Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003024.1 Hibiscus syriacus cultivar Beakdansim tig00006292_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 116842
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32
Found at i:5814 original size:5 final size:5
Alignment explanation
Indices: 5771--5812 Score: 70
Period size: 5 Copynumber: 8.8 Consensus size: 5
5761 CATATATTAT
5771 TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TTTT- TTTT- TTTT
1 TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TTTT
5813 TTCCTTAATT
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 8 0.22
5 29 0.78
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (5 bp):
TTTTG
Found at i:6325 original size:2 final size:2
Alignment explanation
Indices: 6318--6350 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
6308 ATAAGACTCG
6318 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6351 GCATTTATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:9413 original size:34 final size:36
Alignment explanation
Indices: 9375--9451 Score: 122
Period size: 34 Copynumber: 2.2 Consensus size: 36
9365 TATTTCATTA
9375 AAATATGTTATAAATGATTAA-TAATTTTATT-AAT
1 AAATATGTTATAAATGATTAATTAATTTTATTAAAT
*
9409 AAATATGTTATAAATGATTAATTTATTTTATTAAAAT
1 AAATATGTTATAAATGATTAATTAATTTTATT-AAAT
9446 AAATAT
1 AAATAT
9452 TCAGGTGGGA
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
34 21 0.54
35 9 0.23
37 9 0.23
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.47
Consensus pattern (36 bp):
AAATATGTTATAAATGATTAATTAATTTTATTAAAT
Found at i:15648 original size:20 final size:21
Alignment explanation
Indices: 15623--15661 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
15613 GAGGGCTGGA
15623 AACCGGTTT-GACCGATTTTT
1 AACCGGTTTCGACCGATTTTT
*
15643 AACCGGTTTCGACTGATTT
1 AACCGGTTTCGACCGATTT
15662 GACCATTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (21 bp):
AACCGGTTTCGACCGATTTTT
Found at i:15695 original size:19 final size:19
Alignment explanation
Indices: 15673--15710 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
15663 ACCATTTTCG
15673 ACCGATTTGACCGGTCTGA
1 ACCGATTTGACCGGTCTGA
*
15692 ACCGGTTTGACCGGTCTGA
1 ACCGATTTGACCGGTCTGA
15711 CCCTACCCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.18, C:0.26, G:0.29, T:0.26
Consensus pattern (19 bp):
ACCGATTTGACCGGTCTGA
Found at i:15704 original size:9 final size:9
Alignment explanation
Indices: 15624--15712 Score: 52
Period size: 9 Copynumber: 9.3 Consensus size: 9
15614 AGGGCTGGAA
15624 ACCGGTTTG
1 ACCGGTTTG
* *
15633 ACCGATTTTTA
1 ACCG--GTTTG
15644 ACCGGTTTCG
1 ACCGGTTT-G
* *
15654 ACTGATTTG
1 ACCGGTTTG
**
15663 ACCATTTTCG
1 ACCGGTTT-G
*
15673 ACCGATTTG
1 ACCGGTTTG
*
15682 ACCGGTCTG
1 ACCGGTTTG
15691 AACCGGTTTG
1 -ACCGGTTTG
*
15701 ACCGGTCTG
1 ACCGGTTTG
15710 ACC
1 ACC
15713 CTACCCGACC
Statistics
Matches: 60, Mismatches: 15, Indels: 10
0.71 0.18 0.12
Matches are distributed among these distances:
9 32 0.53
10 21 0.35
11 7 0.12
ACGTcount: A:0.18, C:0.26, G:0.24, T:0.33
Consensus pattern (9 bp):
ACCGGTTTG
Found at i:15730 original size:17 final size:17
Alignment explanation
Indices: 15708--15745 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
15698 TTGACCGGTC
*
15708 TGACCCTACCCGACCGT
1 TGACCCGACCCGACCGT
15725 TGACCCGACCCGACCGT
1 TGACCCGACCCGACCGT
15742 TGAC
1 TGAC
15746 TTCCTTTGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.18, C:0.45, G:0.21, T:0.16
Consensus pattern (17 bp):
TGACCCGACCCGACCGT
Found at i:22858 original size:20 final size:21
Alignment explanation
Indices: 22833--22871 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
22823 GAGGGCTGGA
*
22833 AACCGGTTT-GACCGGTTTTC
1 AACCGGTTTCAACCGGTTTTC
22853 AACCGGTTTCAACCGGTTT
1 AACCGGTTTCAACCGGTTT
22872 GACCATTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.18, C:0.26, G:0.23, T:0.33
Consensus pattern (21 bp):
AACCGGTTTCAACCGGTTTTC
Found at i:22864 original size:10 final size:10
Alignment explanation
Indices: 22833--22871 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
22823 GAGGGCTGGA
22833 AACCGGTTT-
1 AACCGGTTTC
*
22842 GACCGGTTTTC
1 AACCGG-TTTC
22853 AACCGGTTTC
1 AACCGGTTTC
22863 AACCGGTTT
1 AACCGGTTT
22872 GACCATTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
9 5 0.19
10 16 0.62
11 5 0.19
ACGTcount: A:0.18, C:0.26, G:0.23, T:0.33
Consensus pattern (10 bp):
AACCGGTTTC
Found at i:30751 original size:37 final size:36
Alignment explanation
Indices: 30699--31124 Score: 202
Period size: 38 Copynumber: 11.2 Consensus size: 36
30689 ATATAGTTTG
*
30699 AAATCATTTTGAAAATTATATAATATATGGTTTTTATA
1 AAAT-ATTTTGAAAATTATATAATATATAGTTTTTA-A
30737 AAATATTTTGAAAA-TATATAATATATAGTTTTT--
1 AAATATTTTGAAAATTATATAATATATAGTTTTTAA
* * ** *
30770 GAATTTTTTCTAAATATATATAATATATAGCTTTTAA
1 AAATATTTTGAAAAT-TATATAATATATAGTTTTTAA
* * * * *
30807 AAACATTTTTGAAAAACATATATATTATATAATTTTGAA
1 AAATA-TTTTG-AAAA-TTATATAATATATAGTTTTTAA
* * ** * *
30846 AATTAGTTTCTAAA-TATATATTATATAGTTTTGAA
1 AAATATTTTGAAAATTATATAATATATAGTTTTTAA
* * * *
30881 AATTAGTTTTTAAAATATATATATTATATAGTTTTGAA
1 AAATA-TTTTGAAAAT-TATATAATATATAGTTTTTAA
* * * *
30919 AATTAGTTTTGAAAATTATTTTTTTAAAATATATGTTATATAGTTTTGA
1 AAATA-TTTTGAAAATTA------TATAATATA---TA-GT--TTTTAA
* ** * *
30968 AAATTAGTTTTTAAAATATATATATTATATAG--TTT-G
1 AAA-TATTTTGAAAATTATATA-A-TATATAGTTTTTAA
*
31004 AAATCATTTTGAAAATTATATAATATATGGTTTTTATA
1 AAAT-ATTTTGAAAATTATATAATATATAGTTTTTA-A
*
