAATCGATAAATCTTTTGTTACAATTTTAAATTTGGATCAGTCTAAAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * * * *
244532 TTTTCAAAAAAGATGGTTAGGAAACAGAGAATGCATGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
*
244576 TCTGTTATAAACCAAATTTCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * * * *
244641 ACTAATGGAAAAATCTTTTGTTACAAATTTGAATTTTGATCGGTTTATAATTATTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * * * *
244706 TCTTGTAAAAAGATGGTCAGGAAACAGAGAATACAAGAAAAGAG
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * *
244750 TCTGTTATAAATCAAATTCCTATTCTCTATTATCCAAAGAAAGTTGGTAAGTTTTAATAACATAT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
*
244815 AGTAATGGATAAAACTTTT-TATACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCT
66 AGTAATGGATAAATCTTTTGT-TACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCT
* * * *
244879 CTCTTGAAAAAAGATGGTCTGGAAACAGAGTATGCATGAAAAGAA
130 CTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
*
244924 TCTGTTATAAACCAAATTCCTATTCTGTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * * * *
244989 ACTAATGGATAAATCTTTT-ATACCAAATTTAAATTTTGACCTGTTTATAATTCTTTTATTTTCT
66 AGTAATGGATAAATCTTTTGTTA-CAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCT
** * * *
245053 CTCTTGAAAAAAGATGGTCAAAAAACGGGGAATGTATGAAAAGAA
130 CTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* *
245098 TCGGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACAAGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * *
245163 ACTAATGGATAAATCTTTTGTTACAAATTTAAATTTTGATCGGTTTATAATTATTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
*
245228 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAAGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * **
245272 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGGGAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* ** *
245337 AGTAACGGATAAATCTTTTGTTACAAATTTAAATTTGCTTCGGTCTATAATTCTTTTATTTTTTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * * * * *
245402 TCTTGAAAAAAGATTGCCAGGAAATGGAGTATGCAAGAAAACAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * * *
245446 TATGTCATAAACAAAATTCCTATTCTTTACTATCCAAATAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * * *
245511 ACTAATGGATAAATCTTTTCTTACAAATTTGAATTTTGATCGGTTTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
*
245576 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAAGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * * *
245620 TCTGTTATAAACCAAATTCATATTTTCTACTATCCGAAGAGAGTTGAG-AAGTTTCAATAACAAG
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTG-GTAAGTTTCAATAACATG
* * *
245684 TACTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGTTCGGTCTATAATTCTTTTATTTTTT
65 TAGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCT
* * * *
245749 CTCATGAAAAAAGATTGCCAGGAAACGGAGTATGCAGGAAAAGAA
130 CTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * * * *
245794 TATGTCATAAACCAAATTCCTATTCTTTACTATCCAAAGAAAGTTGGTTAGTTTGAGTAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* *
245859 AGTAATGGATAAATCTTTTGTTACAATTTTAAATTTGGATCGGTCTAAAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * * *
245924 TTTTCAAAAAAGATGGTCAGGAAACAGAGAATGCATGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
245968 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * *
246033 AGTAATGGATAAATCTTTTGTTACAAATTTGAATTTTGATCGG-CTTATAATTATTTTATTTTCT
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTC-TATAATTCTTTTATTTTCT
* * *
246097 TTCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCATGAAAAGAA
130 CTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
** * * *
246142 TCTGTTATAAACCAAATTAATATTTTCTACTATCCGAAGAAAGTTGGTACGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * *
246207 AGTAATGGATAAATCTTTTGTTACAAATTTGAATTTTGATCGGTTTATAAATCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* *
246272 TCTTGAGAAAAGATGGTCAGGAAACGGAGAATGCAAGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * *
246316 TCTGTTATAAACCAAATTCCTATTTTTTACTGTCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
*
246381 AGTAATGGATAAATCTTTTGTTACAAATTTAAAATTGGATCGGTCTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
*
246446 TCTTGAAAAAAGATGGTCAGGAAACGGAGTATGCAGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
*
246490 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACAAGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * *
246555 ACTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGTTCGGTCTATAATTCTTTTATTTTTTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* *
246620 TCTTGAAAAAAGATGGTCAGGAAACGGAGTATGCCGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * *
246664 TCTGTTATAAACCAAATTCCTATTATTTACTATCCAAAGAAAGTTGGTAAGTTTGAGTAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * *
246729 AGTAATGGATAAATATTTTGTTACAATTTTAAATTTGGATCGGTCTAAAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * * *
246794 TTTTGAAAAAAGATGGTAAGTAAACGGAGAATGCATGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
*
246838 TCTGTTATAAACCAAACTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * *
246903 ACTAATGGATAAATCTTTTGTTACAAATTTGAATTTTGATCGGTTTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * *
246968 TCTTGAAAAATGATGGTCAGGAAACAGAGAATGCAGGAAAACAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
** * * * * *
247012 TCTGTTATAAACCAAATTAATATTTTCTACTATCCGAAGAAAGTTAGTACGTTTCAATAACATGC
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * * * *
247077 AGTAATGGGTAAATATTTTGTTACAAATTTGAATTTTGATTC-GTTTATAACTCTTTTATTTTCT
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGA-TCGGTCTATAATTCTTTTATTTTCT
* **
247141 CTCTTGAAAAAAGATGGTTAGGAAATAGAGAATGCAGGAAAAGAA
130 CTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
** * * * *
247186 TCTGTTATAAACCAAATTCAAATTTTCTACTATCCGAATAAAGTTGGTAAGTTTGAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
*
247251 AGTAATGAATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* *
