Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000302.1 Hibiscus syriacus cultivar Beakdansim tig00000559_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59292

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4503--4547
23
2.0
23
86
0
63
26
26
26
20
1.99
5192--5229
20
1.9
20
88
0
58
10
31
34
23
1.89
5256--5297
21
2.0
21
85
0
57
16
26
28
28
1.97
9480--9703
64
3.5
64
84
2
254
32
20
19
27
1.97
10012--10046
12
2.9
12
100
0
70
34
0
25
40
1.56
10062--10133
29
2.5
29
95
2
128
44
16
19
19
1.87
18052--18102
26
2.0
26
88
0
75
31
7
13
47
1.72
18270--18297
3
9.3
3
100
0
56
32
0
0
67
0.91
27200--27245
22
2.1
22
100
0
92
26
30
28
15
1.96
27581--27618
19
2.0
20
85
10
53
57
10
13
18
1.63
30074--30184
32
3.5
30
77
9
105
27
24
27
20
1.99
32093--32126
17
2.0
17
88
0
50
23
8
20
47
1.78
32116--32176
27
2.3
27
94
0
104
24
3
19
52
1.61
32133--32200
27
2.5
27
83
9
77
20
5
22
51
1.68
35817--35851
3
11.7
3
93
0
61
31
2
0
65
1.07
39230--39309
3
26.3
3
74
2
52
55
5
1
38
1.30
39471--39612
75
1.9
74
91
1
230
36
20
20
22
1.95
39545--39790
45
5.5
45
91
2
388
33
18
23
24
1.97
39798--39953
45
3.5
45
90
1
226
32
20
22
24
1.98
39636--40047
163
2.5
163
90
1
630
33
19
21
25
1.97
41115--41314
54
3.7
54
88
0
283
26
22
14
37
1.92
49652--49692
6
6.0
7
78
16
50
58
12
14
14
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49770--49852
43
1.9
44
82
2
105
33
19
13
33
1.90
54408--54487
3
26.3
3
71
2
61
55
2
1
41
1.21

Tables:   1

The End!