Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000301.1 Hibiscus syriacus cultivar Beakdansim tig00000555_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102180

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1907--1952
12
3.6
12
81
16
56
17
19
17
45
1.85
1906--1945
15
2.9
14
85
14
57
20
17
15
47
1.83
3028--3076
22
2.2
23
96
3
91
44
20
22
12
1.84
4332--4371
21
1.9
21
84
0
53
30
27
25
17
1.97
29157--29267
44
2.5
44
84
7
145
31
22
18
27
1.97
29747--29784
13
3.0
13
88
3
60
34
13
7
44
1.72
31200--31244
13
2.9
16
75
25
51
13
0
26
60
1.34
31177--31244
31
2.2
31
89
7
102
16
0
25
58
1.38
31538--31570
12
2.6
13
85
9
50
42
9
6
42
1.61
31785--31930
65
2.3
65
84
5
181
28
21
18
30
1.97
33040--33176
45
3.0
45
86
6
195
35
15
10
39
1.81
33185--33240
22
2.5
22
80
5
69
46
8
12
32
1.73
36959--37003
23
2.0
23
86
0
63
22
26
31
20
1.98
42438--42506
23
3.0
23
77
8
77
28
24
24
21
1.99
46329--46435
47
2.3
47
81
1
115
34
15
14
34
1.89
46249--46484
130
1.8
129
84
2
321
36
14
15
33
1.88
53462--53546
31
2.9
28
75
10
98
43
5
1
49
1.34
53838--53915
2
39.0
2
97
0
147
50
0
1
48
1.09
56279--56316
19
2.0
19
85
10
51
31
0
2
65
1.06
56713--56755
20
2.2
20
91
0
68
32
11
20
34
1.89
65336--65370
15
2.3
15
100
0
70
34
34
11
20
1.88
77919--77946
4
7.0
4
100
0
56
25
0
0
75
0.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79235--79272
18
2.0
20
90
10
62
50
0
0
50
1.00
80560--80619
19
3.2
19
95
0
102
33
16
8
41
1.78
87562--87601
21
1.9
21
84
0
53
32
27
20
20
1.97
87623--87663
21
2.0
21
95
0
73
26
24
24
24
2.00
89848--89896
24
2.0
24
100
0
98
71
8
0
20
1.11
93801--93843
17
2.5
17
84
3
50
44
11
9
34
1.73
95423--95475
22
2.4
22
93
0
97
41
7
22
28
1.81
95685--95729
21
2.1
21
95
0
81
22
6
20
51
1.70
95965--96197
119
2.0
116
90
2
367
24
16
29
30
1.96
100493--100566
35
2.1
36
87
7
107
50
0
2
47
1.15

Tables:   1

The End!