247316 TCTTGAAAAAAGATGGTCAGGAAACGGATAATGCAAGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * *
247360 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAGAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
** *
247425 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGCTTCGGTCTATAATTCTTTTATTTTTTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * * *
247490 TCTTGAAAAAAGTTTGTCAGGAAACAGAGTATGCAGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * * * * *
247534 TATGTCATAAACCAAATTCCTCTTCTTTACTATCCAAAGAAAGTTGGTTAGTTTGAGTAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
*
247599 AGTAATGGATAAATCTTTTGTTA-AAATTTTAAATTTGGATCGGTCTAAAATTCTTTTATTTTCT
66 AGTAATGGATAAATCTTTTGTTACAAA-TTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCT
* * *
247663 CT-TTTAAAAAAGATGGTCAGGAAACAGAGAATGCATGAAAAGAA
130 CTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
247707 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * * *
247772 ACTAATGGATAAATCTTTTGTTACAAATTTGAATTTTGATCGGTTTATAATTATTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * *
247837 TCTTGAAAAAAGAAGGTCAGGAAACAGAGAATGCATGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
** * *** *
247881 TCTGTTATAAACCAAATTAATATTTTCTACTATTTGAAGAAAGTTGGTACGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * *
247946 AGTAATGGATAAATCTTTTGTTACAAATTTGAATTTTGATCGATTTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* *
248011 TCTTGAAAAAAGATGGTCATGAAACGGAGAATGCAAGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * * *
248055 TATGTTATAAACCAAATTCCTATTTTTTACTGTCCGAAGAAAGTTGGTAAGTTTCAATAACTATT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAAC-A--
*** * * * * * **
248120 TTCGGTCTA-TAATTCTTCTATTTTCTTTCTTGACAAAAGATGGTCAGGAATCGGAGTATGCAGG
63 -T--G--TAGTAATGGAT-AAATCT-TTTGTT-AC--AA-AT--TTA--AATTTG-G-AT-C-GG
*** * * * **** ** * * *
248184 AAAAGAA-TCTATTATAAAGCAATTTC-CTATT-CTCTACTAT-CTAAAGAAA-GTTG-GTAAGT
109 TCTATAATTCT-TT-T-----ATTTTCTCTCTTGAAAAAAGATGGTCAGGAAACG--GAG-AA--
* ** *
248243 TTCAATAACAAGTA
162 TGCAGGAA-AAGAA
* ** * * * * ** **** * ** *
248257 -C--TAATGGA-TAAA-T-CTTTTGT-TACAAATTTAAATTTGGTTCGGTCTATA-ATTCTTTTA
1 TCTGTTATAAACCAAATTCCTATTCTCTAC-TATCCAAAGAAAGTT-GG--TA-AGTTTCAATAA
** * ** ** * * ** ** ** * * * ** * ** **
248314 TTTTTTCTCTTGAAAAAAGATTGCCAGGAAACGGAGTGTGCAGGAA-AAGAATATGTC-ATAAAC
61 CATGTAGTAATGGATAAATCTT---TTGTTAC-AAAT-T-TA--AATTTGGATCGGTCTATAATT
* * ** * * ** ** * *
248377 CAAATTCCTATTCTT-TACTATCCAAAGAA-A--GT-TGG----TTAGTTTG-A-G-TAA-CA
118 C---TT-TTATT-TTCT-CTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * * * * *** * * *
248427 --TG-TAGTAATCGATAAAT-CTTTTGT-TACAAT---TTTAAATTTGGATCAGTCT-AA-AATT
1 TCTGTTA-TAAACCA-AATTCCTATTCTCTACTATCCAAAGAAAGTTGG-TAAGTTTCAATAA--
* * * ** *** **** * * *** * *
248482 CTTTTATTTTCTCTTTTCAAAAAAGATGGTTAGGAAACAGAGAATGCATGAAAAGAATCTGT-TA
61 CATGTA-GTAAT-GGAT--AAATCTTTTGTTA-CAAATTTA-AAT--TTG----G-ATCGGTCTA
** * * ** * * * * *
248546 TAAACCAAATTTCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTACTAATG
113 TAATTC---TTT-TATTTTCT-CTCTTGAAA-AAAGATGGTCAG----GA-AAC--GGA-GAATG
*
248611 --GAAAAATCTTTTGTTACAAA
164 CAGGAAAA------G-----AA
* * * * * ** * * ** * * *
248631 TTTGAATTTTGATCGGTTTATAATTATTTTATTTTCT-CTCTTGAAA-AAAGATGGTCAG----G
1 TCTG--TTATAAAC----CA-AA-T-TCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCA
* ***** * * *** * *
248690 A-AACA-G-AG-AATGCATGAAAAGAGCCTGTTATAAA-TCAAATTCCTATTC--TCTATTATCC
57 ATAACATGTAGTAATGGAT--AAATCTTTTGTTACAAATTTAAATTTGGA-TCGGTCTATAATTC
**** * *** * * * * * ***** * *
248748 AAAGAAAGTTGGTAAGT-TTTAATAACATATAGTAATGGATAAAACTTTTTATACA-AATTTAAA
119 --TTTTA-TT-TTCTCTCTTGAA-AAAAGATGGTCA-GG---AAACGGAGAATGCAGGA---AAA
*
248811 TTTGGA
172 ---GAA
* ** * * * ** * * *
248817 TCGGTCTATAATTC---TT-TTATTTTCT-CTCTTGAAA-AAAGATGGTCAG----GA-AACA-G
1 TCTGT-TATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATG
*** * * ** *** * ****
248870 -AGT-ATGCAGGA-AAAGAATCTGTTATAAA-CCAAATTCCTATTCTGTACTATCCAA---AGAA
65 TAGTAAT---GGATAAATCTTTTGTTACAAATTTAAATTTGGA-TCGGT-CTAT--AATTCTTTT
* ** *** ** * * ** * * * * **
248928 AGTTGGTAAGTTTCAATAACAT-GT-A-CTAATGGATAAAT-CTTTTGTACCA-AA
123 ATTTTCTCTCTTGAAAAAAGATGGTCAGGAAACGGA-GAATGC---AGGAAAAGAA
* * ** * * * ** * *
248979 TTTAAATT-TTGACCGGTTTATAATTCTTTTATTTTCT-CTCTTGACA-AAAGATGGTCAAG---
1 TCT--GTTATAAACC-----A-AATTC--CTATTCTCTACTATCCAAAGAAAGTTGGT-AAGTTT
** * * * * * * *** ** ** * *
249038 --A-AACGGGGAATGT-ATGAAAAGAATCTGTTATAAACCAAATTCCTATTCTCTA-CTATCCAA
55 CAATAAC-ATGTA-GTAATGGATA-AATCTTTTGT-TA-CAAATTTAAATT-TGGATCGGTCTAT
*** * ** ** * ** * * * **
249098 AGAAAGTTGGTAAGTT-TC-AAT--AACAAG-TACTAATGGATAAATCTTTTGTTACAAATTTA-
114 A-ATTCTT-TTATTTTCTCTCTTGAAAAAAGATGGTCA-GG--AAA-C----G-GA-GAATGCAG
**
249157 -AATTTTG-A
167 GAA--AAGAA
* ** * * * ** * * *
249165 TCGGTT-TATAA--TTATT-TTATTTTCT-CTCTTGAAA-AAAGATGGTCAG----GA-AAC--G
1 TCTGTTATA-AACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATG
* *** * * ** *** ** * ****
249217 GAG-AATGCAAGA-AAAGAATCTGTTATAAA-CCAAATTCCTAT-TTTCTACT-ATCCGAAGGGA
65 TAGTAATG---GATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTA-TAATTC--TTTTA
* ** *** ** * * * * * * *
249277 GTTGGTAAGTTTCAATAACAT-GT-A-GTAACGGATAAAT-CTTTTGTTACAAATTTAAA
124 TTTTCTCTCTTGAAAAAAGATGGTCAGGAAACGGA-GAATGC---AG-GA-AAA---GAA
* **** * * * * * ** ** *
249333 TTTGCTT-CGGTCTATAATTCTTTTATT-TTTTCTCTTGAAA-AAAGATT-GCCAG----GA-AA
1 TCTG-TTATAAACCA-AATTC--CTATTCTCTACTATCCAAAGAAAG-TTGGTAAGTTTCAATAA
* * * * * * * * ** *** **
249389 C--GGAGT-ATGCAAGAAAACAATATGTCATAAA-CCAAATTCCTATTCTTTACTATCCAAATAA
61 CATGTAGTAATG-GATAAATC-TTTTGTTACAAATTTAAATTTGGA-TCGGT-CTAT---AAT--
** * * ** * * ** * ****** * **
249450 AGTTGGTAAGTTTCAATAACATG-TACTA-ATGGAT-A--AATCTTTTCTTACA--AATTTGAA
117 TCTT--TTATTTTC--TCTCTTGAAAAAAGATGG-TCAGGAAACGGAGAATGCAGGAA-AAGAA
***** * * * ** * *** * *
249507 T-T-TTGATCGGTTTATAATTCTTTTATTTTCT-CTCTTGAAA-AAAGATGGTCAAGAAACGGAG
