genome.fa.s3013.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003013.1 Hibiscus syriacus cultivar Beakdansim tig00006242_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71794

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2618--2663	13	3.3	14	77	19	51	15	2	0	82	0.76
2612--2661	17	3.0	16	88	8	73	16	2	0	82	0.77
2612--2675	32	2.0	33	84	3	85	20	3	0	76	0.92
2664--2708	2	23.5	2	80	17	51	44	4	0	51	1.21
2664--2717	21	2.5	22	82	5	58	42	3	3	50	1.38
2747--2830	18	4.4	19	70	14	64	27	4	1	66	1.19
2747--2833	40	2.2	40	86	10	117	27	4	1	66	1.18
2811--2935	40	3.1	38	70	18	92	22	4	2	71	1.15
2976--3014	19	2.1	19	90	0	60	12	15	0	71	1.14
3547--3582	17	2.1	18	94	5	65	55	11	16	16	1.68
4727--5010	20	14.9	20	77	9	245	22	19	21	36	1.95
4683--4909	73	3.0	73	83	6	240	22	18	21	37	1.94
4833--4979	54	2.6	56	82	8	165	22	21	19	36	1.95
5185--5219	18	1.9	18	94	0	61	17	2	25	54	1.57
7456--7509	24	2.2	24	93	0	90	40	20	18	20	1.91
8325--8516	20	9.4	20	74	9	120	29	19	23	27	1.98
8325--8458	60	2.2	59	77	7	144	25	20	22	31	1.98
8320--8458	40	3.5	40	85	3	172	25	20	21	31	1.98
9876--9966	2	47.5	2	71	16	59	46	5	1	47	1.33
13642--13677	17	2.1	17	89	0	54	58	2	8	30	1.42
15668--15731	6	11.0	6	80	6	78	31	15	35	17	1.91
15671--15713	11	3.8	11	81	6	59	30	16	39	13	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15668--15726	23	2.6	23	94	0	100	30	15	37	16	1.90
19182--19274	21	4.6	20	79	4	105	39	18	23	18	1.92
19179--19274	41	2.3	41	96	0	174	40	17	22	18	1.91
19201--19335	41	3.3	41	81	6	123	38	20	20	20	1.94
19263--19357	20	4.7	20	80	2	91	34	24	17	23	1.96
19545--19588	22	2.0	22	90	0	70	22	45	13	18	1.84
19852--19889	20	1.9	20	88	0	58	13	15	21	50	1.78
21208--21252	18	2.5	18	85	0	63	26	42	15	15	1.87
21725--21791	20	3.4	20	81	2	73	38	23	22	14	1.92
21780--21837	14	3.9	14	79	16	71	48	25	17	8	1.75
21764--21854	32	2.8	33	94	3	166	47	23	18	10	1.80
21725--21859	19	7.6	19	71	19	85	42	23	20	12	1.86
21855--21932	19	4.4	19	82	14	96	7	16	28	47	1.74
21890--21947	14	3.9	14	79	16	71	8	17	25	48	1.75
21871--21963	32	2.8	32	90	3	141	9	18	25	46	1.79
21871--21963	33	2.8	32	91	3	141	9	18	25	46	1.79
21866--22021	19	8.7	19	76	14	102	11	19	25	43	1.84
21948--22002	20	2.8	19	89	5	83	16	25	23	34	1.95
23866--23901	14	2.6	14	90	0	54	30	0	22	47	1.52
24018--24063	19	2.4	19	100	0	92	47	15	21	15	1.81
24104--24160	20	2.8	20	94	0	96	21	22	17	38	1.93
24527--24562	14	2.6	14	90	0	54	30	0	22	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25116--25151	14	2.6	14	90	0	54	30	0	22	47	1.52
24124--25526	589	2.4	589	99	0	2747	32	12	18	36	1.89
26393--26451	24	2.5	24	82	0	73	28	16	18	35	1.93
26625--26649	12	2.1	12	100	0	50	72	0	28	0	0.86
28936--29033	19	5.7	19	69	22	90	43	19	24	12	1.85
28936--29029	33	2.8	33	98	0	179	43	19	24	12	1.85
29029--29070	19	2.2	19	86	0	57	16	16	23	42	1.88
29038--29104	19	3.8	19	71	18	72	11	20	20	46	1.82
29210--29246	14	2.6	14	91	0	65	45	24	0	29	1.53
30600--30666	21	3.2	21	68	4	55	19	20	35	23	1.95
30600--30722	42	2.9	41	80	7	113	22	17	36	22	1.95
32718--32778	20	3.1	19	72	9	50	44	14	24	16	1.85
32743--32840	33	3.0	33	86	3	135	38	20	26	14	1.91
32839--32905	19	3.5	19	82	8	73	10	16	23	49	1.77
33464--33543	21	3.9	21	75	6	65	18	18	20	42	1.89
33427--33520	20	4.7	20	77	2	80	23	17	24	35	1.95
33452--33582	41	3.2	41	80	4	122	20	19	20	38	1.93
33509--33601	21	4.6	20	79	4	105	18	23	18	39	1.92
33509--33604	41	2.3	41	96	0	174	18	22	17	40	1.91
35154--35277	65	1.9	65	85	6	171	25	3	8	63	1.37
39013--39044	13	2.5	13	100	0	64	40	6	46	6	1.54
39546--39582	20	1.9	19	89	10	58	45	10	24	18	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41968--42040	23	3.4	22	76	14	71	45	0	2	52	1.15
41968--42011	2	22.5	2	90	4	72	52	0	0	47	1.00
41968--42011	23	2.0	23	90	4	72	52	0	0	47	1.00
43173--43215	22	2.0	22	100	0	86	32	0	30	37	1.58
43358--43420	29	2.1	31	88	5	94	30	7	0	61	1.24
43479--43508	4	7.8	4	92	7	53	23	0	0	76	0.78
46276--46321	22	2.1	22	87	0	65	45	19	17	17	1.85
47088--47200	31	3.6	31	92	1	172	33	23	15	27	1.95
47093--47217	62	2.0	63	89	4	191	34	22	16	26	1.95
51369--51469	23	4.5	23	81	8	136	57	18	12	10	1.64
51369--51477	20	4.9	20	77	17	92	57	17	12	11	1.64
51371--51433	24	2.7	24	82	4	76	60	20	11	7	1.55
51653--51702	24	2.1	24	88	0	73	58	14	14	14	1.65
51653--51710	24	2.4	24	85	0	71	56	13	13	15	1.67
57935--58766	360	2.3	360	81	4	910	35	17	24	23	1.95
57935--58766	240	3.5	238	78	6	813	35	17	24	23	1.95
57935--58766	120	6.9	120	78	6	727	35	17	24	23	1.95

Tables:   1

The End!