Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003004.1 Hibiscus syriacus cultivar Beakdansim tig00006218_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79002

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
699--747
15
3.4
14
78
10
53
79
8
12
0
0.93
732--806
24
3.2
22
78
10
69
74
8
16
1
1.11
1419--1468
22
2.2
23
82
7
66
30
24
16
30
1.96
1883--1918
18
2.0
18
88
0
54
19
8
30
41
1.81
2446--2567
36
3.4
36
83
5
140
24
22
14
38
1.92
2543--2699
68
2.4
68
84
5
196
31
23
8
35
1.86
3342--4275
105
9.0
105
92
2
1463
34
26
17
22
1.96
3347--4275
312
3.0
312
92
2
1428
33
26
17
22
1.96
4820--4921
34
2.9
36
91
5
172
44
13
14
27
1.83
5490--5524
16
2.1
18
89
10
56
25
8
0
65
1.21
8315--8450
60
2.2
61
83
6
170
44
2
20
32
1.67
33537--33608
29
2.5
29
97
0
135
45
9
29
15
1.78
35198--35226
12
2.4
12
100
0
58
48
0
37
13
1.43
44127--44184
11
5.5
10
91
6
71
3
72
0
24
1.00
44131--44190
16
3.9
14
75
14
57
3
71
0
25
1.01
44127--44186
10
5.7
10
92
5
75
3
73
0
23
0.98
44318--44375
11
5.5
10
91
6
71
3
72
0
24
1.00
44322--44381
16
3.9
14
75
14
57
3
71
0
25
1.01
44318--44377
10
5.7
10
92
5
75
3
73
0
23
0.98
44076--44457
191
2.0
191
100
0
764
28
37
10
22
1.88
45805--45850
24
1.9
24
82
8
58
71
6
2
19
1.18
47615--47686
30
2.6
27
72
14
65
38
13
4
43
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47626--47703
30
2.6
30
71
6
77
41
19
3
35
1.70
50182--50242
16
3.9
16
97
2
115
39
19
21
19
1.93
57609--57700
14
6.4
14
75
14
64
26
4
2
67
1.21
62062--62097
19
1.9
18
88
5
54
47
2
19
30
1.64
63645--63697
9
5.6
9
77
20
54
84
0
15
0
0.61
63646--63694
15
3.3
15
91
0
80
83
0
16
0
0.64
63645--63697
25
2.2
24
86
3
70
84
0
15
0
0.61
66233--66331
22
4.6
22
91
2
148
35
16
12
36
1.85
66979--68010
86
12.0
85
88
2
1210
27
23
20
28
1.99
66982--68010
300
3.4
300
86
2
1316
27
23
20
28
1.99
67925--68162
132
1.8
132
88
0
368
29
18
18
33
1.95
68057--68141
42
2.0
42
83
0
107
25
22
20
31
1.98
69317--69368
26
2.0
26
100
0
104
3
11
34
50
1.57
69839--69902
33
1.9
33
93
6
112
21
7
3
67
1.31
69919--69970
14
3.8
13
82
9
61
25
3
1
69
1.16
69953--70011
15
3.8
15
74
14
57
25
3
0
71
1.02
69956--70041
22
3.8
21
73
10
55
22
4
2
70
1.16
70067--70097
2
15.5
2
93
0
53
45
0
3
51
1.17
71386--71480
46
2.1
46
100
0
190
21
20
29
29
1.98

Tables:   1

The End!