1 TCTGTT-AT-AAACCA-AATTC--CTATTCTCTACTATCCAAAGAAAGTTGGT-AAGTTTC-AAT
* * * * * ** *
249568 AATGCAAGAAAAGAATATGTTATAAACCAAATTCCTATTT-TCTAC-TATCCGAAGAGAGTTGAG
59 AA--CATG--TAGTA-ATG-GAT-----AAA-T-CT-TTTGT-TACAAAT--TTA-A-ATTTG-G
* * * * ** ** * * * **
249631 A-AGTTTCAATAACAAGTACTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGTTC-GGTCT
104 ATCG-GTC--T-ATAA-TTCT--TTTAT-TTTC-TCTCTT-GAAA---AAAGATGG-TCAGG---
** *** * * *
249694 ATAATTCTTTTATTTTTTCTCATGAAAAAAGA
152 A-AA--C--GGA--GAAT-GCAGGAAAAGA-A
** * ** * * ****** * * * ** ** *
249726 T-TGCCAGGAAACGGAGTATGC-AGGAAAAGAATATGTCATAA-ACCAAATTCCTATTCTTTACT
1 TCTGTTA-TAAACCAAAT-TCCTA-TTCTCTACTAT-CCA-AAGA--AAGTTGGTA-AGTTT-CA
* * * ** * * *** * **
249788 ATCCAA-A-GAAAGT--TGG-TTAGT-TTGAG-TA-ACATGTAGTAA--TGGATAAATCTTTTGT
57 AT--AACATG-TAGTAATGGATAAATCTTTTGTTACAAATTTA--AATTTGGATCGGTCTATAAT
* ******* ** ** *
249843 TACAATTTTAAATTTGGATCGGTCTAAAATTCTTTTATTTTCTCTTTTCAAAAAAGATGGTCAGG
117 T-C--TTTT--ATTT---TC--TC------TC-TTGAAAAAAGATGGTC-AGGAA-ACGG--A--
*
249908 AAACAGAGAATGCATGAAAAGAA
159 -------GAATGCAGGAAAAGAA
249931 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* *
249996 AGTAATGGATAAATCTTTTGTTACAAATTTGAATTT-GATCGG-CTTATAATTATTTTATTTTCT
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTC-TATAATTCTTTTATTTTCT
* * *
250059 TTCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCATGAAAAGAA
130 CTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
** * * *
250104 TCTGTTATAAACCAAATTAATATTTTCTACTATCCGAAGAAAGTTGGTACGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * *
250169 AGTAATGGATAAATCTTTTGTTACAAATTTGAATTTTGATCGGTTTATAAATCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* *
250234 TCTTGAGAAAAGATGGTCAGGAAACGGAGAATGCAAGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * *
250278 TCTGTTATAAACCAAATTCCTATTTTTTACTGTCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
*
250343 AGTAATGGATAAATCTTTTGTTACAAATTTAAAATTGGATCGGTCTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
*
250408 TCTTGAAAAAAGATGGTCAGGAAACGGAGTATGCAGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* *
250452 TCTGTTATAAGCCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACAAGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * *
250517 ACTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGTTCGGTCTATAATTCTTTTATTTTTTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* *
250582 TCTTGAAAAAAGATGGTCAGGAAACGGAGTATGCCGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * *
250626 TCTGTTATAAACCAAATTCCTATTATTTACTATCCAAAGAAAGTTGGTAAGTTTGAGTAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * *
250691 AGTAATGGATAAATATTTTGTTACAATTTTAAATTTGGATCGGTCTAAAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * *
250756 T-TTG-AAAAAGATGGTAAGTAAACGGAGAATGCATGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
*
250798 TCTGTTATAAACCAAACTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * *
250863 ACTAATGGATAAATCTTTTGTTACAAATTTGAATTTTGATCGGTTTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * *
250928 TCTTGAAAAATGATGGTCAGGAAACAGAGAATGCAGGAAAACAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
** * * * * *
250972 TCTGTTATAAACCAAATTAATATTTTCTACTATCCGAAGAAAGTTAGTACGTTTCAATAACATGC
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * * *
251037 AGTAATGGGTAAATCTTTTGTTACAAATTTGAATTTTGATTC-GTTTATAACTCTTTTATTTTCT
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGA-TCGGTCTATAATTCTTTTATTTTCT
* **
251101 CTCTTGAAAAAAGATGGTTAGGAAATAGAGAATGCAGGAAAAGAA
130 CTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
** * * * *
251146 TCTGTTATAAACCAAATTCAAATTTTCTACTATCCGAATAAAGTTGGTAAGTTTGAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
*
251211 AGTAATGAATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* *
251276 TCTTGAAAAAAGATGGTCAGGAAACGGATAATGCAAGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * *
251320 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAGAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
** *
251385 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGCTTCGGTCTATAATTCTTTTATTTTTTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * * *
251450 TCTTGAAAAAAGTTTGTCAGGAAACAGAGTATGCAGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * * * * *
251494 TATGTCATAAACCAAATTCCTCTTCTTTACTATCCAAAGAAAGTTGGTTAGTTTGAGTAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
*
251559 AGTAATGGATAAATCTTTTGTTA-AAATTTTAAATTTGGATCGGTCTAAAATTCTTTTATTTTCT
66 AGTAATGGATAAATCTTTTGTTACAAA-TTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCT
* * * *
251623 CTTTTAAAAAAAGATGGTCAGGAAACAGAGAATGCATGAAAAGAA
130 CTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
251668 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * * *
251733 ACTAATGGATAAATCTTTTGTTACAAATTTGAATTTTGATCGGTTTATAATTATTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * *
251798 TCTTGAAAAAAGAAGGTCAGGAAACAGAGAATGCATGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
** * *** *
251842 TCTGTTATAAACCAAATTAATATTTTCTACTATTTGAAGAAAGTTGGTACGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * *
251907 AGTAATGGATAAATCTTTTGTTACAAATTTGAATTTTGATCGATTTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* *
251972 TCTTGAAAAAAGATGGTCATGAAACGGAGAATGCAAGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * * * * * *
252016 TATGTTATAAACAAAATTCCTATTTTTTACTGTCCGAAGAAAGTTGGTAAGCTTCAATAACATAT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* *
252081 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTCTATTTTCTT
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * *
252146 TCTTGACAAAAGATGGTCAGGAATCGGAGTATGCAGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * * *
252190 TCTATTATAAAGCAATTTCCTATTCTCTACTATCTAAAGAAAGTTGGTAAGTTTCAATAACAAGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * *
252255 ACTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGTTCGGTCTATAATTCTTTTATTTTTTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * **
