Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003021.1 Hibiscus syriacus cultivar Beakdansim tig00006277_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102209

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7432--7476
19
2.4
19
85
7
56
40
4
4
51
1.42
26238--26330
26
3.5
26
78
19
68
77
5
9
7
1.12
26267--26304
21
1.9
19
85
15
51
78
5
10
5
1.06
26253--26330
25
3.1
25
77
15
72
79
6
8
5
1.05
26253--26331
26
3.1
25
75
14
72
79
6
8
5
1.04
30199--30499
167
1.8
167
92
0
512
26
19
18
35
1.95
31287--31353
32
2.1
33
83
8
84
31
4
19
44
1.70
34038--34199
36
4.5
36
76
6
166
25
20
25
28
1.99
37999--38058
24
2.5
24
91
0
93
18
16
21
43
1.88
38045--38116
24
3.0
24
76
17
69
22
16
16
44
1.86
38321--38381
31
2.0
31
90
0
95
44
3
24
27
1.69
39110--39185
37
2.1
37
94
0
134
35
9
11
43
1.73
46371--46486
48
2.4
48
85
0
151
34
18
23
23
1.96
49850--49947
45
2.2
45
83
0
115
28
21
23
26
1.99
51481--51728
130
1.9
130
93
0
424
35
14
13
36
1.85
51495--51759
130
2.0
129
81
4
309
38
12
13
34
1.83
51967--52042
27
2.9
26
74
22
70
43
3
6
46
1.48
53021--53236
118
1.8
116
85
3
299
30
15
12
42
1.83
61242--61322
33
2.5
33
95
2
146
23
27
2
46
1.65
70237--70296
20
2.8
22
85
10
79
16
33
18
31
1.93
70545--70582
20
1.9
20
94
0
67
26
28
21
23
1.99
75059--75118
27
2.3
27
88
2
95
43
5
6
45
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78958--79009
18
2.5
22
76
11
58
23
28
17
30
1.97
85923--86181
144
1.8
143
84
5
362
46
7
6
38
1.60
86149--86187
17
2.3
17
86
8
53
61
0
2
35
1.10
87912--88517
122
4.7
134
80
10
518
26
20
15
38
1.92
88185--88515
122
2.7
122
93
0
554
25
19
15
39
1.91
88708--89040
36
9.2
35
66
14
147
39
15
15
28
1.88
88522--89050
73
7.2
73
83
7
502
38
14
16
30
1.89
88662--89050
146
2.7
146
89
1
593
39
14
16
29
1.88
88662--89050
73
5.3
72
90
2
539
39
14
16
29
1.88
90435--90615
75
2.4
75
87
0
263
25
22
17
34
1.96
91913--91960
25
1.9
26
87
8
73
6
16
0
77
0.97
92245--92278
2
17.0
2
93
0
59
50
2
0
47
1.16

Tables:   1

The End!