Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003014.1 Hibiscus syriacus cultivar Beakdansim tig00006245_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75992

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15006--15059
26
2.1
26
100
0
108
38
7
31
22
1.82
28782--28815
12
2.8
12
90
0
50
23
67
8
0
1.18
33243--33308
23
3.0
23
77
4
82
36
19
12
31
1.89
33231--33305
22
3.4
22
75
3
78
36
17
12
34
1.87
34804--34868
21
3.1
20
66
16
51
47
4
13
33
1.64
48068--48100
15
2.2
15
89
10
50
48
0
0
51
1.00
48954--48987
17
2.0
17
94
0
59
32
0
0
67
0.91
49695--49752
18
3.2
18
75
13
57
65
1
3
29
1.19
49707--49752
18
2.4
19
82
7
58
63
2
4
30
1.26
50375--50470
37
2.6
37
88
0
138
31
13
12
42
1.81
51204--52893
106
16.0
106
90
1
2468
23
18
24
34
1.96
52949--53484
266
2.0
266
98
0
1027
33
14
19
32
1.92
53965--54016
22
2.4
21
81
9
68
23
11
25
40
1.88
54414--54752
172
2.0
167
87
8
490
25
17
19
36
1.94
54775--54818
23
1.9
23
86
9
63
2
13
9
75
1.14
54784--54859
30
2.6
29
78
14
75
3
10
9
76
1.14
59359--59385
8
3.4
8
100
0
54
74
0
14
11
1.08
59445--59498
21
2.8
18
81
15
56
62
3
3
29
1.29
59449--59499
18
2.6
19
79
11
59
62
3
3
29
1.31
59689--59773
19
4.2
19
70
16
62
62
2
4
30
1.28
60142--60237
37
2.6
37
84
0
120
31
11
14
42
1.81
69376--69400
13
1.9
13
100
0
50
56
0
0
44
0.99

Tables:   1

The End!