252320 TCTTGAAAAAAGATTGCCAGGAAACGGAGTGTGCAGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * * * *
252364 TATGTCATAAACCAAATTCCTATTCTTTACTATCCAAAGAAAGTTGGTTAGTTTGAGTAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * *
252429 AGTAATCGATAAATCTTTTGTTACAATTTTAAATTTGGATCAGTCTAAAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * * * *
252494 TTTTCAAAAAAGATGGTTAGGAAACAGAGAATGCATGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
*
252538 TCTGTTATAAACCAAATTTCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * * * *
252603 ACTAATGGAAAAATCTTTTGTTACAAATTTGAATTTTGATCGGTTTATAATTATTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * *
252668 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCATGAAAAGAG
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * * *
252712 CCTGTTATAAATCAAATTCCTATTCTCTATTATCCAAAGAAAGTTGGTAAGTTTTAATAACATAT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
*
252777 AGTAATGGATAAAACTTTT-TATACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCT
66 AGTAATGGATAAATCTTTTGT-TACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCT
* *
252841 CTCTTG-AAAAAGATGGTCAGGAAACAGAGTATGCA-GAAAAGAA
130 CTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
*
252884 TCTGTTATAAACCAAATTCCTATTCTGTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * *
252949 ACTAATGGATAAATCTTTTG-TACCAAATTTAAATTTTGACCGGTTTATAATTCTTTTATTTTCT
66 AGTAATGGATAAATCTTTTGTTA-CAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCT
* * * *
253013 CTCTTGAAAAAAGATGGTCAAGAAACGGGGAATGTATGAAAAGAA
130 CTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
*
253058 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACAAGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * *
253123 ACTAATGGATAAATCTTTTGTTACAAATTTAAATTTTGATCGGTTTATAATTATTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
*
253188 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAAGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * **
253232 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGGGAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* **
253297 AGT-ACGGATAAATCTTTTGTTACAAATTTAAATTTGCTTCGGTCTATAATTCTTTTATTTT-TC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * * * *
253360 TCTTGAAAAAAGATTGCCAGGAAACGGAGTATGCAAGAAAACAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * *
253404 TATGTCATAAACCAAATTCCTATTCTTTACTATCCAAATAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * * *
253469 ACTAATGGATAAATCTTTTCTTACAAATTTGAATTTTGATCGGTTTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* *
253534 TCTTGAAAAAAGATGGTCAAGAAACGGAGAATGCAAGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * * *
253578 TATGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAGAGTTGAG-AAGTTTCAATAACAAG
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTG-GTAAGTTTCAATAACATG
* * *
253642 TACTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGTTCGGTCTATAATTCTTTTATTTTTT
65 TAGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCT
* * * *
253707 CTCATG-AAAAAGATTGCCAGGAAACGGAGTATGCAGGAAAAGAA
130 CTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * * * *
253751 TATGTCATAAACCAAATTCCTATTCTTTACTATCCAAAGAAAGTTGGTTAGTTTGAGTAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* *
253816 AGTAATGGATAAATCTTTTGTTACAATTTTAAATTTGGATCGGTCTAAAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * * *
253881 TTTTCAAAAAAGATGGTCAGGAAACAGAGAATGCATGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
253925 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * *
253990 AGTAATGGATAAATCTTTTGTTACAAATTTGAATTTTGATCGG-CTTATAATTATTTTATTTTCT
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTC-TATAATTCTTTTATTTTCT
* * *
254054 TTCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCATGAAAAGAA
130 CTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* ** * * *
254099 TCTGTAATAAACCAAATTAATATTTTCTACTATCCGAAGAAAGTTGGTACGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * *
254164 AGTAATGGATAAATCTTTTGTTACAAATTTGAATTTTGATCGGTTTATAAATCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* *
254229 TCTTG-AGAAAGATGGTCAGGAAACGGAGAATGCAAGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * *
254272 TCTGTTATAAACCAAATTCCTATTTTTTACTGTCCGAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
*
254337 AGTAATGGATAAATCTTTTGTTACAAATTTAAAATTGGATCGGTCTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
*
254402 TCTTGAAAAAAGATGGTCAGGAAACGGAGTATGCAGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
*
254446 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACAAGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * *
254511 ACTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGTTCGGTCTATAATTCTTTTATTTTTTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* *
254576 TCTTGAAAAAAGATGGTCAGGAAACGGAGTATGCCGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * *
254620 TCTGTTATAAACCAAATTCCTATTATTTACTATCCAAAGAAAGTTGGTAAGTTTGAGTAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * *
254685 AGTAATGGATAAATATTTTGTTACAATTTTAAATTTGGATCGTTCTAAAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * * *
254750 TTTTGAAAAAAGATGGTAAGTAAACGGAGAATGCATGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
*
254794 TCTGTTATAAACCAAACTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * *
254859 ACTAATGGATAAATCTTTTGTTACAAATTTGAATTTTGATCGGTTTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * *
254924 TCTTGAAAAATGATGGTCAGGAAACAGAGAATGCAGGAAAACAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
** * * * * *
254968 TCTGTTATAAACCAAATTAATATTTTCTACTATCCGAAGAAAGTTAGTACGTTTCAATAACATGC
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * * *
255033 AGTAATGGGTAAATCTTTTGTTACAAATTTGAATTTTGATTC-GTTTATAACTCTTTTATTTTCT
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGA-TCGGTCTATAATTCTTTTATTTTCT
