genome.fa.s3018.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003018.1 Hibiscus syriacus cultivar Beakdansim tig00006265_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  175702

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5878--5988	53	2.1	54	96	1	206	45	7	15	32	1.73
6693--6766	20	3.7	20	87	0	103	28	24	18	28	1.98
6609--6779	40	4.2	39	72	10	128	28	22	16	31	1.96
7573--7632	24	2.5	24	83	0	84	25	18	18	38	1.93
10231--10326	34	2.8	34	95	0	165	39	25	12	22	1.89
10299--10559	20	14.0	20	73	15	220	34	22	18	23	1.96
10265--10402	54	2.6	54	89	0	213	36	26	15	21	1.93
10373--10555	74	2.5	74	94	1	314	33	21	20	24	1.97
10265--10559	54	5.4	54	71	12	199	35	23	17	23	1.96
10554--10611	20	2.9	20	81	0	62	12	15	25	46	1.80
10710--10771	14	4.3	14	77	6	61	46	14	0	38	1.45
12769--12824	20	2.8	20	100	0	112	39	25	19	16	1.91
13041--13091	18	2.8	18	100	0	102	41	5	19	33	1.76
14806--14861	20	2.8	20	80	0	67	53	23	12	10	1.69
15257--15313	22	2.6	22	85	0	87	17	19	42	21	1.90
15477--15529	20	2.7	20	90	0	88	28	20	26	24	1.99
19332--19410	34	2.4	33	83	8	90	41	0	0	58	0.98
19322--19433	34	3.6	31	75	12	88	40	0	0	58	1.04
21214--21286	21	3.5	21	88	7	112	17	32	26	23	1.97
21799--21905	34	3.1	34	86	0	151	54	4	2	38	1.36
22013--22042	14	2.1	14	93	0	51	60	10	0	30	1.30
31225--31283	2	29.5	2	100	0	118	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33051--33098	22	2.2	22	92	0	78	31	2	31	35	1.70
36289--37742	84	17.6	83	81	6	1619	24	21	25	28	1.99
36298--37742	249	5.8	249	92	2	2286	24	21	25	28	1.99
36298--37742	497	2.9	497	91	2	2291	24	21	25	28	1.99
40570--40602	17	1.9	17	93	0	57	72	9	12	6	1.26
42894--42945	2	28.5	2	74	18	51	48	0	3	48	1.20
43905--44046	73	2.0	72	83	6	180	29	2	11	57	1.45
44712--44754	19	2.4	17	88	7	59	20	4	0	74	1.00
44813--44851	17	2.3	17	86	8	53	20	7	0	71	1.10
45159--45235	33	2.3	33	84	4	93	23	16	25	33	1.96
53082--53187	45	2.4	45	83	10	128	28	14	20	36	1.92
59360--59388	15	1.9	15	100	0	58	27	27	24	20	1.99
59899--60064	63	2.6	63	76	10	176	27	17	19	35	1.94
67253--67302	19	2.6	19	81	12	66	74	0	2	24	0.93
67864--67912	21	2.4	21	80	10	57	55	16	2	26	1.52
67888--68007	62	1.9	63	86	5	172	58	13	0	27	1.41
70079--70113	14	2.4	14	85	4	52	80	0	2	17	0.84
75716--75764	19	2.6	18	81	9	62	73	0	4	22	1.00
77044--77077	17	2.0	17	100	0	68	23	23	11	41	1.87
91271--91314	22	2.0	23	86	4	63	25	25	22	27	2.00
91849--91896	21	2.3	21	92	0	78	25	22	25	27	2.00
92293--92348	2	28.5	2	85	10	80	48	0	1	50	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93347--93404	23	2.6	22	80	17	75	31	0	0	68	0.89
93350--93409	18	3.5	16	76	13	50	26	0	1	71	0.95
93450--93480	15	2.1	15	93	0	53	6	0	9	83	0.79
98446--98471	2	13.0	2	100	0	52	50	0	0	50	1.00
99470--99508	7	5.6	7	96	0	60	7	12	0	79	0.93
119878--119920	21	2.0	21	86	0	59	30	27	25	16	1.97
119900--120049	66	2.3	67	88	3	214	28	28	25	18	1.98
120696--120776	22	3.6	22	93	1	135	18	25	29	25	1.98
126823--126865	21	2.0	21	86	0	59	30	27	25	16	1.97
126845--126994	66	2.3	67	89	3	223	28	28	26	18	1.98
127645--127707	13	5.5	13	65	27	52	19	26	26	26	1.99
127641--127721	22	3.6	22	96	1	144	18	27	29	24	1.98
135399--135435	19	1.9	19	88	0	56	29	2	0	67	1.04
135432--135470	21	1.9	21	84	5	53	25	12	0	61	1.31
135768--135806	19	2.0	21	90	10	64	28	5	0	66	1.12
135763--135806	22	2.0	21	86	4	61	29	6	0	63	1.20
146471--146574	53	1.9	54	80	5	122	46	13	26	13	1.80
147339--148343	105	9.7	105	93	1	1613	34	25	17	22	1.96
150103--150139	19	1.9	19	89	10	58	27	5	0	67	1.12
155794--155836	22	2.0	22	86	9	61	48	9	13	27	1.73
156060--156095	17	2.1	17	100	0	72	27	19	5	47	1.72
162067--162152	3	28.7	3	92	0	145	34	2	0	62	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
174856--174899	1	44.0	1	81	0	52	90	0	9	0	0.44
174853--174900	11	4.3	11	87	12	71	87	0	12	0	0.54
174858--174899	9	4.4	9	93	6	66	90	0	9	0	0.45
175194--175265	33	2.1	33	85	12	92	31	8	9	50	1.65

Tables:   1

The End!