31042 AAATATTTTGAAAATATATATGATATATAGTTTTTAA
1 AAATATTTTGAAAAT-TATATAATATATAGTTTTTAA
* *
31079 AACAT-TTTCGAAAAAATGTATATATTATATAGTTTTTGAA
1 AA-ATATTTTG--AAAAT-TATATAATATATAGTTTTT-AA
31119 AAATAT
1 AAATAT
31125 ATATAATATA
Statistics
Matches: 301, Mismatches: 51, Indels: 70
0.71 0.12 0.17
Matches are distributed among these distances:
33 10 0.03
34 6 0.02
35 45 0.15
36 43 0.14
37 38 0.13
38 71 0.24
39 47 0.16
40 5 0.02
42 2 0.01
43 10 0.03
44 1 0.00
45 4 0.01
46 2 0.01
47 1 0.00
49 14 0.05
50 2 0.01
ACGTcount: A:0.43, C:0.02, G:0.08, T:0.47
Consensus pattern (36 bp):
AAATATTTTGAAAATTATATAATATATAGTTTTTAA
Found at i:30805 original size:71 final size:72
Alignment explanation
Indices: 30750--30934 Score: 85
Period size: 74 Copynumber: 2.5 Consensus size: 72
30740 TATTTTGAAA
** * * * * **
30750 ATATATAATATATAGTTTT-TGAAT-TTTTTCTAAATATATATAATATATAGCTTTTAAAAACA-
1 ATATATAATATATAGTTTTAAAAATAGTTTT-GAAA-ATATATAATATATAGTTTTTGAAATTAG
* *
30812 TTTTTGAAAA
64 TTTCT-AAAT
* * * *
30822 ACATATATATTATATAATTTTGAAAATTAGTTTCT-A-AATATATATTATATAG-TTTTGAAAAT
1 ATATATA-AT-ATATAGTTTT-AAAAATAGTTT-TGAAAATATATAATATATAGTTTTTG-AAAT
*
30884 TAGTTTTTAAAAT
61 TAGTTTCT-AAAT
* *
30897 ATATATATTATATAGTTTTGAAAATTAGTTTTGAAAAT
1 ATATATAATATATAGTTTT-AAAAATAGTTTTGAAAAT
30935 TATTTTTTTA
Statistics
Matches: 88, Mismatches: 15, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
72 7 0.08
73 28 0.32
74 31 0.35
75 15 0.17
76 3 0.03
77 3 0.03
78 1 0.01
ACGTcount: A:0.43, C:0.03, G:0.07, T:0.48
Consensus pattern (72 bp):
ATATATAATATATAGTTTTAAAAATAGTTTTGAAAATATATAATATATAGTTTTTGAAATTAGTT
TCTAAAT
Found at i:30869 original size:35 final size:37
Alignment explanation
Indices: 30678--30927 Score: 184
Period size: 35 Copynumber: 6.9 Consensus size: 37
30668 TTTCTTATTT
* * **
30678 ATATATATATTATATAG-TTTG-AAATCATTTTGAAA
1 ATATATATATTATATAGTTTTGAAAATTAGTTTCTAA
* * * *
30713 AT-TATATAATATATGGTTTTTATAAAATA-TTT-TGAA
1 ATATATATATTATATAGTTTTGA-AAATTAGTTTCT-AA
* *
30749 A-ATATATAATATATAGTTTTTG--AATT-TTTTCTAA
1 ATATATATATTATATAG-TTTTGAAAATTAGTTTCTAA
* * **
30783 ATATATATAATATATAGCTTTTAAAAACATT--TTTGAAAA
1 ATATATATATTATATAG-TTTT-GAAA-ATTAGTTT-CTAA
* *
30822 ACATATATATTATATAATTTTGAAAATTAGTTTCT-A
1 ATATATATATTATATAGTTTTGAAAATTAGTTTCTAA
*
30858 A-ATATATATTATATAGTTTTGAAAATTAGTTTTTAAA
1 ATATATATATTATATAGTTTTGAAAATTAGTTTCT-AA
30895 ATATATATATTATATAGTTTTGAAAATTAGTTT
1 ATATATATATTATATAGTTTTGAAAATTAGTTT
30928 TGAAAATTAT
Statistics
Matches: 175, Mismatches: 21, Indels: 35
0.76 0.09 0.15
Matches are distributed among these distances:
34 21 0.12
35 56 0.32
36 24 0.14
37 13 0.07
38 42 0.24
39 19 0.11
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.48
Consensus pattern (37 bp):
ATATATATATTATATAGTTTTGAAAATTAGTTTCTAA
Found at i:30916 original size:73 final size:70
Alignment explanation
Indices: 30678--30927 Score: 240
Period size: 73 Copynumber: 3.5 Consensus size: 70
30668 TTTCTTATTT
* * ** * *
30678 ATATATATATTATATAG-TTTGAAATCATTTTGAAAATTATATAATATATGGTTTTTATAAAATA
1 ATATATATATTATATAGTTTTGAAATTAGTTTCTAAA-TATATATTATATAG-TTTTA-AAAATA
*
30742 TTTTGAAA
63 TTTTTAAA
* *
30750 ATATATA-A-TATATAGTTTTTG-AATT-TTTTCTAAATATATATAATATATAGCTTTTAAAAAC
1 ATATATATATTATATAG-TTTTGAAATTAGTTTCTAAATATATAT--TATATAG-TTTTAAAAAT
30811 ATTTTTGAAAA
62 ATTTTT--AAA
* * *
30822 ACATATATATTATATAATTTTGAAAATTAGTTTCTAAATATATATTATATAGTTTTGAAAATTAG
1 ATATATATATTATATAGTTTTG-AAATTAGTTTCTAAATATATATTATATAGTTTT-AAAAATA-
30887 TTTTTAAA
63 TTTTTAAA
30895 ATATATATATTATATAGTTTTGAAAATTAGTTT
1 ATATATATATTATATAGTTTTG-AAATTAGTTT
30928 TGAAAATTAT
Statistics
Matches: 150, Mismatches: 15, Indels: 25
0.79 0.08 0.13
Matches are distributed among these distances:
69 6 0.04
70 23 0.15
71 15 0.10
72 20 0.13
73 44 0.29
74 18 0.12
75 9 0.06
76 15 0.10
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.48
Consensus pattern (70 bp):
ATATATATATTATATAGTTTTGAAATTAGTTTCTAAATATATATTATATAGTTTTAAAAATATTT
TTAAA
Found at i:30947 original size:14 final size:13
Alignment explanation
Indices: 30871--30984 Score: 64
Period size: 13 Copynumber: 9.0 Consensus size: 13
30861 ATATATTATA
30871 TAGTTTTGAAAAT
1 TAGTTTTGAAAAT
*
30884 TAGTTTTTAAAAT
1 TAGTTTTGAAAAT
*
30897 ATA-TATATT--ATA-
1 -TAGT-T-TTGAAAAT
30909 TAGTTTTGAAAAT
1 TAGTTTTGAAAAT
30922 TAGTTTTGAAAAT
1 TAGTTTTGAAAAT
* *
30935 TATTTTTTTAAAAT
1 TA-GTTTTGAAAAT
* *
30949 ATA-TGTT--ATA-
1 -TAGTTTTGAAAAT
30959 TAGTTTTGAAAAT
1 TAGTTTTGAAAAT
*
30972 TAGTTTTTAAAAT
1 TAGTTTTGAAAAT
30985 ATATATATTA
Statistics
Matches: 78, Mismatches: 10, Indels: 26
0.68 0.09 0.23
Matches are distributed among these distances:
9 2 0.03
10 5 0.06
11 5 0.06
12 5 0.06
13 45 0.58
14 12 0.15
15 4 0.05
ACGTcount: A:0.39, C:0.00, G:0.10, T:0.51
Consensus pattern (13 bp):
TAGTTTTGAAAAT
Found at i:30962 original size:50 final size:51
Alignment explanation
Indices: 30871--30984 Score: 185
Period size: 50 Copynumber: 2.3 Consensus size: 51
30861 ATATATTATA
30871 TAGTTTTGAAAATTAGTTTTTAAAATATATATATTATATAGTTTTGAAAAT
1 TAGTTTTGAAAATTAGTTTTTAAAATATATATATTATATAGTTTTGAAAAT
* * *
30922 TAGTTTTGAAAATTATTTTTTTAAA-ATATATGTTATATAGTTTTGAAAAT
1 TAGTTTTGAAAATTAGTTTTTAAAATATATATATTATATAGTTTTGAAAAT
*
30972 TAGTTTTTAAAAT
1 TAGTTTTGAAAAT
30985 ATATATATTA
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
50 36 0.61
51 23 0.39
ACGTcount: A:0.39, C:0.00, G:0.10, T:0.51
Consensus pattern (51 bp):
TAGTTTTGAAAATTAGTTTTTAAAATATATATATTATATAGTTTTGAAAAT