* **
255097 CTCTTGAAAAAAGATGGTTAGGAAATAGAGAATGCAGGAAAAGAA
130 CTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
** * * * *
255142 TCTGTTATAAACCAAATTCAAATTTTCTACTATCCGAATAAAGTTGGTAAGTTTGAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
*
255207 AGTAATGAATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* *
255272 TCTTGAAAAAAGATGGTCAGGAAACGGATAATGCAAGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * *
255316 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAGAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
**
255381 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGCTTCGGTCTATAATTCTTTTATTTT-TC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * * *
255445 TCTTG-AAAAAGTTTGTCAGGAAACAGAGTATGCAGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * * * * *
255488 TATGTCATAAACCAAATTCCTCTTCTTTACTATCCAAAGAAAGTTGGTTAGTTTGAGTAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* *
255553 AGTAATGGATAAATCTTTTGTTACAATTTTAAATTTGGATCGGTCTAAAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * * *
255618 TTTTAAAAAAAGATGGTCAGGAAACAGAGAATGCATGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
255662 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * * *
255727 ACTAATGGATAAATCTTTTGTTACAAATTTGAATTTTGATCGGTTTATAATTATTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * *
255792 TCTTGAAAAAAGAAGGTCAGGAAACAGAGAATGCATGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
** * *** *
255836 TCTGTTATAAACCAAATTAATATTTTCTACTATTTGAAGAAAGTTGGTACGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * *
255901 AGTAATGGATAAATCTTTTGTTACAAATTTGAATTT-GATCGATTTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* *
255965 TCTTGAAAAAAGATGGTCATGAAACGGAGAATGCAAGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * * * *
256009 TATGTTATAAACCAAATTCCTATTTTTTACTGTCCGAAGAAAGTTGGTAAGTTTCAATAACATAT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* *
256074 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTCTATTTTCTT
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * *
256139 TCTTGACAAAAGATGGTCAGGAATCGGAGTATGCAGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * *
256183 TCTGTTATAAAGCAATTTCCTATTCTCTACTATCTAAAGAAAGTTGGTAAGTTTCAATAACAAGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * *
256248 ACTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGTTCGGTCTATAATTCTTTTATTTTTTT
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTA-TTTTCT
* * ***
256313 CTCTTGAAAAAAGATTGCCAGGAAACGGATTGTGCAGGAAAAGAA
130 CTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * * * *
256358 TATGTCATAAACCAAATTCCTATTCTTTACTATCCAAAGAAAGTTGGTTAGTTTGAGTAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * *
256423 AGTAATCGATAAATCTTTTGTTACAATTTTAAATTTGGATCAGTCTAAAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * * * *
256488 TTTTCAAAAAAGATGGTTAGGAAACAGAGAATGCATGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
*
256532 TCTGTTATAAACCAAATTTCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * * * * *
256597 ACTAATGGAAAAATCTTTTGTTACAAATTTGAATTTTGATCGGTTTATAATTATTTTATTTTCAC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * * * *
256662 TCTTGAAAAAAAATGGTCAGGAAACAGAGAATGCATGTAAAGAG
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
** * * *
256706 TCTGTTATAAATTAAATTCCTATTCTCTATTATCCAAAGAAAGTTGGTAAGTTTTAATAACATAT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
*
256771 AGTAATGGATAAAACTTTT-TATACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCT
66 AGTAATGGATAAATCTTTTGT-TACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCT
* *
256835 CTCTTGAAAAAAGATGGTCAGGAAACAGAGTATGCAGGAAAAGAA
130 CTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
*
256880 TCTGTTATAAACCAAATTCCTATTCTGTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * * *
256945 ACTAATGGATAAATCTTTTG-TACCAAATTTAAATTTTGACCGGTTTATACTTCTTTTATTTTCT
66 AGTAATGGATAAATCTTTTGTTA-CAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCT
* * *
257009 CTCTTGAAAAAAGATGGTCAAGAAACGG-GAAATGTATGAAAAGAA
130 CTCTTGAAAAAAGATGGTCAGGAAACGGAG-AATGCAGGAAAAGAA
* *
257054 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTACGTTTCAATAACAAGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * * *
257119 ACTAATGGAAAAATCTTTTGTTACAAATTTAAATTTTGATCGGTTTATAATTATTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
*
257184 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAAGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * **
257228 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGGGAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* ** * *
257293 AGTAACGGATAAATCTTTTGTTACAAATTTAAATTTGCTTTGGTCTATAATTCTTTTATTTTTTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * * * *
257358 TCTTGAAAAAAGATTGCCAGGAAACGGAGTATGCAAGAAAACAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * *
257402 TATGTCATAAACCAAATTCCTATTCTTTACTATCCAAATAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * * *
257467 ACTAATGGATAAATCTTTTCTTACAAATTTGAATTTTGATCGGTTTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
*
257532 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAAGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * *
257576 TCTGTTATAAACCAAATTCCTATTTTCTACTATCCGAAGAGAGTTGAG-AAGTTTCAATAACAAG
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTG-GTAAGTTTCAATAACATG
* * *
257640 TACTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGTTCGGTCTATAATTCTTTTATTTTTT
65 TAGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCT
* * * *
257705 CTCATGAAAAAAGATTGCCAGGAAACGGAGTATGCAGGAAAAGAA
130 CTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * * * *
257750 TATGTCATAAACCAAATTCCTATTCTTTACTATCCAAAGAAAGTTGGTTAGTTTGAGTAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* *
257815 AGTAATGGATAAATCTTTTGTTACAATTTTAAATTTGGATCGGTCTAAAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * ** *
