Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003020.1 Hibiscus syriacus cultivar Beakdansim tig00006274_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103470

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15328--15430
35
2.9
35
95
0
179
43
25
0
31
1.55
17600--17644
23
2.0
23
90
0
72
33
28
6
31
1.83
22906--22970
6
11.3
6
82
9
82
55
0
0
44
0.99
22906--22973
15
4.5
15
86
0
100
55
0
0
44
0.99
22909--22974
18
3.7
18
89
0
105
57
0
0
42
0.98
23104--23408
119
2.6
119
84
2
398
24
18
15
40
1.89
23844--23913
35
2.0
35
83
5
88
32
22
21
22
1.98
24103--24184
42
2.0
42
90
0
128
31
18
21
28
1.97
24336--24448
42
2.7
42
80
5
138
36
22
20
21
1.95
34627--34813
103
1.8
103
92
0
320
22
19
28
28
1.98
37029--37198
90
1.9
90
85
4
236
35
18
15
30
1.92
42139--42168
11
2.6
11
94
5
51
80
0
3
16
0.85
43626--43664
3
13.0
3
88
0
60
69
2
0
28
1.02
43741--43814
14
5.1
14
72
18
62
36
12
17
33
1.87
43711--43813
44
2.3
44
81
6
111
38
10
17
33
1.84
43743--43835
44
2.1
44
84
4
116
35
11
18
34
1.87
43919--44019
23
4.4
23
81
1
114
16
23
25
33
1.96
44179--44239
31
2.0
31
86
0
86
31
3
18
47
1.64
46126--46168
20
2.2
20
87
4
61
51
2
4
41
1.35
52330--52450
60
2.0
60
100
0
242
37
9
4
47
1.58
82034--82087
22
2.5
22
78
0
63
40
24
7
27
1.81
82369--82393
12
2.1
12
100
0
50
44
48
8
0
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83323--83366
21
2.1
21
95
0
79
36
27
25
11
1.90
83533--83593
2
31.0
2
96
3
115
50
0
0
49
1.00
85611--85681
35
2.0
36
91
2
117
40
2
4
52
1.36
86997--87061
29
2.2
29
81
10
80
44
20
4
30
1.71
89027--89070
23
1.9
23
86
9
63
56
2
0
40
1.11
91032--91300
48
5.6
48
90
0
385
28
20
12
39
1.88
96927--97000
10
7.7
10
67
24
52
56
20
12
10
1.65
96931--96994
16
4.1
16
91
4
103
56
21
12
9
1.64
98073--98143
10
6.4
10
72
25
54
53
25
12
8
1.66
98080--98151
14
5.8
14
73
26
81
54
25
12
8
1.65
98073--98153
24
3.4
24
96
3
155
54
24
12
8
1.65
98058--98164
47
2.4
44
86
9
160
54
22
12
11
1.69
98081--98186
20
5.0
20
80
6
97
50
25
13
10
1.72
99393--99673
48
6.0
47
80
8
297
28
18
13
40
1.88
99402--99673
93
2.9
93
82
6
320
28
18
12
40
1.87
99393--99673
46
6.0
46
81
7
309
28
18
13
40
1.88

Tables:   1

The End!