Found at i:30963 original size:88 final size:84
Alignment explanation
Indices: 30838--31022 Score: 291
Period size: 88 Copynumber: 2.2 Consensus size: 84
30828 ATATTATATA
30838 ATTTTGAAAATTA-GTTTCTAAATATATATTATATAGTTTTGAAAATTAGTTTTTAAAATATATA
1 ATTTTGAAAATTATGTTTCTAAATATATATTATATAGTTTTGAAAATTAGTTTTTAAAATATATA
*
30902 TATTATATAGTTTTGAAAATT
66 TATTATATAG-TTTG-AAATC
* * *
30923 AGTTTTGAAAATTATTTTTTTAAAATATATGTTATATAGTTTTGAAAATTAGTTTTTAAAATATA
1 A-TTTTGAAAATTATGTTTCT-AAATATATATTATATAGTTTTGAAAATTAGTTTTTAAAATATA
30988 TATATTATATAGTTTGAAATC
64 TATATTATATAGTTTGAAATC
31009 ATTTTGAAAATTAT
1 ATTTTGAAAATTAT
31023 ATAATATATG
Statistics
Matches: 93, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
85 14 0.15
86 17 0.18
87 8 0.09
88 54 0.58
ACGTcount: A:0.41, C:0.01, G:0.09, T:0.50
Consensus pattern (84 bp):
ATTTTGAAAATTATGTTTCTAAATATATATTATATAGTTTTGAAAATTAGTTTTTAAAATATATA
TATTATATAGTTTGAAATC
Found at i:31127 original size:27 final size:27
Alignment explanation
Indices: 31090--31147 Score: 82
Period size: 27 Copynumber: 2.1 Consensus size: 27
31080 ACATTTTCGA
* *
31090 AAAAATGTATATATTATAT-AGTTTTT
1 AAAAATATATATAATATATAAGTTTTT
31116 GAAAAATATATATAATATATAAGTTTTT
1 -AAAAATATATATAATATATAAGTTTTT
31144 AAAA
1 AAAA
31148 CAATTTTTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 21 0.75
28 7 0.25
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (27 bp):
AAAAATATATATAATATATAAGTTTTT
Found at i:31129 original size:29 final size:27
Alignment explanation
Indices: 31083--31147 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 27
31073 TTTTAAAACA
* *
31083 TTTTCGAAAAAATGTAT-ATATTATATAG
1 TTTTTGAAAAAATATATAATA-TATA-AG
31111 TTTTTGAAAAATATATATAATATATAAG
1 TTTTTGAAAAA-ATATATAATATATAAG
31139 TTTTT-AAAA
1 TTTTTGAAAA
31148 CAATTTTTGA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
27 4 0.12
28 17 0.52
29 9 0.27
30 3 0.09
ACGTcount: A:0.46, C:0.02, G:0.08, T:0.45
Consensus pattern (27 bp):
TTTTTGAAAAAATATATAATATATAAG
Found at i:31200 original size:36 final size:36
Alignment explanation
Indices: 31111--31219 Score: 128
Period size: 36 Copynumber: 2.9 Consensus size: 36
31101 TATTATATAG
*
31111 TTTTTGAAAAATATATATAATATATAAGTTTTTAAAACAA
1 TTTTTG-AAAATATATAT--TATATAA-TTTTAAAAACAA
* **
31151 TTTTTGAAAATATATATTATATAATTTTGAAAATTA
1 TTTTTGAAAATATATATTATATAATTTTAAAAACAA
* *
31187 TTTTTTAACATATATATTATATAATTTTAAAAA
1 TTTTTGAAAATATATATTATATAATTTTAAAAA
31220 AAAAATTTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
36 39 0.62
37 7 0.11
39 11 0.17
40 6 0.10
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.48
Consensus pattern (36 bp):
TTTTTGAAAATATATATTATATAATTTTAAAAACAA
Found at i:31201 original size:66 final size:65
Alignment explanation
Indices: 31046--31183 Score: 187
Period size: 66 Copynumber: 2.2 Consensus size: 65
31036 TTTATAAAAT
*
31046 ATTTTG-AAAATATATATGATATAT-AGTTTTTAAAACATTTTCGAAAAAATGTATATATTATAT
1 ATTTTGAAAAATATATATAATATATAAGTTTTTAAAACATTTTCG-AAAAA-GTATATATTATAT
31109 AG
64 AG
* *
31111 TTTTTGAAAAATATATATAATATATAAGTTTTTAAAACAATTTTTG-AAAA-TATATATTATATA
1 ATTTTGAAAAATATATATAATATATAAGTTTTTAAAAC-ATTTTCGAAAAAGTATATATTATATA
31174 -
65 G
31174 ATTTTGAAAA
1 ATTTTGAAAA
31184 TTATTTTTTA
Statistics
Matches: 66, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
63 9 0.14
64 13 0.20
65 5 0.08
66 21 0.32
67 12 0.18
68 6 0.09
ACGTcount: A:0.46, C:0.02, G:0.07, T:0.44
Consensus pattern (65 bp):
ATTTTGAAAAATATATATAATATATAAGTTTTTAAAACATTTTCGAAAAAGTATATATTATATAG
Found at i:31232 original size:3 final size:3
Alignment explanation
Indices: 31226--31301 Score: 68
Period size: 3 Copynumber: 24.7 Consensus size: 3
31216 AAAAAAAAAT
31226 TTA TTA -TA TTAA TTA TTA TTA TTA TTTA TTA TTA TTTA TT- TTA TT-
1 TTA TTA TTA TT-A TTA TTA TTA TTA -TTA TTA TTA -TTA TTA TTA TTA
* *
31271 TTA TTA TTTA TTA CTTA TTT TTA TTT TTA TT
1 TTA TTA -TTA TTA -TTA TTA TTA TTA TTA TT
31302 TTTCTTTTCT
Statistics
Matches: 61, Mismatches: 4, Indels: 16
0.75 0.05 0.20
Matches are distributed among these distances:
2 6 0.10
3 40 0.66
4 15 0.25
ACGTcount: A:0.28, C:0.01, G:0.00, T:0.71
Consensus pattern (3 bp):
TTA
Found at i:31239 original size:13 final size:14
Alignment explanation
Indices: 31223--31301 Score: 73
Period size: 13 Copynumber: 6.0 Consensus size: 14
31213 TTAAAAAAAA
31223 AATTTATTA-TATT
1 AATTTATTATTATT
31236 AA-TTATTATTATT
1 AATTTATTATTATT
31249 -ATTTATTATTATTT
1 AATTTATTATTA-TT
*
31263 ATTTTATT-TTATT
1 AATTTATTATTATT
31276 -ATTTATTACTTATT
1 AATTTATTA-TTATT
*
31290 --TTTATTTTTATT
1 AATTTATTATTATT
31302 TTTCTTTTCT
Statistics
Matches: 57, Mismatches: 3, Indels: 13
0.78 0.04 0.18
Matches are distributed among these distances:
12 18 0.32
13 23 0.40
14 10 0.18
15 6 0.11
ACGTcount: A:0.29, C:0.01, G:0.00, T:0.70
Consensus pattern (14 bp):
AATTTATTATTATT
Found at i:31254 original size:10 final size:10
Alignment explanation
Indices: 31226--31301 Score: 83
Period size: 10 Copynumber: 7.9 Consensus size: 10
31216 AAAAAAAAAT
31226 TTATTATATTAA
1 TTATT-TATT-A
31238 TTA-TTATTA
1 TTATTTATTA
31247 TTATTTATTA
1 TTATTTATTA
31257 TTATTTATT-
1 TTATTTATTA
31266 TTA-TT-TTA
1 TTATTTATTA
31274 TTATTTATTA
1 TTATTTATTA
31284 CTTATTT-TTA
1 -TTATTTATTA
31294 TT-TTTATT
1 TTATTTATT
31302 TTTCTTTTCT
Statistics
Matches: 58, Mismatches: 0, Indels: 15
0.79 0.00 0.21
Matches are distributed among these distances:
7 2 0.03
8 8 0.14
9 13 0.22
10 25 0.43
11 7 0.12
12 3 0.05