257880 TTTTCAAAAAAGATGGTCAGGAAACATAGAATGCATGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
*
257924 TCTGTTATAAACCAAATTCATATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * *
257989 AGTAATGGATAAATCTTTTGTTACAAATTTGAATTTTGATCGG-CTTATAATTATTTTATTTTCT
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTC-TATAATTCTTTTATTTTCT
* * *
258053 TTCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCATGAAAAGAA
130 CTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
** * * *
258098 TCTGTTATAAACCAAATTAATATTTTCTACTATCCGAAGAAAGTTGGTACGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * *
258163 AGTAATGGATAAATCTTTTGTTACAAATTTGAATTTTGATCGGTTTATAAATCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* *
258228 TCTTGAGAAAAGATGGTCAGGAAACGGAGAATGCAAGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * *
258272 TCTGTTATAAACCAAATTCCTATT-TTTGACTGTCCGAAGAAAGTTGGTAAGTTTCAATAACATG
1 TCTGTTATAAACCAAATTCCTATTCTCT-ACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATG
*
258336 TAGTAATGGATAAATCTTTTGTTACAAATTTAAAATTGGATCGGTCTATAATTCTTTTATTTTCT
65 TAGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCT
*
258401 CTCTTGAAAAAAGATGGTCAGGAAACGGAGTATGCAGGAAAAGAA
130 CTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
*
258446 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACAAGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * *
258511 ACTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGTTCGGTCTATAATTCTTTTATTTTTTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* *
258576 TCTTGAAAAAAGATGGTCAGGAAACGGAGTATGCCGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * **
258620 TCTGTTATAAACCAAATTCCTATTATTTACTATCCAAAGAAAGTTGGTAAGTTTGAGCAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * *
258685 AGTAATGGATAAATATTTTGTTACAATTTTAAATTTGGATCGGTCTAAAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * * *
258750 TTTTGAAAAAAGATGGTAAGTAAACGGAGAATGCATGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
*
258794 TCTGTTATAAACCAAACTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * *
258859 ACTAATGGATAAATCTTTTGTTACAAATTTGAATTTTGATCGGT-TATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * *
258923 TCTTGAAAAATGATGGTCAGGAAACAGAGAATGCAGGAAAACAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
** * * * * *
258967 TCTGTTATAAACCAAATTAATATTTTCTACTATCCGAAGAAAGTTAGTACGTTTCAATAACATGC
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * * *
259032 AGTAATGGGTAAATCTTTTGTTACAAATTTGAATTTTGATTC-GTTTATAACTCTTTTATTTTCT
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGA-TCGGTCTATAATTCTTTTATTTTCT
* **
259096 CTCTTGAAAAAAGATGGTTAGGAAATAGAGAATGCAGGAAAAGAA
130 CTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
** * * * *
259141 TCTGTTATAAACCAAATTCAAATTTTCTACTATCCGAATAAAGTTGGTAAGTTTGAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
*
259206 AGT-ATGAATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* *
259270 TCTTGAAAAAAGATGGTCAGGAAACGGATAATGCAAGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * *
259314 TCTGTTATAAACCAAATTCCTATT-TTTACTATCCGAAGAGAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
** *
259378 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGCTTCGGTCTATAATTCTTTTATTTTTTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * * *
259443 TCTTGAAAAAAGTTTGTCAGGAAACAGAGTATGCAGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * * * * *
259487 TATGTCATAAACCAAATTCCTCTTCTTTACTATCCAAAGAAAGTTGGTTAGTTTGAGTAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * *
259552 AGTAATGGATAAATCTTTTGTTACAATTTTAAATTTGGATCGGTCTAAAATTCTTATATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * * *
259617 TTTTAAAAAAAGATGGTCAGGAAACCGAGAATGCATGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
259661 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * * *
259726 ACTAATGGATAAATCTTTTGTTACAAATTTGAATTTTGATCGGTTTATAATTATTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * *
259791 TCTTGAAAAAAGAAGGTCAGGAAACAGAGAATGCATGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
** * *** *
259835 TCTGTTATAAACCAAATTAATATTTTCTACTATTTGAAGAAAGTTGGTACGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * *
259900 AGTAATGGATAAATCTTTTGTTACAAATTTGAATTTTGATCGATTTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * *
259965 TCTTGAAAAAAGATTGTCATGAAACGGAGAATGCAAGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * * * *
260009 TATGTTATAAACCAAATTCCTATTTTTTACTGTCCGAAGAAAGTTGGTAAGTTTCAATAACATAT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* *
260074 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTCTATTTTCTT
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * *
260139 TCTTGACAAAAGATGGTCAGGAATCGGAGTATGCAGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * * *
260183 TCTGTTATAAAGCAATTTCCTATTCTCGACTATCTAAAGAAAGTTGGTAAGTTTCAATAACAAGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * *
260248 ACTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGTTCGGTCTATAATTCTTTTATTTTTTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * **
260313 TCTTGAAAAAAGATTGCCAGGAAACGGAGTGTGCAGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * * * * *
260357 TATGTCATAAACCAAATTCCTATTCTTTACTATCCAAAGAAAGTTGGTTAGTTTGAGTAACATGC
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * *
260422 AGTAATCGATAAATCTTTTGTTACAATTTTAAATTTGGATCAGTCTAAAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * * * *
260487 TTTTCAAAAAAGATGGTTAGGAAACAGAGAATGCATGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
260531 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * * *
260596 ACTAATGGATAAATCTTTTGTTACAAATTTGAATTTTGATCGGTTTATAATTATTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * *
260661 TCTTGAAAAAAGAAGGTCAGGAAACAGAGAATGCATGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* ** * *** *
260705 TATGTTATAAACCAAATTAATATTTTCTACTATTTGAAGAAAGTTGGTACGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * *
