genome.fa.s3009.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003009.1 Hibiscus syriacus cultivar Beakdansim tig00006233_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  139586

Tables:   1   

This is table  1  of  1  ( 96 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
463--497	14	2.5	14	90	9	54	40	0	5	54	1.24
443--515	35	2.1	35	85	10	96	43	0	5	50	1.25
8292--8339	19	2.5	19	93	0	87	20	20	16	41	1.90
8330--8405	22	3.5	22	96	0	143	15	18	28	36	1.92
9028--9065	6	6.5	6	96	3	69	0	15	52	31	1.43
11698--11772	11	6.6	11	70	17	55	45	1	2	50	1.24
11705--11761	26	2.2	26	84	6	71	43	1	3	50	1.29
12313--12371	31	1.9	31	86	6	84	52	1	5	40	1.33
12341--12404	27	2.4	27	86	5	85	53	0	4	42	1.22
12362--12424	27	2.6	25	85	12	78	53	0	3	42	1.16
12365--12429	25	2.6	25	75	18	71	52	0	3	44	1.16
12362--12450	27	3.5	25	76	16	76	51	1	4	42	1.29
18394--18426	14	2.4	14	85	14	50	51	0	6	42	1.26
18397--18426	15	2.1	15	93	6	53	53	0	6	40	1.27
18627--18666	21	1.9	21	89	0	62	55	10	7	27	1.60
19173--19300	37	3.6	36	86	5	170	27	18	10	43	1.82
19173--19324	55	2.9	53	81	10	170	26	18	9	44	1.81
19173--19292	18	6.7	18	84	7	163	28	18	9	44	1.80
27910--27945	9	4.3	9	83	16	51	50	0	0	50	1.00
49207--49259	19	2.6	22	80	17	69	69	7	3	18	1.28
49340--49410	2	35.5	2	100	0	142	50	0	0	49	1.00
51295--51590	45	6.6	45	79	4	258	21	18	24	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51306--51590	135	2.1	134	82	4	351	20	18	24	36	1.95
56568--56702	21	6.4	21	68	19	59	62	0	4	31	1.20
56606--56652	19	2.5	19	85	0	58	55	0	4	40	1.19
57400--57501	37	2.8	37	86	0	132	31	13	14	40	1.85
60561--60618	20	2.7	21	84	7	64	58	3	0	37	1.15
72666--72707	3	14.0	3	100	0	84	66	0	33	0	0.92
79469--79535	26	2.5	27	95	2	118	55	8	8	26	1.61
79469--79550	26	3.2	25	89	5	85	56	8	10	24	1.62
79752--79802	21	2.4	21	83	3	75	27	23	15	33	1.95
79812--79988	20	8.9	20	88	0	246	40	24	15	19	1.91
80100--80150	22	2.3	22	89	0	84	19	43	15	21	1.88
80560--80607	20	2.5	19	83	6	60	14	18	22	43	1.87
82768--82866	21	4.7	21	75	14	96	24	34	19	22	1.96
84093--84148	24	2.3	23	90	3	85	23	1	30	44	1.63
84237--84412	66	2.6	65	86	8	239	28	2	16	52	1.58
85519--85555	18	2.1	18	89	0	56	51	10	5	32	1.60
85932--85981	25	2.0	25	92	0	82	46	22	6	26	1.74
86061--86154	34	2.8	34	95	0	161	38	19	23	19	1.93
86124--86172	20	2.5	20	72	0	53	28	20	26	24	1.99
86215--86256	20	2.1	20	90	0	66	16	19	21	42	1.89
86542--86577	18	2.0	18	94	0	63	16	2	25	55	1.55
88834--88887	24	2.2	24	96	0	99	42	20	16	20	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88834--88901	24	2.8	24	86	0	73	39	20	16	23	1.91
89013--89046	12	2.8	12	90	0	50	14	0	29	55	1.40
