Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003007.1 Hibiscus syriacus cultivar Beakdansim tig00006231_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75361

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8122--8291
20
8.7
20
74
14
72
24
16
32
25
1.96
8164--8202
17
2.3
18
86
8
55
25
15
23
35
1.94
8240--8293
19
2.7
21
88
5
85
24
18
37
20
1.94
8361--8423
30
2.1
29
85
11
83
49
12
6
31
1.66
8372--8429
30
2.0
29
96
3
107
44
12
5
37
1.64
11473--11512
21
1.9
21
90
10
64
12
10
42
35
1.76
11612--11721
8
15.1
7
67
24
52
24
17
29
29
1.97
11731--11807
21
3.7
21
92
0
127
25
18
33
22
1.96
12389--12451
30
2.1
29
85
11
83
49
12
6
31
1.66
12400--12458
30
2.0
29
93
3
100
44
13
6
35
1.71
11730--12720
513
1.9
513
95
1
1799
34
18
12
33
1.89
13125--13187
3
22.0
3
79
12
62
34
1
0
63
1.04
14463--14506
20
2.2
20
84
8
54
36
4
0
59
1.18
14620--14650
2
15.5
2
100
0
62
51
0
0
48
1.00
18750--18781
15
2.1
15
94
0
55
25
15
6
53
1.65
25700--25842
65
2.2
65
76
9
150
30
22
16
30
1.96
33007--33046
21
1.9
21
89
0
62
25
40
25
10
1.86
41203--41308
44
2.4
44
87
7
153
27
20
20
31
1.98
41784--41818
13
2.7
13
100
0
70
40
14
0
45
1.45
43555--43584
12
2.4
13
94
5
53
50
10
6
33
1.62
43938--44057
65
1.9
63
84
6
161
30
20
16
31
1.95
45258--45309
20
2.5
20
84
12
61
76
0
21
1
0.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45265--45305
15
2.6
15
92
7
64
78
0
19
2
0.87
45653--45693
21
1.9
22
85
14
59
29
14
4
51
1.63
45942--45975
17
1.9
17
88
5
50
50
14
14
20
1.78
46177--46240
17
3.2
20
65
20
53
42
10
21
25
1.85
46158--46608
123
3.7
123
87
1
651
40
17
17
24
1.90
47001--47041
14
2.9
14
85
7
57
31
0
2
65
1.05
47003--47041
20
2.0
20
94
0
69
33
0
2
64
1.08
47006--47038
17
1.9
17
93
0
57
33
0
3
63
1.10
47002--47041
3
14.0
3
84
10
57
32
0
2
65
1.06
48488--48528
2
20.5
2
100
0
82
51
0
0
48
1.00
49138--49170
2
16.5
2
93
0
57
48
3
0
48
1.17
49213--49254
19
2.3
19
79
4
50
26
4
0
69
1.08
49286--49325
20
2.0
21
85
5
55
40
2
0
57
1.12
58081--58107
14
1.9
14
100
0
54
40
0
0
59
0.98
58448--58489
18
2.3
19
91
4
68
42
0
4
52
1.22
62575--62616
22
1.9
22
90
0
66
45
2
0
52
1.13
62816--62987
91
1.9
89
79
9
190
50
4
0
45
1.20
62965--63024
22
2.7
22
78
2
57
51
0
3
45
1.17
63155--63201
14
3.4
14
93
0
76
38
12
12
36
1.82
63162--63209
14
3.4
14
82
8
53
41
12
16
29
1.85
63325--63369
18
2.5
18
88
0
72
33
11
28
26
1.91
68149--68236
46
1.9
46
92
0
149
35
7
31
25
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68292--68765
4
118.2
4
68
19
109
35
0
63
1
1.07
68342--68707
2
188.5
2
70
8
157
37
0
59
2
1.12
68342--68751
99
3.7
114
70
21
269
36
0
61
1
1.10
68292--68765
16
30.3
16
69
18
232
35
0
63
1
1.07
70847--70963
26
4.2
28
73
21
111
17
27
37
17
1.92
70949--70990
18
2.3
18
87
4
57
21
33
33
11
1.90
71469--71516
21
2.3
20
82
7
60
31
0
16
52
1.45
71900--71926
14
1.9
14
100
0
54
7
3
14
74
1.18
71897--71929
17
1.9
17
88
11
50
9
3
15
72
1.21
75165--75346
59
3.1
59
92
3
307
42
0
12
45
1.42

Tables:   1

The End!