ACGTcount: A:0.28, C:0.01, G:0.00, T:0.71
Consensus pattern (10 bp):
TTATTTATTA
Found at i:31270 original size:40 final size:40
Alignment explanation
Indices: 31225--31302 Score: 113
Period size: 40 Copynumber: 1.9 Consensus size: 40
31215 AAAAAAAAAA
31225 TTTATTATATTAATTATTA-TTATTATTTATTATTATTTAT
1 TTTATTATATTAATTATTACTTATT-TTTATTATTATTTAT
* * *
31265 TTTATTTTATTATTTATTACTTATTTTTATTTTTATTT
1 TTTATTATATTAATTATTACTTATTTTTATTATTATTT
31303 TTCTTTTCTC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
40 29 0.85
41 5 0.15
ACGTcount: A:0.27, C:0.01, G:0.00, T:0.72
Consensus pattern (40 bp):
TTTATTATATTAATTATTACTTATTTTTATTATTATTTAT
Found at i:31309 original size:17 final size:17
Alignment explanation
Indices: 31238--31309 Score: 67
Period size: 17 Copynumber: 4.1 Consensus size: 17
31228 ATTATATTAA
* *
31238 TTATTA-TTATTATTTA
1 TTATTATTTATTTTTTT
*
31254 TTATTATTTATTTTATT
1 TTATTATTTATTTTTTT
31271 TTATTATTTATTACTTATTT
1 TTATTATTTATT--TT-TTT
31291 TTATT-TTTATTTTTCTT
1 TTATTATTTATTTTT-TT
31308 TT
1 TT
31310 CTCATTTTGT
Statistics
Matches: 47, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
16 7 0.15
17 25 0.53
19 8 0.17
20 7 0.15
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (17 bp):
TTATTATTTATTTTTTT
Found at i:33426 original size:21 final size:21
Alignment explanation
Indices: 33400--33444 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
33390 GATTTCTGGG
* *
33400 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
33421 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
33442 CAA
1 CAA
33445 ACGAACAAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:34051 original size:18 final size:18
Alignment explanation
Indices: 34028--34062 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
34018 CTAGGAGATT
34028 TGAACATA-AATGATAAGA
1 TGAACATATAA-GATAAGA
34046 TGAACATATAAGATAAG
1 TGAACATATAAGATAAG
34063 CTAGATGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.54, C:0.06, G:0.17, T:0.23
Consensus pattern (18 bp):
TGAACATATAAGATAAGA
Found at i:34306 original size:2 final size:2
Alignment explanation
Indices: 34299--34326 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
34289 AATCTTGAGG
34299 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
34327 GAAATGAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:35146 original size:149 final size:149
Alignment explanation
Indices: 34961--35264 Score: 590
Period size: 149 Copynumber: 2.0 Consensus size: 149
34951 GAGTCGAGGG
34961 TCTACGCGGTTCTTAGGGACATATGTATATTCTTTGGAACCTGTGTGAAGTCTGGAAAGACACAT
1 TCTACGCGGTTCTTAGGGACATATGTATATTCTTTGGAACCTGTGTGAAGTCTGGAAAGACACAT
* *
35026 ACTTGATCCCTAGCATATGTATATGATTCTTACAGAATTCTATGTGGTCCTTATGGACATTATTA
66 ACTTGATCCCTAGCATATGTATATGATTCTTAAAGAATTCTATGTGGTCCTTATGGACATCATTA
35091 TATGGCACTACGGTGCAAT
131 TATGGCACTACGGTGCAAT
35110 TCTACGCGGTTCTTAGGGACATATGTATATTCTTTGGAACCTGTGTGAAGTCTGGAAAGACACAT
1 TCTACGCGGTTCTTAGGGACATATGTATATTCTTTGGAACCTGTGTGAAGTCTGGAAAGACACAT
35175 ACTTGATCCCTAGCATATGTATATGATTCTTAAAGAATTCTATGTGGTCCTTATGGACATCATTA
66 ACTTGATCCCTAGCATATGTATATGATTCTTAAAGAATTCTATGTGGTCCTTATGGACATCATTA
35240 TATGGCACTACGGTGCAAT
131 TATGGCACTACGGTGCAAT
35259 TCTACG
1 TCTACG
35265 GGGCACTTCG
Statistics
Matches: 153, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
149 153 1.00
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.35
Consensus pattern (149 bp):
TCTACGCGGTTCTTAGGGACATATGTATATTCTTTGGAACCTGTGTGAAGTCTGGAAAGACACAT
ACTTGATCCCTAGCATATGTATATGATTCTTAAAGAATTCTATGTGGTCCTTATGGACATCATTA
TATGGCACTACGGTGCAAT
Found at i:35287 original size:23 final size:23
Alignment explanation
Indices: 35243--35287 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
35233 ATCATTATAT
*
35243 GGCACTACGGTGCAATTCTACGG
1 GGCACTACGGTGCAATTATACGG
* *
35266 GGCACTTCGGTGCATTTATACG
1 GGCACTACGGTGCAATTATACG
35288 AGCTGTGGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.27
Consensus pattern (23 bp):
GGCACTACGGTGCAATTATACGG
Found at i:38439 original size:21 final size:21
Alignment explanation
Indices: 38413--38457 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
38403 GATTTCTGGG
* *
38413 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
38434 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
38455 CAA
1 CAA
38458 ACGAACAAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:39063 original size:18 final size:18
Alignment explanation
Indices: 39040--39074 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
39030 CTAGGAGATT
39040 TGAACATA-AATGATAAGA
1 TGAACATATAA-GATAAGA
39058 TGAACATATAAGATAAG
1 TGAACATATAAGATAAG
39075 CTAGATGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.54, C:0.06, G:0.17, T:0.23
Consensus pattern (18 bp):
TGAACATATAAGATAAGA
Found at i:39318 original size:2 final size:2
Alignment explanation
Indices: 39311--39348 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
39301 AATCTTGAGG
39311 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
39349 GAAATGAAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:40252 original size:149 final size:149
Alignment explanation
Indices: 39982--40285 Score: 554
Period size: 149 Copynumber: 2.0 Consensus size: 149
39972 GAGTCGAGGG
39982 TCTACGCGGTTCTTAGGGACATATGTATATTCTTTGGAACCTGTGTGAAGTCTGGAAAGACACAT
1 TCTACGCGGTTCTTAGGGACATATGTATATTCTTTGGAACCTGTGTGAAGTCTGGAAAGACACAT
* *
40047 ACTTGATCCCTAGCATATGTATATGATTCTTACAGAATTCTATATGGCCCTTATGGACATTATTA
