genome.fa.s3016.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003016.1 Hibiscus syriacus cultivar Beakdansim tig00006260_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72143

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5273--5310	5	7.4	5	94	5	67	44	0	55	0	0.99
5878--5923	21	2.2	21	100	0	92	8	8	15	67	1.41
7434--7519	44	2.0	44	90	0	136	38	18	23	19	1.93
7595--7679	43	2.0	43	95	0	152	38	18	25	16	1.92
10812--10837	13	2.0	13	100	0	52	46	0	0	53	1.00
10824--10886	24	2.6	24	76	13	67	46	0	0	53	1.00
10847--10893	21	2.1	23	88	7	71	48	0	0	51	1.00
12288--12336	24	2.1	23	92	3	80	28	24	26	20	1.99
12308--12351	17	2.6	17	88	0	61	29	29	18	22	1.97
13123--13259	54	2.5	54	91	1	220	21	23	24	31	1.98
13649--13722	37	2.0	36	89	2	112	52	14	8	24	1.69
16148--16244	7	13.7	7	75	2	68	24	1	32	41	1.62
16148--16205	22	2.7	21	80	15	73	22	1	34	41	1.64
16143--16241	21	4.7	21	73	12	85	26	1	31	41	1.62
16763--16802	21	1.9	21	84	0	53	45	32	2	20	1.64
17775--17804	14	2.1	14	93	0	51	43	0	6	50	1.28
25620--25662	3	14.3	3	90	9	70	34	0	0	65	0.93
27542--27701	65	2.5	65	84	5	191	28	18	23	30	1.97
27542--27742	65	3.1	63	79	13	178	27	17	23	31	1.97
28152--28311	20	7.8	20	74	6	97	38	20	21	18	1.93
29101--29138	6	6.5	6	96	3	69	0	15	52	31	1.43
29225--29522	20	14.6	20	75	7	170	19	22	18	39	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29227--29418	40	4.7	40	81	5	240	22	23	16	36	1.94
29235--29418	83	2.2	83	94	0	323	22	24	16	36	1.94
29472--29522	19	2.6	20	90	3	77	15	17	23	43	1.88
31222--31303	23	3.6	22	71	14	69	31	21	25	20	1.98
35135--35174	21	1.9	21	85	10	55	35	10	2	52	1.48
37116--37316	65	3.1	64	80	13	232	25	18	24	31	1.98
37822--37938	59	2.0	59	88	9	177	16	17	6	59	1.57
37828--37996	88	1.9	88	84	2	223	17	15	8	57	1.63
37822--38011	29	6.5	29	79	8	179	16	17	8	57	1.64
38411--38472	20	3.3	20	72	25	71	27	24	20	27	1.99
38412--38580	36	4.9	36	70	16	142	27	27	17	27	1.98
38511--38585	20	4.0	20	75	22	81	25	30	18	25	1.98
38511--38562	16	2.9	17	78	21	54	26	28	19	25	1.98
38625--38665	21	2.0	21	90	0	64	29	21	26	21	1.99
38953--39019	34	2.0	34	87	0	98	31	13	28	26	1.94
47261--47411	42	3.5	43	83	4	171	32	21	23	23	1.98
49835--50299	41	11.3	41	79	4	461	35	20	17	26	1.95
49835--50261	167	2.6	165	80	6	452	35	20	17	25	1.95
49835--50299	84	5.6	82	82	4	445	35	20	17	26	1.95
60156--60210	23	2.4	23	93	3	94	36	41	0	21	1.54
60308--60348	18	2.3	18	87	4	57	29	7	2	60	1.36
64442--64490	22	2.3	23	82	13	68	24	0	0	75	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65276--65309	9	3.6	9	85	14	50	76	0	0	23	0.79
65274--65322	20	2.5	20	90	6	73	71	4	0	24	1.03
66518--66562	21	2.3	19	84	7	54	24	4	2	68	1.19
66518--66562	10	4.5	10	83	8	56	24	4	2	68	1.19
66997--67041	21	2.1	21	83	4	54	48	6	0	44	1.29

Tables:   1

The End!