genome.fa.s3005.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003005.1 Hibiscus syriacus cultivar Beakdansim tig00006222_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84685

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3209--3256	25	2.0	24	84	12	62	50	2	0	47	1.12
10399--10431	16	2.0	17	88	5	50	33	18	9	39	1.82
14151--14180	14	2.1	14	100	0	60	0	73	0	26	0.84
17518--17608	31	2.9	30	88	4	128	49	19	2	28	1.60
19112--19155	23	1.9	23	85	0	61	34	20	2	43	1.64
22133--22168	19	1.9	18	88	5	54	80	0	5	13	0.88
23117--23153	2	18.5	2	100	0	74	51	0	0	48	1.00
23642--24168	106	5.0	106	91	2	774	23	19	23	33	1.97
24235--24340	37	2.9	37	88	5	169	40	16	19	23	1.91
24282--24455	90	1.9	90	88	4	262	41	12	17	29	1.85
24444--24502	30	2.0	30	86	6	84	32	11	18	37	1.87
24489--24656	36	4.8	36	69	16	129	41	12	20	26	1.87
24457--24749	105	2.8	103	92	4	466	37	12	19	30	1.89
24586--24656	37	1.9	37	85	0	97	43	11	21	23	1.84
26020--26373	183	1.9	183	95	0	636	29	21	21	27	1.98
31830--31866	2	18.5	2	100	0	74	51	0	0	48	1.00
35366--35411	24	1.9	24	90	0	74	28	28	10	32	1.91
39403--39465	33	1.9	32	81	9	74	12	19	3	65	1.40
41363--41418	29	1.9	29	85	0	76	48	33	8	8	1.66
42946--43052	41	2.6	41	78	8	119	23	20	19	36	1.95
47912--47969	21	2.7	21	86	7	73	58	0	3	37	1.15
47912--47979	3	22.3	3	76	8	57	57	0	2	39	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48286--48582	84	3.5	84	82	0	342	23	20	22	32	1.98
48586--48822	123	1.9	123	89	1	368	27	18	22	32	1.97
48602--48858	123	2.1	122	84	5	322	26	17	23	31	1.97
48882--49293	110	3.6	111	72	16	379	24	18	23	33	1.97
48707--49468	240	3.1	238	88	3	1042	25	17	23	32	1.97
49003--49420	130	3.4	127	71	16	408	25	18	23	32	1.97
62875--62918	21	2.1	21	83	8	54	25	18	18	38	1.92
64458--64503	20	2.3	19	85	14	58	50	8	15	26	1.73
66720--66779	3	20.0	3	77	13	52	60	0	1	38	1.07
76476--76515	17	2.4	17	87	8	55	45	7	2	45	1.45
77642--77688	22	2.1	23	84	7	62	63	4	4	27	1.31
83963--84003	20	2.0	20	85	4	55	41	9	26	21	1.84

Tables:   1

The End!