Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003023.1 Hibiscus syriacus cultivar Beakdansim tig00006290_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86091

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2569--2610
16
2.5
17
85
14
52
78
0
21
0
0.75
2577--2610
17
1.9
18
88
5
52
79
0
20
0
0.73
3476--3642
65
2.7
63
82
8
207
39
20
12
26
1.89
5649--5683
13
2.6
14
86
4
54
14
2
2
80
0.95
5617--5761
19
7.2
20
75
20
117
14
9
2
73
1.17
5650--5884
40
6.4
36
70
19
116
14
9
2
73
1.20
5538--5733
109
1.8
108
78
15
226
17
7
3
71
1.22
5647--5893
9
26.7
9
67
20
75
14
9
2
73
1.19
5750--5805
20
2.8
20
79
15
71
14
1
5
78
1.00
5852--5899
22
2.1
22
84
3
69
16
10
0
72
1.10
5856--5909
23
2.4
22
87
9
74
12
9
1
75
1.11
6589--6627
15
2.8
13
85
14
60
61
0
2
35
1.10
7995--8069
35
2.1
35
92
0
123
30
0
25
44
1.55
10140--10198
23
2.6
23
80
0
73
15
22
23
38
1.92
28026--28054
2
15.0
2
92
7
51
51
0
0
48
1.00
28212--28276
13
5.0
13
80
0
76
35
20
20
24
1.96
29095--29140
24
1.9
24
100
0
92
50
6
8
34
1.59
34710--34757
19
2.3
22
79
20
75
35
27
0
37
1.57
34715--34760
19
2.4
19
100
0
92
34
26
0
39
1.57
37682--38608
147
6.2
149
78
7
825
33
11
16
38
1.85
37679--38597
307
3.1
298
81
6
948
32
11
16
38
1.85
39469--39511
2
21.5
2
100
0
86
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42714--42801
46
2.0
45
88
4
133
29
27
20
22
1.99
42714--42785
23
3.2
23
98
2
137
26
27
23
22
1.99
42823--42859
19
1.9
19
94
0
65
37
16
21
24
1.93
43240--43309
33
2.1
33
83
0
86
32
15
28
22
1.95
45970--46026
20
3.1
18
82
7
69
29
14
10
45
1.78
46245--46324
22
3.6
22
91
0
124
31
20
18
30
1.96
51226--51278
3
17.7
3
96
0
97
32
1
0
66
1.03
52072--52712
326
2.0
326
92
0
1077
26
12
25
36
1.91
53512--53545
5
6.8
5
86
0
50
14
0
5
79
0.91
54756--54796
18
2.3
18
95
0
73
29
19
39
12
1.88
60691--60721
6
5.3
6
92
7
55
16
0
0
83
0.64
60681--60721
11
3.6
11
87
6
55
14
4
0
80
0.87
60829--60876
24
2.0
25
84
12
64
18
6
2
72
1.15
61371--61404
17
2.1
16
88
5
50
76
0
8
14
1.01
75188--75237
3
15.7
3
83
8
55
62
0
0
38
0.96
75181--75234
27
2.1
25
89
6
81
55
0
1
42
1.10
77387--77481
49
1.9
49
97
0
181
30
27
7
34
1.84
77428--77676
86
2.9
85
93
2
426
24
24
8
43
1.81
77690--77719
3
10.0
3
100
0
60
33
0
0
66
0.92
79568--79666
3
31.0
3
76
15
67
56
2
3
38
1.26
79558--79623
16
4.3
16
74
16
68
53
1
1
43
1.19
79567--79666
45
2.2
44
84
7
121
56
2
3
39
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79884--79965
42
2.0
42
92
0
137
36
21
19
21
1.95
79903--79967
20
3.2
20
68
12
51
40
21
18
20
1.92
85645--85695
24
2.1
24
100
0
102
25
21
15
37
1.93

Tables:   1

The End!