Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003019.1 Hibiscus syriacus cultivar Beakdansim tig00006266_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63225

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3734--3760
11
2.5
11
100
0
54
48
11
0
40
1.39
4249--4326
21
3.7
21
84
1
84
23
20
34
21
1.97
6093--6146
24
2.2
24
84
12
74
53
1
1
42
1.22
6131--6172
11
3.7
12
87
9
52
54
0
0
45
0.99
6105--6174
25
2.8
25
81
10
81
55
0
0
44
0.99
6169--6198
15
2.0
15
93
0
51
63
0
0
36
0.95
9020--9057
4
9.8
4
88
5
60
0
26
0
73
0.83
10463--10501
20
1.9
21
85
15
55
30
15
43
10
1.80
16048--16087
19
2.1
19
100
0
80
12
42
10
35
1.76
27127--27187
23
2.7
23
87
2
88
29
26
26
18
1.98
32135--32201
23
2.9
23
79
0
80
34
25
22
17
1.96
32989--33073
2
42.5
2
100
0
170
49
0
0
50
1.00
39309--39348
20
2.0
20
85
9
55
42
25
17
15
1.88
39476--39523
22
2.2
22
92
0
78
25
43
10
20
1.83
39742--39766
13
1.9
13
100
0
50
4
8
16
72
1.24
41698--41751
20
2.7
20
77
11
74
27
29
14
27
1.95
41827--41866
20
2.0
20
85
9
55
42
25
17
15
1.88
41989--42044
22
2.5
22
88
0
76
28
42
8
19
1.81
42302--42344
19
2.2
20
88
12
63
46
25
16
11
1.80
44233--44326
42
2.2
42
86
3
127
21
36
20
22
1.95
44264--44326
21
3.0
21
69
0
54
17
39
20
22
1.92
45718--45757
14
2.9
14
80
0
53
30
0
17
52
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45667--45807
66
2.2
66
83
8
177
31
1
17
50
1.54
46106--46192
39
2.2
39
93
0
156
16
14
20
48
1.81
46486--46538
24
2.2
24
89
0
79
47
13
1
37
1.54
46916--46965
25
2.0
25
96
0
91
44
22
8
26
1.80
47030--47108
32
2.4
33
79
10
90
37
21
17
22
1.94
47100--47249
54
2.8
54
93
2
248
18
22
20
38
1.93
47166--47206
20
2.0
20
95
0
73
14
17
24
43
1.86
49822--49868
24
2.0
24
95
0
85
34
17
19
29
1.94
49826--49877
24
2.2
24
85
0
68
36
19
17
26
1.94
50738--50969
20
11.6
20
74
11
154
26
14
25
34
1.94
50861--50904
21
2.1
21
91
0
70
38
15
22
22
1.92
52390--52436
23
2.0
23
84
12
60
61
2
4
31
1.27
61709--61821
54
2.1
55
98
1
219
45
7
15
32
1.73
62504--62553
17
2.7
18
79
11
57
38
20
16
26
1.92
62501--62593
20
4.8
20
80
7
86
30
23
18
27
1.98

Tables:   1

The End!