89848--89962	20	5.8	20	76	8	108	21	13	24	40	1.90
91012--91114	15	6.5	15	80	15	118	44	0	2	52	1.16
91094--91245	32	5.4	31	70	28	142	36	0	9	52	1.40
91117--91159	22	2.0	22	95	0	77	37	0	11	51	1.39
91012--91169	69	2.3	67	88	6	230	42	0	5	51	1.25
91094--92196	54	20.4	54	76	14	976	33	0	12	52	1.43
91057--91532	134	3.6	131	79	12	550	34	0	12	52	1.42
91197--91584	80	4.8	79	79	9	437	33	0	13	52	1.45
91352--91973	32	20.7	32	66	24	265	33	0	13	52	1.45
91439--91481	22	2.0	22	100	0	86	34	0	13	51	1.42
91650--91697	22	2.4	18	73	23	51	33	0	14	52	1.42
91461--92181	80	8.9	80	80	10	711	33	0	13	52	1.44
91730--91777	22	2.4	18	73	23	51	33	0	14	52	1.42
91810--91857	22	2.4	18	73	23	51	33	4	10	52	1.55
91819--91909	22	4.0	22	79	10	101	31	2	14	51	1.54
91898--91950	14	3.5	14	72	18	52	37	0	5	56	1.23
91995--92085	32	2.8	32	94	0	155	35	0	10	53	1.36
92024--92080	18	3.4	18	69	18	59	33	0	12	54	1.38
91889--92164	112	2.5	112	93	2	475	34	0	11	53	1.41
92144--92186	22	2.0	22	100	0	86	34	0	13	51	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92211--92268	31	1.9	31	85	3	82	41	8	6	43	1.62
94112--94180	31	2.2	31	97	0	129	27	8	8	55	1.60
94112--94189	31	2.5	31	91	4	113	26	10	10	52	1.67
95801--95852	21	2.5	21	93	0	86	30	1	23	44	1.64
106524--106660	64	2.2	63	80	6	143	24	24	18	32	1.97
115067--115118	24	2.2	24	100	0	104	42	3	7	46	1.51
115940--116024	35	2.4	36	76	13	102	43	23	1	31	1.61
127574--127613	17	2.5	15	88	8	53	52	2	0	45	1.14
127663--127704	16	2.6	16	88	0	66	42	11	7	38	1.69
127731--127919	11	15.5	11	70	22	85	47	8	1	41	1.44
127735--127795	24	2.5	23	86	7	77	44	8	3	44	1.50
127736--127844	52	2.2	49	83	5	128	45	10	1	42	1.48
127821--127865	21	2.1	22	88	12	67	55	6	0	37	1.26
127841--127928	40	2.2	40	77	18	96	51	7	1	39	1.39
127914--127967	27	2.0	27	82	13	67	37	3	7	51	1.48
128044--128087	23	2.0	23	86	4	63	45	9	11	34	1.72
128067--128108	16	2.6	16	88	0	66	42	11	7	38	1.69
128135--128340	11	16.7	11	70	21	92	44	10	1	43	1.49
128139--128251	24	4.5	23	76	15	82	43	10	2	43	1.53
128174--128248	14	5.6	14	72	20	54	44	13	2	40	1.58
128181--128300	52	2.3	52	95	0	213	43	12	1	42	1.52
128277--128321	21	2.1	22	88	12	67	53	8	0	37	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128328--128373	17	2.8	16	93	6	83	50	13	0	36	1.41
128383--128517	42	3.1	41	74	15	96	48	10	0	40	1.42
132346--132462	50	2.4	50	80	10	138	52	9	0	37	1.40
132420--132482	28	2.2	30	94	5	112	57	12	0	30	1.36
132424--132489	28	2.4	28	87	10	107	56	12	0	31	1.36
132459--132507	21	2.3	21	85	3	71	53	16	0	30	1.43
132709--132780	22	3.0	24	86	10	103	30	12	26	30	1.93
138732--138787	27	2.1	27	100	0	112	30	30	7	32	1.84

Tables:   1

The End!