66 ACTTGATCCCTAGCATATGTATATGATTCTTAAAGAATTCTATATGGCCCTTATGGACATCATTA
*
40112 TATGGCACTACGGTGTAAT
131 TATGGCACTACGGTGCAAT
*
40131 TCTACGTGGTTCTTAGGGACATATGTATATTCTTTGGAACCTGTGTGAAGTCTGGAAAGACACAT
1 TCTACGCGGTTCTTAGGGACATATGTATATTCTTTGGAACCTGTGTGAAGTCTGGAAAGACACAT
* *
40196 ACTTGATCCCTAGCATATGTATATGATTCTTAAAGAATTCTATGTGGTCCTTATGGACATCATTA
66 ACTTGATCCCTAGCATATGTATATGATTCTTAAAGAATTCTATATGGCCCTTATGGACATCATTA
40261 TATGGCACTACGGTGCAAT
131 TATGGCACTACGGTGCAAT
40280 TCTACG
1 TCTACG
40286 GGGCACTTCG
Statistics
Matches: 149, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
149 149 1.00
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.35
Consensus pattern (149 bp):
TCTACGCGGTTCTTAGGGACATATGTATATTCTTTGGAACCTGTGTGAAGTCTGGAAAGACACAT
ACTTGATCCCTAGCATATGTATATGATTCTTAAAGAATTCTATATGGCCCTTATGGACATCATTA
TATGGCACTACGGTGCAAT
Found at i:40308 original size:23 final size:23
Alignment explanation
Indices: 40264--40308 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
40254 ATCATTATAT
*
40264 GGCACTACGGTGCAATTCTACGG
1 GGCACTACGGTGCAATTATACGG
* *
40287 GGCACTTCGGTGCATTTATACG
1 GGCACTACGGTGCAATTATACG
40309 AGCTGTGGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.27
Consensus pattern (23 bp):
GGCACTACGGTGCAATTATACGG
Found at i:42471 original size:18 final size:19
Alignment explanation
Indices: 42450--42494 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
42440 ATTTAGACAT
42450 TTTGCATTTT-TTATTTTC
1 TTTGCATTTTGTTATTTTC
42468 TTTGCATTTTGTTATTTTC
1 TTTGCATTTTGTTATTTTC
*
42487 ATTGCATT
1 TTTGCATT
42495 CACATTAACT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
18 10 0.40
19 15 0.60
ACGTcount: A:0.13, C:0.11, G:0.09, T:0.67
Consensus pattern (19 bp):
TTTGCATTTTGTTATTTTC
Found at i:46300 original size:165 final size:164
Alignment explanation
Indices: 45866--46792 Score: 1146
Period size: 165 Copynumber: 5.6 Consensus size: 164
45856 TGCAGCTTAG
* * * **
45866 CTCAAGGCCAGAAGGGCTACCTGCCACC-AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGC
1 CTCAAGGCTAGAAGGGTTATCTGTTACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGC
* *
45930 ACATCATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTTAAGTTCGATTAC
66 ACATCATTTGCAGAATAGCTTAAGTCAAGAAGGGCTATCTGCCAAAGACCCTTGAGTTCGATTAC
* *
45995 ACTCAGCTTCAAGGGCATAACATTTACAGCATAA
131 ACTCAGCTTCAAGGGCACATCATTTACAGCATAA
* *
46029 CTCAAGGCTAGAAGGGTTATCTGTTAGCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGC
1 CTCAAGGCTAGAAGGGTTATCTGTTACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGC
* **
46094 ACATCATTTGCAGAATAGCTTAAGTCAAGAAGGGTTATCTGCCAAAGACCCCCGAGTTCGATTAC
66 ACATCATTTGCAGAATAGCTTAAGTCAAGAAGGGCTATCTGCCAAAGACCCTTGAGTTCGATTAC
* * *
46159 ACTCAGCTTCGAGGGCACATCATTTACAACATAG
131 ACTCAGCTTCAAGGGCACATCATTTACAGCATAA
*
46193 CTCAAGGCTAGAAGGGTTATCTGTGACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGG
1 CTCAAGGCTAGAAGGGTTATCTGTTACC-AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGG
* * *
46258 CACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTTAAGTTCGATTA
65 CACATCATTTGCAGAATAGCTTAAGTCAAGAAGGGCTATCTGCCAAAGACCCTTGAGTTCGATTA
* *
46323 CACTCAGCTTCAAGGGCATAACATTTACAGCATAA
130 CACTCAGCTTCAAGGGCACATCATTTACAGCATAA
* *
46358 CTCAAGGCTAGAAGGGTTATCTGTTAGCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGC
1 CTCAAGGCTAGAAGGGTTATCTGTTACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGC
* **
46423 ACATCAATTGCAGAAATAGCTTAAGTCAAGAAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTA
66 ACATCATTTGCAG-AATAGCTTAAGTCAAGAAGGGCTATCTGCCAAAGACCCTTGAGTTCGATTA
* *
46488 CACTCAGCTTCGAGGGCACATCATTTGCAGCATAA
130 CACTCAGCTTCAAGGGCACATCATTTACAGCATAA
* * * ** * * * *
46523 CTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGATTACACTCAGCTTCGAGG
1 CTCAAGGCTAGAAGGGTTATCTG-TTACCAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAG
* * * * * * *
46588 GCACATCATTTGCAGCACAACTTAAGTCTAGAAGGGTTGTCTGCCAACAAAAGACCTTTGAGTTC
64 GCACATCATTTGCAGAATAGCTTAAGTCAAGAAGGGCTATCTG-C--C-AAAGACCCTTGAGTTC
* *
46653 GATTACACTCAGCTCCAA-GGCACATCATTTACAGCATAG
125 GATTACACTCAGCTTCAAGGGCACATCATTTACAGCATAA
* * * * * ** * * * * *
46692 CTTAAGTCGAGTAGGGCTATCTG---CCAAAGACCCCCGAGTTCGATTACACTCAACTTCGAGGT
1 CTCAAGGCTAGAAGGGTTATCTGTTACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGG-
* * * *
46754 CATATCATTTACA-ACATAGCTCAAGGCAAGAAGGGCTAT
65 CACATCATTTGCAGA-ATAGCTTAAGTCAAGAAGGGCTAT
46793 TTGTCAATAA
Statistics
Matches: 665, Mismatches: 88, Indels: 20
0.86 0.11 0.03
Matches are distributed among these distances:
163 22 0.03
164 201 0.30
165 303 0.46
166 50 0.08
167 19 0.03
169 41 0.06
170 29 0.04
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (164 bp):
CTCAAGGCTAGAAGGGTTATCTGTTACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGC
ACATCATTTGCAGAATAGCTTAAGTCAAGAAGGGCTATCTGCCAAAGACCCTTGAGTTCGATTAC
ACTCAGCTTCAAGGGCACATCATTTACAGCATAA
Found at i:47403 original size:38 final size:37
Alignment explanation
Indices: 47362--47796 Score: 130
Period size: 38 Copynumber: 11.6 Consensus size: 37
47352 TTTTCTTATT
47362 TATATATATATTATATAGTTTGAAATCATTTTGAAAA
1 TATATATATATTATATAGTTTGAAATCATTTTGAAAA
* *
47399 T-TATATA-A-TATATGGTTTTTATAAAAT-ATTTTGAAAA
1 TATATATATATTATATAG---TT-TGAAATCATTTTGAAAA
* * **
47436 TATATA-ATA-TATAGT-TTTTG-AAT-TTTTTCTAAA
1 TATATATATATTATA-TAGTTTGAAATCATTTTGAAAA
* *
47469 TATATATA-A-TATATAGCTTTTAAAAACATTTTTGAAAA
1 TATATATATATTATATAG--TTTGAAATCA-TTTTGAAAA
* * * * *
47507 -ACATATATATTATA-ATTTTGAAAATTAGTTT----C
