genome.fa.s3022.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003022.1 Hibiscus syriacus cultivar Beakdansim tig00006280_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62456

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6748--6804	22	2.6	22	88	0	87	33	19	14	33	1.91
8685--8791	31	3.4	31	76	11	94	30	18	20	29	1.97
8779--8850	30	2.4	30	90	0	108	23	20	23	31	1.98
13240--13275	11	3.5	11	78	21	51	25	22	25	27	2.00
13232--13282	19	2.7	19	96	0	93	25	23	25	25	2.00
13963--14056	31	3.1	30	73	13	84	27	19	20	32	1.96
14043--14114	30	2.4	30	90	0	108	23	20	23	31	1.98
14930--15490	112	4.9	112	86	3	694	38	15	19	27	1.91
14930--15509	225	2.5	224	85	4	718	37	15	18	27	1.92
15875--15928	22	2.5	21	82	14	74	46	0	0	53	1.00
17512--17565	2	27.5	2	96	3	101	50	0	0	50	1.00
18100--18143	2	22.0	2	100	0	88	50	0	0	50	1.00
18127--18706	38	15.6	38	81	13	599	45	3	6	44	1.45
18181--18240	12	4.9	12	72	11	59	45	6	11	36	1.67
18131--18706	74	7.8	73	84	10	667	45	3	6	44	1.45
18470--18526	29	2.0	29	93	3	98	43	3	8	43	1.52
18507--18531	11	2.3	11	100	0	50	40	8	8	44	1.63
18471--18534	29	2.2	28	88	2	92	43	4	7	43	1.54
18498--18700	41	5.1	39	76	14	152	45	3	5	44	1.46
20189--20234	23	2.0	23	82	0	56	21	2	0	76	0.90
20538--20567	13	2.3	13	100	0	60	40	0	0	60	0.97
31928--31965	14	2.7	15	84	12	53	34	28	7	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31977--32073	48	2.0	48	94	4	169	47	10	24	17	1.79
31992--32088	48	2.0	47	90	7	151	47	8	25	18	1.76
34229--34272	23	1.9	23	86	9	63	40	2	0	56	1.11
36699--36740	7	6.3	7	88	5	52	76	4	0	19	0.96
36688--36754	26	2.6	27	78	7	75	74	4	4	16	1.14
36783--36850	36	1.9	35	81	3	82	51	5	1	41	1.35
36818--37008	100	1.9	104	89	5	300	43	5	5	44	1.52
36785--37079	100	2.9	97	78	11	254	45	6	4	43	1.50
36766--37146	35	10.9	35	71	19	176	44	7	4	43	1.52
37133--37163	2	16.0	2	93	6	55	51	0	0	48	1.00
37654--38451	84	9.7	82	76	7	667	23	20	25	30	1.98
37654--38451	165	4.9	163	88	3	1054	23	20	25	30	1.98
41816--41860	19	2.4	19	92	3	74	66	8	13	11	1.44
45087--45128	7	6.3	7	88	5	52	76	4	0	19	0.96
45076--45142	26	2.6	27	78	7	75	74	4	4	16	1.14
45224--45297	30	2.3	33	86	11	102	40	8	8	43	1.64
45153--45480	35	9.3	35	72	15	189	44	6	5	43	1.52
45335--45474	36	3.8	36	82	6	140	48	7	5	39	1.52
45426--45451	13	2.0	13	100	0	52	46	7	7	38	1.61
45528--45560	2	17.0	2	93	6	59	51	0	0	48	1.00
47329--47387	29	2.0	29	100	0	118	23	10	16	49	1.77
55087--55179	7	13.4	7	74	10	57	22	0	30	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55072--55224	14	11.1	14	68	10	91	24	0	26	47	1.56
55087--55220	41	3.2	41	83	1	151	25	0	26	47	1.52
55383--55423	14	3.1	14	76	20	52	39	0	4	56	1.21
58761--58947	21	8.9	20	79	12	148	21	20	22	34	1.97
58766--58947	42	4.3	41	84	8	217	21	20	23	35	1.96
58766--58947	84	2.2	82	87	7	251	21	20	23	35	1.96
58766--58919	63	2.4	63	84	8	231	20	20	24	35	1.96
59036--59061	6	4.3	6	100	0	52	34	50	15	0	1.45
59663--59705	19	2.1	21	91	8	72	41	16	20	20	1.90
59664--59729	21	3.2	20	82	8	62	36	19	22	21	1.95
59767--59877	21	5.3	21	85	0	150	33	27	15	23	1.95
59767--59884	42	2.8	42	88	0	182	33	27	16	23	1.96
59893--59987	21	4.5	21	90	0	136	22	21	28	28	1.99

Tables:   1

The End!