genome.fa.s3011.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003011.1 Hibiscus syriacus cultivar Beakdansim tig00006239_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  127151

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54--348	41	7.2	41	78	4	256	34	20	17	27	1.95
54--348	83	3.6	83	83	6	361	34	20	17	27	1.95
223--341	40	3.0	40	82	3	132	35	19	15	29	1.93
10562--10621	23	2.6	23	97	0	111	33	46	0	20	1.51
10717--10757	18	2.3	18	87	4	57	29	7	2	60	1.36
15372--15422	22	2.4	22	86	3	77	25	0	0	74	0.82
15376--15422	21	2.2	22	88	7	71	23	0	0	76	0.78
16226--16277	11	5.0	11	78	19	58	71	3	0	25	1.03
16226--16260	10	3.4	10	92	7	61	80	0	0	20	0.72
17519--17558	10	3.9	10	83	6	53	25	5	2	67	1.23
17513--17569	21	2.7	21	73	10	53	24	3	5	66	1.28
17500--17576	11	7.5	10	76	9	57	22	2	5	70	1.20
24716--24798	12	6.8	12	69	21	57	65	4	2	27	1.26
28046--28096	22	2.4	22	90	3	86	19	31	23	25	1.98
28512--28569	29	2.0	29	86	6	82	34	18	0	46	1.50
28848--28886	18	2.2	17	95	4	69	33	33	15	17	1.92
29898--29936	20	2.0	20	85	10	53	25	33	28	12	1.93
31173--31248	27	2.9	27	78	9	77	32	0	3	63	1.13
31204--31253	16	3.3	16	81	8	52	34	0	0	66	0.92
33489--33578	34	2.6	34	77	6	101	22	3	8	65	1.36
37291--37355	23	2.8	23	85	0	94	26	24	27	21	1.99
37362--37585	103	2.2	100	89	4	340	36	22	13	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47413--47453	2	20.5	2	100	0	82	48	0	0	51	1.00
47626--47939	39	7.9	39	79	11	272	44	3	5	45	1.45
52647--52687	20	2.0	21	85	4	57	46	7	21	24	1.77
52795--52838	21	2.1	21	91	0	70	29	0	13	56	1.38
54445--54568	31	4.0	31	76	5	124	33	17	18	30	1.94
54445--54566	63	2.0	62	86	4	174	31	18	18	31	1.95
57325--57414	30	3.0	30	78	3	92	34	25	20	20	1.96
57383--57507	31	4.0	31	79	5	117	32	20	17	29	1.95
58202--58245	2	22.0	2	100	0	88	50	0	0	50	1.00
62048--62091	21	2.1	21	91	0	70	56	13	0	29	1.38
62199--62240	21	2.0	21	85	0	57	23	21	7	47	1.75
64256--64314	22	2.7	22	84	2	75	25	3	18	52	1.61
66256--66345	31	2.8	32	79	5	110	51	7	21	20	1.72
66256--66339	33	2.6	33	83	3	109	52	7	21	19	1.69
67677--67737	30	2.0	30	96	0	113	40	8	19	31	1.81
74850--74965	56	2.1	56	98	0	223	31	8	6	54	1.55
81070--81111	12	3.6	12	90	3	68	64	0	0	35	0.94
81070--81114	14	3.5	14	82	17	62	64	0	0	35	0.94
81074--81126	26	2.0	26	82	7	63	64	0	5	30	1.17
83145--83840	103	6.8	103	93	4	1151	22	18	25	33	1.97
83145--83840	208	3.4	208	94	2	1180	22	18	25	33	1.97
83145--83840	105	6.8	105	93	3	1168	22	18	25	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91223--91297	37	2.0	37	100	0	150	26	32	13	28	1.94
95081--95129	22	2.2	23	88	3	73	69	4	12	14	1.33
95286--95329	21	2.0	22	82	4	54	68	0	4	27	1.09
95585--95634	3	16.7	3	77	22	52	66	0	0	34	0.92
95585--95634	15	3.3	15	97	0	91	66	0	0	34	0.92
95585--95633	12	3.8	13	84	15	66	65	0	0	34	0.93
96544--96576	15	2.2	15	89	10	50	78	0	0	21	0.75
98485--98520	3	11.7	3	94	5	63	63	0	0	36	0.94
98477--98522	19	2.5	19	93	6	78	60	0	0	39	0.97
98747--98940	88	2.2	88	89	1	300	26	17	19	37	1.93
98747--98891	46	3.2	46	66	18	133	26	18	17	36	1.94
110239--110295	20	2.7	20	83	10	69	28	21	22	28	1.99
110348--110399	19	2.7	19	100	0	104	23	34	17	25	1.96
114142--114199	30	1.9	30	92	0	98	43	3	20	32	1.69
114446--114516	24	3.0	23	75	17	65	22	25	21	30	1.98
114981--115024	21	2.1	21	91	0	70	27	22	25	25	2.00
121143--121205	30	2.1	30	96	0	117	38	4	23	33	1.76
121459--121529	23	3.0	23	73	18	74	18	26	23	30	1.97
121461--121533	24	3.1	23	74	16	69	19	26	23	31	1.98
121996--122038	21	2.2	20	91	8	70	23	25	27	23	2.00
122099--122142	12	3.7	12	84	0	52	13	22	25	38	1.91
123674--123702	15	1.9	15	100	0	58	27	13	20	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123944--123980	18	2.0	19	89	5	58	2	16	35	45	1.61
124452--124486	14	2.5	14	100	0	70	65	5	22	5	1.36

Tables:   1

The End!