1 TATATATATATTATATAGTTTG-AAATCATTTTGAAAA
* * *
47539 TAAATATATATTATATAGTTTTGAAAATTAGTTTT-TAAA
1 TATATATATATTATATAG-TTTG-AAATCA-TTTTGAAAA
*
47578 -ATATATATATTATATAGTTTTGAAAATTAGTTTTGAAAA
1 TATATATATATTATATAG-TTTG-AAATCA-TTTTGAAAA
* * * **
47617 TTATTTTTTTAAAATATATGTTATATAGTTTTGAAAATTAGTTTTTAAA
1 -TA------T---ATATATATTATATAG-TTTG-AAATCATTTTGAAAA
47666 -ATATATATATTATATAGTTTGAAATCATTTTGAAAA
1 TATATATATATTATATAGTTTGAAATCATTTTGAAAA
* *
47702 T-TATATA-A-TATATGGTTTTTATAAAAT-ATTTTGAAAA
1 TATATATATATTATATAG---TT-TGAAATCATTTTGAAAA
* * *
47739 TATATAT-GA-TATATAGTTTTTAAAACATTTTCGAAAA
1 TATATATATATTATATAG-TTTGAAATCATTTT-GAAAA
* *
47776 CATGTATATATTATATAGTTT
1 TATATATATATTATATAGTTT
47797 TTGAAAAATA
Statistics
Matches: 308, Mismatches: 43, Indels: 93
0.69 0.10 0.21
Matches are distributed among these distances:
32 1 0.00
33 34 0.11
34 15 0.05
35 22 0.07
36 42 0.14
37 52 0.17
38 91 0.30
39 15 0.05
41 2 0.01
47 2 0.01
49 6 0.02
50 26 0.08
ACGTcount: A:0.42, C:0.02, G:0.08, T:0.48
Consensus pattern (37 bp):
TATATATATATTATATAGTTTGAAATCATTTTGAAAA
Found at i:47440 original size:36 final size:38
Alignment explanation
Indices: 47384--47798 Score: 149
Period size: 36 Copynumber: 10.9 Consensus size: 38
47374 ATATAGTTTG
*
47384 AAATCATTTTGAAAATTATATAATATATGGTTTTTATA
1 AAATCATTTTGAAAATTATATAATATATAGTTTTTATA
47422 AAAT-ATTTTGAAAA-TATATAATATATAG-TTTT-T-
1 AAATCATTTTGAAAATTATATAATATATAGTTTTTATA
* * ** *
47455 GAAT-TTTTTCTAAATATATATAATATATAGCTTTTA-A
1 AAATCATTTTGAAAAT-TATATAATATATAGTTTTTATA
** * *
47492 AAA-CATTTTTGAAAAACATAT-ATATTATA-ATTTT-GA
1 AAATCA-TTTTGAAAATTATATAATA-TATAGTTTTTATA
* * ** * *
47528 AAATTAGTTTCTAAA-TATATATTATATAG-TTTT-GA
1 AAATCATTTTGAAAATTATATAATATATAGTTTTTATA
* * * *
47563 AAATTAGTTTTTAAAATATATATATTATATAG-TTTT-GA
1 AAATCA-TTTTGAAAAT-TATATAATATATAGTTTTTATA
* * * *
47601 AAATTAGTTTTGAAAATTATTTTTTTAAAATATATGTTATATAGTTTTGA
1 AAATCA-TTTTGAAAATTA----TATAATATATA-G-T-T-T--TTAT-A
* * ** * *
47651 AAATTAGTTTTTAAAATATATATATTATATAG---TT-TG
1 AAATCATTTTGAAAATTATATA-A-TATATAGTTTTTATA
*
47687 AAATCATTTTGAAAATTATATAATATATGGTTTTTATA
1 AAATCATTTTGAAAATTATATAATATATAGTTTTTATA
*
47725 AAAT-ATTTTGAAAATATATATGATATATAG-TTTT-TA
1 AAATCATTTTGAAAAT-TATATAATATATAGTTTTTATA
*
47761 AAA-CATTTTCGAAAACATGTATATATTATATAGTTTTT
1 AAATCATTTT-G-AAA-AT-TATATAATATATAGTTTTT
47799 GAAAAATATA
Statistics
Matches: 292, Mismatches: 45, Indels: 78
0.70 0.11 0.19
Matches are distributed among these distances:
33 10 0.03
34 7 0.02
35 39 0.13
36 69 0.24
37 42 0.14
38 69 0.24
39 14 0.05
40 4 0.01
41 8 0.03
42 1 0.00
45 4 0.01
46 3 0.01
47 5 0.02
48 2 0.01
49 8 0.03
50 7 0.02
ACGTcount: A:0.42, C:0.02, G:0.08, T:0.48
Consensus pattern (38 bp):
AAATCATTTTGAAAATTATATAATATATAGTTTTTATA
Found at i:47490 original size:71 final size:73
Alignment explanation
Indices: 47363--47610 Score: 223
Period size: 71 Copynumber: 3.4 Consensus size: 73
47353 TTTCTTATTT
* * ** *
47363 ATATATATATTATATAG--TTTGAAATCATTTTGAAAAT-TATATAATATATGGTTTTTATAAAA
1 ATATATATA-TATATAGTTTTTGAAATTAGTTTCTAAATATATATAATATATAG-TTTTA-AAAA
47425 TA-TTTTGAAA
63 TAGTTTTGAAA
* *
47435 ATATATA-ATATATAGTTTTTG-AATT-TTTTCTAAATATATATAATATATAGCTTTTAAAAACA
1 ATATATATATATATAGTTTTTGAAATTAGTTTCTAAATATATATAATATATAG-TTTTAAAAATA
*
47497 TTTTTGAAA
65 GTTTTGAAA
* * *
47506 A-ACATATATATTATA-ATTTTGAAAATTAGTTTCTAAATATATAT--TATATAGTTTTGAAAAT
1 ATATATATATA-TATAGTTTTTG-AAATTAGTTTCTAAATATATATAATATATAGTTTT-AAAAA
*
47567 TAGTTTTTAAA
63 TAGTTTTGAAA
47578 ATATATATATTATATAG-TTTTGAAAATTAGTTT
1 ATATATATA-TATATAGTTTTTG-AAATTAGTTT
47611 TGAAAATTAT
Statistics
Matches: 149, Mismatches: 14, Indels: 25
0.79 0.07 0.13
Matches are distributed among these distances:
70 24 0.16
71 43 0.29
72 35 0.23
73 30 0.20
74 17 0.11
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.48
Consensus pattern (73 bp):
ATATATATATATATAGTTTTTGAAATTAGTTTCTAAATATATATAATATATAGTTTTAAAAATAG
TTTTGAAA
Found at i:47630 original size:14 final size:13
Alignment explanation
Indices: 47554--47667 Score: 64
Period size: 13 Copynumber: 9.0 Consensus size: 13
47544 ATATATTATA
47554 TAGTTTTGAAAAT
1 TAGTTTTGAAAAT
*
47567 TAGTTTTTAAAAT
1 TAGTTTTGAAAAT
*
47580 ATA-TATATT--ATA-
1 -TAGT-T-TTGAAAAT
47592 TAGTTTTGAAAAT
1 TAGTTTTGAAAAT
47605 TAGTTTTGAAAAT
1 TAGTTTTGAAAAT
* *
47618 TATTTTTTTAAAAT
1 TA-GTTTTGAAAAT
* *
47632 ATA-TGTT--ATA-
1 -TAGTTTTGAAAAT
47642 TAGTTTTGAAAAT
1 TAGTTTTGAAAAT
*
47655 TAGTTTTTAAAAT
1 TAGTTTTGAAAAT
47668 ATATATATTA
Statistics
Matches: 78, Mismatches: 10, Indels: 26
0.68 0.09 0.23
Matches are distributed among these distances:
9 2 0.03
10 5 0.06
11 5 0.06
12 5 0.06
13 45 0.58
14 12 0.15
15 4 0.05
ACGTcount: A:0.39, C:0.00, G:0.10, T:0.51
Consensus pattern (13 bp):
TAGTTTTGAAAAT
Found at i:47645 original size:50 final size:51
Alignment explanation
Indices: 47554--47667 Score: 185
Period size: 50 Copynumber: 2.3 Consensus size: 51
47544 ATATATTATA
47554 TAGTTTTGAAAATTAGTTTTTAAAATATATATATTATATAGTTTTGAAAAT
1 TAGTTTTGAAAATTAGTTTTTAAAATATATATATTATATAGTTTTGAAAAT
* * *
47605 TAGTTTTGAAAATTATTTTTTTAAA-ATATATGTTATATAGTTTTGAAAAT
1 TAGTTTTGAAAATTAGTTTTTAAAATATATATATTATATAGTTTTGAAAAT
*
47655 TAGTTTTTAAAAT
1 TAGTTTTGAAAAT
47668 ATATATATTA
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
50 36 0.61
51 23 0.39
ACGTcount: A:0.39, C:0.00, G:0.10, T:0.51
Consensus pattern (51 bp):
TAGTTTTGAAAATTAGTTTTTAAAATATATATATTATATAGTTTTGAAAAT
Found at i:47646 original size:88 final size:84
