genome.fa.s3003.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003003.1 Hibiscus syriacus cultivar Beakdansim tig00006217_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50957

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3044--3116	37	2.0	37	92	5	123	20	15	8	56	1.64
8093--8809	199	3.6	197	84	4	872	31	15	13	39	1.86
11959--12899	201	4.9	199	84	10	1268	34	15	11	37	1.84
12346--12898	188	3.0	183	80	9	710	34	15	11	37	1.85
12316--12869	180	3.0	180	82	8	749	33	16	12	37	1.86
15942--15987	21	2.2	21	92	0	74	36	17	17	28	1.92
16657--16697	19	2.2	19	90	0	64	53	9	2	34	1.47
18699--18752	26	2.1	26	96	0	99	35	31	5	27	1.80
18974--19410	182	2.4	182	88	3	621	30	15	13	40	1.85
21498--21556	21	2.8	21	72	10	57	32	25	20	22	1.98
21544--21796	20	12.5	20	75	10	149	39	23	18	19	1.93
21605--21816	41	5.2	41	89	1	302	38	23	17	20	1.93
21544--21816	40	6.7	41	84	5	306	38	23	17	20	1.93
21605--21816	20	10.4	20	77	2	208	38	23	17	20	1.93
21869--21915	21	2.2	21	84	0	67	19	27	17	36	1.93
21911--21957	20	2.3	20	92	0	76	40	23	17	19	1.91
21911--21973	20	3.2	20	86	4	65	39	22	15	22	1.92
22974--23009	14	2.5	14	90	4	54	58	22	13	5	1.56
25114--25202	20	4.4	20	85	2	126	35	24	21	17	1.95
25114--25202	40	2.2	40	90	4	144	35	24	21	17	1.95
25258--25342	33	2.5	33	92	1	134	14	23	18	43	1.87
25455--25491	14	2.6	14	86	0	56	48	21	0	29	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27436--27504	20	3.5	20	89	0	93	36	21	20	21	1.95
27547--27655	19	5.7	19	77	7	105	14	18	20	46	1.83
27703--28081	94	4.0	93	96	1	668	47	18	12	21	1.82
29772--29827	20	2.8	20	81	10	78	41	21	23	14	1.89
29763--29851	40	2.5	33	80	12	97	44	20	22	12	1.84
29852--29959	20	5.5	19	85	3	108	11	17	21	50	1.77
29863--29959	20	4.8	20	83	8	117	11	18	19	50	1.77
30496--30707	20	10.5	20	72	12	166	20	18	23	37	1.94
30497--30707	40	5.2	41	88	1	302	20	18	23	37	1.94
30718--30770	20	2.5	22	87	6	74	15	13	24	47	1.81
30738--30892	42	3.8	42	70	16	103	19	18	23	38	1.93
30820--30873	20	2.7	19	75	8	63	16	18	31	33	1.93
31320--31367	23	2.1	23	88	0	69	35	6	20	37	1.78
31819--32249	182	2.4	182	89	2	654	28	15	12	44	1.82
32126--32695	112	5.1	112	90	1	880	25	13	14	46	1.81
33240--33343	31	3.4	31	82	5	122	33	14	6	45	1.71
33943--34002	31	2.0	31	86	3	86	31	23	20	25	1.98
39371--39959	55	10.7	55	86	2	740	31	23	16	27	1.97
39374--39959	165	3.6	165	89	1	865	31	23	17	27	1.97
41227--41313	45	1.9	45	83	0	111	19	28	12	39	1.88
41315--41455	7	18.5	8	78	15	108	9	14	0	75	1.03
41321--41454	15	8.9	14	71	22	85	9	14	0	75	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41366--41423	23	2.6	22	78	10	64	12	13	0	74	1.08
41315--41423	45	2.5	42	83	11	114	10	14	0	75	1.05
41402--41456	9	6.6	9	76	23	66	9	10	0	80	0.92
41357--41447	24	4.0	22	71	13	62	10	12	0	76	1.01

Tables:   1

The End!