260770 AGTAATGGATAAATCTTTTGTTACAAATTTGAATTTTGATCGGTTTATAATTATTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * *
260835 TCTTGAAAAAAGAAGGTCAGGAAACAGAGAATGCATGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
** * *** *
260879 TCTGTTATAAACCAAATTAATATTTTCTACTATTTGAAGAAAGTTGGTACGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * *
260944 AGTAATGGATAAATCTTTTGTTACAAATTTGAATTTTGATCGATTTATAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* *
261009 TCTTGAAAAAAGATGGTCATGAAACGGAGAATGCAAGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * * * *
261053 TATGTTATAAACCAAATTCCTATTTTTTACTGTCCGAAGAAAGTTGGTAAGTTTCAATAACATAT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* *
261118 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTCTATTTTCTT
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * *
261183 TCTTGACAAAAGATGGTCAGGAATCGGAGTATGCAGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * * *
261227 TCTGTTATAAAGCAATTTCCTATTCTCGACTATCTAAAGAAAGTTGGTAAGTTTCAATAACAAGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * *
261292 ACTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGTTCGGTCTATAATTCTTTTATTTTTTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * **
261357 TCTTG-AAAAAGATTGCCAGGAAACGGAGTGTGCAGGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * * * * *
261400 TATGTCATAAACCAAATTCCTATTCTTTACTATCCAAAGAAAGTTGGTTAGTTTGAGTAACATGC
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * *
261465 AGTAATCGATAAATCTTTTGTTACAATTTTAAATTTGGATCAGTCTAAAATTCTTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * * * *
261530 TTTTCAAAAAAGATGGTTAGGAAACAGAGAATGCATGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
*
261574 TCTGTTATAAACCAAATTTCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * * * *
261639 ACTAATGGAAAAATCTTTTGTTACAAATTTGAATTTTGATCGGTTTATAATTATTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * *
261704 TCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCATGAAAAGAG
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * *
261748 TCTGTTATAAATCAAATT-CTATTCTCTATTATCCAAAGAAAGTTGGTAAGTTTTAAT-A-ATAT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
*
261810 AGTAATGGATAAAACTTTT-TATACAAATTTAAATTTGGATCGGTCTATAATTCTTTTA-TTTCT
66 AGTAATGGATAAATCTTTTGT-TACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCT
* *
261873 CTCTTGAAAAAAGATGGTCAGGAAACAGAGTATGCAGGAAAAGAA
130 CTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
*
261918 TCTGTTATAAACCAAATTCCTATTCTGTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * *
261983 ACTAATGGATAAATCTTTTG-TACCAAATTTAAATTT-GACCGGTTTATAATTCTTTTATTTTCT
66 AGTAATGGATAAATCTTTTGTTA-CAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCT
* * * *
262046 CTCTTGAAAAAAGATGGTCAAGAAACGGGGAATGTATGAAAAGAA
130 CTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
*
262091 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACAAGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * *
262156 ACTAATGGATAAATCTTTTGTTACAAATTTAAATTTTGATCGGTTTATAATTATTTTATTTTCTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* *
262221 TCTTGAAAAAAGATGGTCAGGAAATGGAGAATGCAAGAAAAGAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * **
262265 TCTTTTATAAACCAAATTCCTATTTTCTACTATCCGAAGGGAGTTGGTAAGTTTC-A-AACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* ** *
262328 AGTAACGGATAAATCTTTTGTTACAAATTTAAATTTGCTTCGGTCTATAATTCTTTTATTTTTTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
* * * * *
262393 TCTTGAAAAAAGATTGCCAGGAAACGGAGTATGCAAGAAAACAA
131 TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
* * * *
262437 TATGTCATAAACCAAATTCCTATTCTTTACTATCCAAATAAAGTTGGTAAGTTTCAATAACATGT
1 TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
* * * * * *
262502 ACTAATGGATAAATCTTTTCTTACAAATTTGAATTTTGATCGGTTTATAATTCTTTTATTTTTTC
66 AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
*
262567 TCTTGAAAAATGATGGTCAG
131 TCTTGAAAAAAGATGGTCAG
262587 TGTTGACGAA
Statistics
Matches: 19438, Mismatches: 2632, Indels: 926
0.85 0.11 0.04
Matches are distributed among these distances:
160 5 0.00
161 1 0.00
162 4 0.00
163 1 0.00
164 1 0.00
165 5 0.00
166 11 0.00
167 12 0.00
168 15 0.00
169 17 0.00
170 77 0.00
171 113 0.01
172 750 0.04
173 2016 0.10
174 15616 0.80
175 193 0.01
176 11 0.00
177 24 0.00
178 12 0.00
179 9 0.00
180 10 0.00
181 12 0.00
182 18 0.00
183 15 0.00
184 23 0.00
185 12 0.00
186 13 0.00
187 11 0.00
188 6 0.00
189 8 0.00
190 13 0.00
191 16 0.00
192 7 0.00
193 6 0.00
194 22 0.00
195 23 0.00
196 26 0.00
197 9 0.00
198 27 0.00
199 31 0.00
200 28 0.00
201 24 0.00
202 18 0.00
203 19 0.00
204 23 0.00
205 13 0.00
206 26 0.00
207 4 0.00
208 7 0.00
209 4 0.00
210 1 0.00
211 1 0.00
212 5 0.00
213 3 0.00
214 4 0.00
215 6 0.00
216 11 0.00
217 8 0.00
218 5 0.00
219 13 0.00
220 4 0.00
221 2 0.00
222 5 0.00
223 1 0.00
224 2 0.00
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.36
Consensus pattern (174 bp):
TCTGTTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGT
AGTAATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAATTCTTTTATTTTCTC
TCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAA
Found at i:248235 original size:136 final size:136
Alignment explanation
Indices: 247991--248251 Score: 378
Period size: 136 Copynumber: 1.9 Consensus size: 136
247981 TTGATCGATT
* *
247991 TATAATTCTTTTATTTTCTCTCTTGAAAAAAGATGGTCATGAAACGGAGAATGCAAGAAAAGAAT
1 TATAATTCTTCTATTTTCTCTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAAGAAAAGAAT
* * * * *
248056 ATGTTATAAACCAAATTCCTATTTTTTACTGTCCGAAGAAAGTTGGTAAGTTTCAATAACTATTT
66 ATATTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACTATTT
248121 TCGGTC
131 TCGGTC
* * * * *
248127 TATAATTCTTCTATTTTCTTTCTTGACAAAAGATGGTCAGGAATCGGAGTATGCAGGAAAAGAAT
1 TATAATTCTTCTATTTTCTCTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAAGAAAAGAAT
* * * *
248192 CTATTATAAAGCAATTTCCTATTCTCTACTATCTAAAGAAAGTTGGTAAGTTTCAATAAC