Alignment explanation
Indices: 47521--47705 Score: 291
Period size: 88 Copynumber: 2.2 Consensus size: 84
47511 ATATATTATA
47521 ATTTTGAAAATTA-GTTTCTAAATATATATTATATAGTTTTGAAAATTAGTTTTTAAAATATATA
1 ATTTTGAAAATTATGTTTCTAAATATATATTATATAGTTTTGAAAATTAGTTTTTAAAATATATA
*
47585 TATTATATAGTTTTGAAAATT
66 TATTATATAG-TTTG-AAATC
* * *
47606 AGTTTTGAAAATTATTTTTTTAAAATATATGTTATATAGTTTTGAAAATTAGTTTTTAAAATATA
1 A-TTTTGAAAATTATGTTTCT-AAATATATATTATATAGTTTTGAAAATTAGTTTTTAAAATATA
47671 TATATTATATAGTTTGAAATC
64 TATATTATATAGTTTGAAATC
47692 ATTTTGAAAATTAT
1 ATTTTGAAAATTAT
47706 ATAATATATG
Statistics
Matches: 93, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
85 14 0.15
86 17 0.18
87 8 0.09
88 54 0.58
ACGTcount: A:0.41, C:0.01, G:0.09, T:0.50
Consensus pattern (84 bp):
ATTTTGAAAATTATGTTTCTAAATATATATTATATAGTTTTGAAAATTAGTTTTTAAAATATATA
TATTATATAGTTTGAAATC
Found at i:47818 original size:27 final size:29
Alignment explanation
Indices: 47766--47832 Score: 86
Period size: 27 Copynumber: 2.4 Consensus size: 29
47756 TTTTAAAACA
* * *
47766 TTTTCGAAAACATGTATATATTATAT-AG
1 TTTTTGAAAACATATATATAATATATAAG
47794 TTTTTGAAAA-ATATATATAATATATAAG
1 TTTTTGAAAACATATATATAATATATAAG
47822 TTTTT-AAAACA
1 TTTTTGAAAACA
47833 ATTTTTTAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
27 17 0.50
28 17 0.50
ACGTcount: A:0.45, C:0.04, G:0.07, T:0.43
Consensus pattern (29 bp):
TTTTTGAAAACATATATATAATATATAAG
Found at i:47850 original size:66 final size:63
Alignment explanation
Indices: 47729--47866 Score: 165
Period size: 66 Copynumber: 2.2 Consensus size: 63
47719 TTTATAAAAT
* *
47729 ATTTTG-AAAATATATATGATATATAGTTTTTAAAACATTTTCGAAAACATGTATATATTATATA
1 ATTTTGAAAAATATATATAATATATAGTTTTTAAAACATTTTCG-AAACA-ATATATATTATATA
* **
47793 GTTTTTGAAAAATATATATAATATATAAGTTTTTAAAACAATTTT-TTAA-AATATATATTATAT
1 -ATTTTGAAAAATATATATAATATAT-AGTTTTTAAAAC-ATTTTCGAAACAATATATATTATAT
47856 A
63 A
47857 ATTTTGAAAA
1 ATTTTGAAAA
47867 TTATTTTTTA
Statistics
Matches: 64, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
63 9 0.14
64 13 0.20
65 6 0.09
66 19 0.30
67 12 0.19
68 5 0.08
ACGTcount: A:0.46, C:0.03, G:0.07, T:0.45
Consensus pattern (63 bp):
ATTTTGAAAAATATATATAATATATAGTTTTTAAAACATTTTCGAAACAATATATATTATATA
Found at i:47883 original size:36 final size:37
Alignment explanation
Indices: 47801--47888 Score: 115
Period size: 36 Copynumber: 2.4 Consensus size: 37
47791 TAGTTTTTGA
*
47801 AAAATATATATAATATATAAGTTTTTAAAACAATTTTTT
1 AAAATATATAT--TATATAAGTTTTGAAAACAATTTTTT
**
47840 AAAATATATATTATATAA-TTTTGAAAATTATTTTTT
1 AAAATATATATTATATAAGTTTTGAAAACAATTTTTT
*
47876 AACATATATATTA
1 AAAATATATATTA
47889 GAGAAAATCG
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
36 27 0.60
37 7 0.16
39 11 0.24
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (37 bp):
AAAATATATATTATATAAGTTTTGAAAACAATTTTTT
Found at i:48056 original size:21 final size:20
Alignment explanation
Indices: 48029--48127 Score: 81
Period size: 21 Copynumber: 4.8 Consensus size: 20
48019 AATCAGTTTC
48029 CAAAATCGCAACGCGATTCTT
1 CAAAATCGCAACGCGATT-TT
* * * *
48050 GAAAATCGCAATGCGATAGTA
1 CAAAATCGCAACGCGAT-TTT
* **
48071 CAAATTCGCATTGCGATTTT
1 CAAAATCGCAACGCGATTTT
* *
48091 CCAAAATCGCAACGCGAATAT
1 -CAAAATCGCAACGCGATTTT
*
48112 GAAAATCGCAACGCGA
1 CAAAATCGCAACGCGA
48128 ACACATAAAT
Statistics
Matches: 61, Mismatches: 15, Indels: 5
0.75 0.19 0.06
Matches are distributed among these distances:
20 16 0.26
21 45 0.74
ACGTcount: A:0.37, C:0.23, G:0.18, T:0.21
Consensus pattern (20 bp):
CAAAATCGCAACGCGATTTT
Found at i:48167 original size:20 final size:20
Alignment explanation
Indices: 48094--48267 Score: 190
Period size: 20 Copynumber: 8.7 Consensus size: 20
48084 CGATTTTCCA
* ** *
48094 AAATCGCAACGCGAATATGA
1 AAATCGCAACGCGTATCCGT
* *
48114 AAATCGCAACGCG-AACACAT
1 AAATCGCAACGCGTATC-CGT
48134 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
**
48154 AAATCGCAACGCGTATGGGT
1 AAATCGCAACGCGTATCCGT
*
48174 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
* *
48194 ATATCGCAACGCGTATCGGT
1 AAATCGCAACGCGTATCCGT
* *
48214 AAATCGCAACG-ATAATCCAT
1 AAATCGCAACGCGT-ATCCGT
48234 AAAATCGCAACGCGTATCCGT
1 -AAATCGCAACGCGTATCCGT
48255 AAATCGCAACGCG
1 AAATCGCAACGCG
48268 ATATTTAAAG
Statistics
Matches: 128, Mismatches: 21, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
19 2 0.02
20 107 0.84
21 18 0.14
22 1 0.01
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.18
Consensus pattern (20 bp):
AAATCGCAACGCGTATCCGT
Found at i:48689 original size:33 final size:33
Alignment explanation
Indices: 48650--48720 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
48640 TTCACTTAGA
*
48650 TTTCATTTCGCGTTACGATTCTGTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
* *
48683 TTTCATTTCGCGTTGCTATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
48716 TTTCA
1 TTTCA
48721 AGTTAGTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.11, C:0.23, G:0.18, T:0.48
Consensus pattern (33 bp):
TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
Found at i:48857 original size:41 final size:41
Alignment explanation
Indices: 48799--48876 Score: 147
Period size: 41 Copynumber: 1.9 Consensus size: 41
48789 TTGCAGAAGA
*
48799 GTCGCAACGAGATAAATGAAAATCGCAACGAGAGAATGACT
1 GTCGCAACGAGAGAAATGAAAATCGCAACGAGAGAATGACT
48840 GTCGCAACGAGAGAAATGAAAATCGCAACGAGAGAAT
1 GTCGCAACGAGAGAAATGAAAATCGCAACGAGAGAAT
