genome.fa.s3008.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003008.1 Hibiscus syriacus cultivar Beakdansim tig00006232_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96809

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1046--1106	27	2.3	27	97	0	113	42	13	6	37	1.70
6319--6403	23	3.7	23	95	1	143	21	27	27	24	1.99
6513--6594	2	41.0	2	100	0	164	50	0	0	50	1.00
8326--8352	2	13.5	2	100	0	54	51	0	0	48	1.00
8338--8406	35	1.9	36	94	2	122	52	2	4	40	1.36
8385--8461	19	3.7	19	73	21	73	46	0	11	41	1.40
8379--8467	45	2.0	45	93	0	151	44	1	11	42	1.47
8404--8455	26	2.0	26	81	7	61	42	0	11	46	1.40
8375--8496	45	2.7	44	84	5	138	46	1	9	41	1.47
8529--8565	16	2.2	17	95	4	67	32	0	0	67	0.91
12823--12847	13	1.9	13	100	0	50	68	0	0	32	0.90
17282--17322	19	2.2	19	86	0	55	34	9	7	48	1.64
17985--18035	20	2.5	20	96	0	93	43	21	15	19	1.88
20115--20169	3	18.7	3	96	3	103	34	0	0	65	0.93
20211--20397	3	63.7	3	82	6	231	35	4	0	59	1.23
21793--21835	21	2.0	22	86	4	61	16	18	37	27	1.92
21814--21870	28	2.0	28	93	0	96	19	14	40	26	1.89
23021--23047	9	3.0	9	100	0	54	33	22	0	44	1.53
23668--23693	12	2.2	12	100	0	52	11	15	46	26	1.80
23727--23802	30	2.6	30	87	2	100	22	35	9	32	1.86
25567--25621	15	3.4	16	75	20	53	30	3	12	52	1.56
28617--28770	71	2.2	71	98	0	299	50	1	9	38	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29625--29664	17	2.4	17	91	0	62	40	12	12	35	1.81
32863--32909	23	2.0	23	83	0	58	19	21	10	48	1.78
34010--34047	14	2.8	14	92	4	60	7	5	39	47	1.55
34567--34609	19	2.3	19	100	0	86	30	13	0	55	1.39
35227--35299	3	24.3	3	100	0	146	0	32	0	67	0.91
42496--42525	13	2.3	13	94	0	51	53	10	3	33	1.51
47229--47406	89	2.0	89	100	0	356	24	17	20	37	1.94
49258--49460	2	99.5	2	82	9	250	48	1	1	47	1.24
49558--49617	11	5.5	11	81	0	75	53	1	3	41	1.27
49558--49617	22	2.7	22	97	0	111	53	1	3	41	1.27
49519--49627	42	2.6	39	75	16	92	49	4	3	42	1.41
49997--50417	2	201.0	2	63	25	83	43	5	4	46	1.48
49984--50088	27	4.2	25	73	16	83	49	3	1	44	1.31
49998--50088	9	10.0	9	69	24	50	48	3	2	46	1.31
50153--50264	9	11.9	9	68	25	63	43	7	2	46	1.45
50317--50410	27	3.5	27	97	0	161	39	5	6	48	1.51
50295--50424	54	2.4	54	77	12	158	41	5	4	48	1.46
50339--50432	7	13.7	7	74	14	56	40	4	4	51	1.41
50413--50441	15	1.9	15	100	0	58	41	6	0	51	1.28
50511--50555	18	2.5	19	86	13	60	40	6	6	46	1.56
50582--50695	18	6.3	18	74	15	101	44	3	8	42	1.52
50559--50597	13	3.0	13	84	0	51	53	5	5	35	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50569--50713	33	4.3	34	78	16	149	45	4	8	42	1.53
50796--50859	24	2.9	21	82	13	58	46	6	9	37	1.61
50817--50875	24	2.5	24	97	2	111	44	8	11	35	1.72
50781--50936	85	1.8	84	89	4	242	47	7	9	35	1.65
51027--51065	21	1.9	20	84	5	51	10	17	2	69	1.28
51340--51368	10	2.9	10	100	0	58	17	31	10	41	1.83
51677--51798	6	20.2	6	74	5	84	45	41	4	7	1.53
51694--51810	12	9.7	13	71	18	76	46	40	5	8	1.57
51748--51798	25	2.0	25	88	0	75	43	43	7	5	1.57
54427--54507	20	4.1	20	81	0	99	16	11	17	55	1.68
54600--54652	23	2.3	23	90	0	79	24	11	26	37	1.89
55190--55228	13	2.9	13	82	17	53	61	0	2	35	1.10
55207--55252	19	2.5	18	82	6	56	56	0	10	32	1.34
55244--55301	18	3.1	19	76	18	75	56	6	0	36	1.26
61384--61466	3	27.7	3	97	0	148	36	0	0	63	0.94
63584--63634	18	2.9	17	72	18	50	25	0	1	72	0.95
63625--63661	15	2.7	15	88	12	53	24	5	8	62	1.44
74249--74315	5	13.6	5	72	20	52	79	0	16	4	0.90
74244--74311	14	5.0	13	81	15	75	79	0	16	4	0.89
74244--74311	28	2.5	28	85	7	86	79	0	16	4	0.89
75433--75753	133	2.4	133	94	0	552	29	14	19	36	1.91
76434--77086	113	5.7	113	93	2	1045	36	13	20	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77381--77464	3	28.7	3	87	4	127	33	0	0	66	0.92
79842--80119	141	2.0	137	95	2	493	46	4	8	41	1.54
80095--80169	35	2.2	34	90	2	114	34	5	14	45	1.68
87186--87260	36	2.1	37	85	9	102	32	18	26	22	1.97
87876--87967	21	4.4	21	74	10	80	25	13	22	39	1.90
88012--88064	23	2.3	23	90	0	79	15	28	24	32	1.95

Tables:   1

The End!