66 ATATTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAAC
248252 AAGTACTAAT
Statistics
Matches: 109, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
136 109 1.00
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.36
Consensus pattern (136 bp):
TATAATTCTTCTATTTTCTCTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAAGAAAAGAAT
ATATTATAAACCAAATTCCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACTATTT
TCGGTC
Found at i:267269 original size:15 final size:15
Alignment explanation
Indices: 267249--267279 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
267239 TGGTTTATAA
267249 TTCTTTTATTTTCTC
1 TTCTTTTATTTTCTC
267264 TTCTTTTATTTTCTC
1 TTCTTTTATTTTCTC
267279 T
1 T
267280 CTTGAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.19, G:0.00, T:0.74
Consensus pattern (15 bp):
TTCTTTTATTTTCTC
Found at i:267558 original size:174 final size:174
Alignment explanation
Indices: 267264--268949 Score: 2318
Period size: 174 Copynumber: 9.7 Consensus size: 174
267254 TTATTTTCTC
* *
267264 TTCTTTTATTTTCTCTCTTGAAAAAAGATGGTTAGGAAACATG-GAATGCAGGAAAAGAATCTGT
1 TTCTTTTATTTTCTCTCTTGAAAAAAGATGGTCAGGAAAC-GGAGAATGCAGGAAAAGAATCTGT
** * * *
267328 TATAAACCAAATTCAAATTTTCTACTATCCGAATAAAGTTGGTAAGTTTGAATAACATGTAGTAA
65 TATAAACCAAATTCCTATTTTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAA
*
267393 TGAATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAA
130 TGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAA
* * * * *
267438 TTCTTTTAATTTCTCGCTCGAAAAAAGATGGTCAGGAAACGGATAATGCAAGAAAAGAATCTGTT
1 TTCTTTTATTTTCTCTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAATCTGTT
* *
267503 ATAAACCAAATTCCTATTTTCTACTATCCGAAGAGAGTTGGTAAGTTTCAATAACATGTAGTAAT
66 ATAAACCAAATTCCTATTTTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAAT
**
267568 GGATAAATCTTTTGTTACAAATTTAAATTTGCTTCGGTCTATAA
131 GGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAA
* * * * * *
267612 TTCTTTTATTTTTTCTCTTGAAAAAAGATTGTCAGGAGACGGAGTATGCAGGAAAAGAATATGTC
1 TTCTTTTATTTTCTCTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAATCTGTT
* * * *
267677 ATAAACCAAATTCCTATTCTT-TACTATCCAAAGATAGTTGGTTAGTTTGAGTAACATGTAGTAA
66 ATAAACCAAATTCCTATT-TTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAA
* * * *
267741 TGGATAAATATTTTGTAACAATTTTAAATTTGGATCGGTCTAAAA
130 TGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAA
* * * * *
267786 TTCTTTTATTTTCTCTTTTAAAAAAAGATGGTCAGGAAACAGAGAATGCATGAAAAGAATATGTT
1 TTCTTTTATTTTCTCTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAATCTGTT
* * *
267851 ATAAACCAAATTCCTATTCTCTAATATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTACTAAT
66 ATAAACCAAATTCCTATTTTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAAT
* * *
267916 GGATAAATCTTTTGTTACAAATTTGAATTTTGATCGGTTTATAA
131 GGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAA
* * *
267960 TTATTTTATTTTCTCTCTTGAAAAAAGATGGTCAGGAAACAGAGAATGCATGAAAAGAATCTGTT
1 TTCTTTTATTTTCTCTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAATCTGTT
** ** *
268025 ATAAACCAAATTAATATTTTCTACTATCTGAAGAAAGTTGGTAAGTTTCAATAACATGTAGTATT
66 ATAAACCAAATTCCTATTTTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAAT
* * *
268090 GGATAAATCTTTTGTTACAAATTTGAATTTTGATCGGTTTATAA
131 GGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAA
* * *
268134 TTCTTTTATTTTCTCTCTTGAAAAAAGATGGCCAGGAAACGGAGAATGCAAGAGAAGAATCTGTT
1 TTCTTTTATTTTCTCTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAATCTGTT
* * * * * *
268199 ATAAACCAAATTCCTATTTTTTATTGTCCGAATAAAGTTGTTAAGTTTCAATAACATGTAGTAAT
66 ATAAACCAAATTCCTATTTTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAAT
268264 GGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAA
131 GGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAA
* * * *
268308 TTATTTTATTTTCTCTCTTGACAAAAGATGGTCAGGAAACGGAGTATGCAGGAAAAGAATATGTT
1 TTCTTTTATTTTCTCTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAATCTGTT
* * * *
268373 ATAAACCAAATACCTATTCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACAAGTACTAAT
66 ATAAACCAAATTCCTATTTTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAAT
* * *
268438 GGATAAATCGTTTGTTACAAATTTAAATTTGGTTCGATCTATAA
131 GGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAA
* * *
268482 TTCTTTTATTTTTTCTCTTGAAAAAAGATGGTCAGGAAACAGAGTATGCAGGAAAAGAATCTGTT
1 TTCTTTTATTTTCTCTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAATCTGTT
* *
268547 ATAAACCAAATTCCTATTATT-TACTATCCAAAGAAAGTTGGTAAGTTTTGAGTAACATGTAGTA
66 ATAAACCAAATTCCTATT-TTCTACTATCCAAAGAAAGTTGGTAAG-TTTCAATAACATGTAGTA
* * *
268611 AT-GAT--ATATTTTGTTACAATTTTAAATTTGGATCGGTCTAAAA
129 ATGGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAA
* * * *
268654 TTCTTTTATTTTCTCT-TTGAAAAAAGATGGTAAGTAAACGGAGAAGGCATGAAAAGAATCTGTT
1 TTCTTTTATTTTCTCTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAATCTGTT
* *
268718 ATAAACCAAATTCCTA-TCTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACAT-TACTAAT
66 ATAAACCAAATTCCTATTTTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAAT
* * * *
268781 GGAT-AATCTTTTGTTACAAA-TTGAATTTTGATCGATTTATAA
131 GGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAA
* ** * *
268823 TTCTTTTATTTTCTCTCTTGAAAAATGATGGTCAGGAAAATAGAGAATGCGGGAAAAGAATATGT
1 TTCTTTTATTTTCTCTCTTGAAAAAAGATGGTCAGG-AAACGGAGAATGCAGGAAAAGAATCTGT
* * *
268888 TATAAAACCAAATT-ATATTTTCTACTATCCGAAGAAAGGTT-GTACGTTTCAATAAACATGTA
65 TAT-AAACCAAATTCCTATTTTCTACTATCCAAAGAAA-GTTGGTAAGTTTCAAT-AACATGTA
Statistics
Matches: 1340, Mismatches: 157, Indels: 30
0.88 0.10 0.02
Matches are distributed among these distances:
168 6 0.00
169 47 0.04
170 54 0.04
171 85 0.06
172 85 0.06
173 10 0.01
174 1034 0.77
175 19 0.01
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.36
Consensus pattern (174 bp):
TTCTTTTATTTTCTCTCTTGAAAAAAGATGGTCAGGAAACGGAGAATGCAGGAAAAGAATCTGTT
ATAAACCAAATTCCTATTTTCTACTATCCAAAGAAAGTTGGTAAGTTTCAATAACATGTAGTAAT
GGATAAATCTTTTGTTACAAATTTAAATTTGGATCGGTCTATAA
Done.