Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003010.1 Hibiscus syriacus cultivar Beakdansim tig00006235_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61296

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5088--5163
34
2.2
33
88
4
107
46
15
22
15
1.84
7329--7436
30
3.6
29
78
9
101
2
10
25
61
1.42
14898--15064
83
2.0
83
94
0
289
34
15
15
34
1.89
19510--19567
21
2.8
21
78
5
64
20
22
10
46
1.81
22265--22329
3
21.7
3
81
12
80
35
0
0
64
0.94
22265--22317
24
2.2
24
96
0
97
32
0
0
67
0.91
23666--23697
3
10.7
3
93
0
55
31
3
0
65
1.08
23891--23933
20
2.2
20
86
0
59
32
0
2
65
1.06
24517--24574
28
2.1
27
84
6
73
32
6
1
58
1.35
26192--26231
6
6.7
6
85
0
53
25
15
7
52
1.68
26192--26231
12
3.3
12
100
0
80
25
15
7
52
1.68
26205--26261
28
2.0
28
86
0
78
17
12
7
63
1.50
28213--28254
2
21.0
2
100
0
84
50
0
0
50
1.00
28549--28619
18
4.4
16
75
21
69
77
0
22
0
0.77
28553--28651
7
14.4
7
76
10
71
79
2
18
0
0.82
28574--28650
6
12.8
6
81
12
70
80
2
16
0
0.82
30908--31355
114
3.9
114
96
0
815
33
14
19
31
1.92
32306--32544
109
2.2
109
96
0
433
33
16
20
30
1.94
32821--33001
91
2.0
91
93
0
308
38
15
20
24
1.92
33932--34917
225
4.3
228
85
8
1334
37
13
19
29
1.90
33903--35165
453
2.7
453
84
8
1479
38
14
18
28
1.89
34473--35190
124
5.9
124
81
9
831
40
14
17
26
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35388--35434
3
15.7
3
82
8
60
36
0
0
63
0.94
36728--36762
3
11.7
3
93
0
61
31
2
0
65
1.07
39712--39750
18
2.3
18
86
8
55
12
23
20
43
1.86
41403--41829
235
1.8
227
84
4
577
27
19
21
32
1.97
54102--54206
47
2.2
47
93
0
174
22
15
24
37
1.93
55206--55269
33
2.0
33
96
3
121
31
37
6
25
1.81

Tables:   1

The End!