48877 CGCAACGCGA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.45, C:0.17, G:0.26, T:0.13
Consensus pattern (41 bp):
GTCGCAACGAGAGAAATGAAAATCGCAACGAGAGAATGACT
Found at i:48873 original size:21 final size:21
Alignment explanation
Indices: 48800--48875 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
48790 TGCAGAAGAG
*
48800 TCGCAACGAGATAAATGAAAA
1 TCGCAACGAGAGAAATGAAAA
***
48821 TCGCAACGAGAG-AATGACTG
1 TCGCAACGAGAGAAATGAAAA
48841 TCGCAACGAGAGAAATGAAAA
1 TCGCAACGAGAGAAATGAAAA
48862 TCGCAACGAGAGAA
1 TCGCAACGAGAGAA
48876 TCGCAACGCG
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
20 17 0.36
21 30 0.64
ACGTcount: A:0.46, C:0.17, G:0.25, T:0.12
Consensus pattern (21 bp):
TCGCAACGAGAGAAATGAAAA
Found at i:48879 original size:14 final size:14
Alignment explanation
Indices: 48860--48916 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
48850 GAGAAATGAA
48860 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
48874 AATCGCAACGCGATATGAA
1 AATCGCAA--CG--A-GAG
48893 AATCGCAACGAGAG
1 AATCGCAACGAGAG
48907 AATCGCAACG
1 AATCGCAACG
48917 CGAAACCAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.28
ACGTcount: A:0.42, C:0.23, G:0.25, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:48895 original size:33 final size:33
Alignment explanation
Indices: 48855--48919 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
48845 AACGAGAGAA
48855 ATGAAAATCGCAACGAGAGAATCGCAACGCGAT
1 ATGAAAATCGCAACGAGAGAATCGCAACGCGAT
48888 ATGAAAATCGCAACGAGAGAATCGCAACGCGA
1 ATGAAAATCGCAACGAGAGAATCGCAACGCGA
48920 AACCAAAATC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.43, C:0.22, G:0.25, T:0.11
Consensus pattern (33 bp):
ATGAAAATCGCAACGAGAGAATCGCAACGCGAT
Found at i:48928 original size:33 final size:33
Alignment explanation
Indices: 48858--48932 Score: 123
Period size: 33 Copynumber: 2.3 Consensus size: 33
48848 GAGAGAAATG
* **
48858 AAAATCGCAACGAGAGAATCGCAACGCGATATG
1 AAAATCGCAACGAGAGAATCGCAACGCGAAACC
48891 AAAATCGCAACGAGAGAATCGCAACGCGAAACC
1 AAAATCGCAACGAGAGAATCGCAACGCGAAACC
48924 AAAATCGCA
1 AAAATCGCA
48933 TTGCGATTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.45, C:0.24, G:0.21, T:0.09
Consensus pattern (33 bp):
AAAATCGCAACGAGAGAATCGCAACGCGAAACC
Found at i:48950 original size:19 final size:19
Alignment explanation
Indices: 48928--48997 Score: 122
Period size: 19 Copynumber: 3.7 Consensus size: 19
48918 GAAACCAAAA
*
48928 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
48947 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
48966 TCGCGTTGCGATTGTCATT
1 TCGCGTTGCGATTTTCATT
48985 TCGCGTTGCGATT
1 TCGCGTTGCGATT
48998 CTCTCGTTGC
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 49 1.00
ACGTcount: A:0.11, C:0.21, G:0.23, T:0.44
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:50640 original size:14 final size:14
Alignment explanation
Indices: 50621--50656 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
50611 ATTGTTTAAT
50621 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
50635 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
50649 TGATTTGT
1 TGATTTGT
50657 GTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:50779 original size:19 final size:19
Alignment explanation
Indices: 50763--50860 Score: 143
Period size: 19 Copynumber: 5.4 Consensus size: 19
50753 AAAAATGACT
50763 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
50782 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
50801 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
50815 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
50834 ATCGCAATGCGGAAATGAAA
1 ATCGCAATGC-GAAATGAAA
50854 ATCGCAA
1 ATCGCAA
50861 CGAGAGAATC
Statistics
Matches: 71, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
14 10 0.14
15 1 0.01
16 2 0.03
17 2 0.03
18 1 0.01
19 39 0.55
20 16 0.23
ACGTcount: A:0.46, C:0.17, G:0.22, T:0.14
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:50892 original size:53 final size:53
Alignment explanation
Indices: 50763--50878 Score: 225
Period size: 53 Copynumber: 2.2 Consensus size: 53
50753 AAAAATGACT
50763 ATCGCAATGCGAAATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
50815 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
50868 ATCGCAATGCG
1 ATCGCAATGCG
50879 TTTATAATTT
Statistics
Matches: 63, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
52 29 0.46
53 34 0.54
ACGTcount: A:0.44, C:0.18, G:0.24, T:0.14
Consensus pattern (53 bp):
ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
Found at i:50922 original size:33 final size:33
Alignment explanation
Indices: 50885--51137 Score: 307
Period size: 33 Copynumber: 7.5 Consensus size: 33
50875 TGCGTTTATA
50885 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTC
50918 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTC
*
50951 ATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTC
1 ATTTCGCATTGCGA--TTC-TCTCG--TTGCGATT-T-TC
* * * * *
50991 GTTGCG-ATTTTC-ATT-TCGCATTGCGATTTTC
1 ATTTCGCA-TTGCGATTCTCTCGTTGCGATTTTC
51022 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTC
51055 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTC
* *
51088 ATTTCCGCATTGCGATTTTCAT-GTTGGGATTTTC
1 ATTT-CGCATTGCGATTCTC-TCGTTGCGATTTTC
*
51122 ATTTCGCGTTGCGATT
1 ATTTCGCATTGCGATT
51138 GTAATTTCCG
Statistics
Matches: 192, Mismatches: 15, Indels: 26
0.82 0.06 0.11
Matches are distributed among these distances:
31 9 0.05
32 5 0.03
33 117 0.61
34 29 0.15
35 6 0.03
36 4 0.02
37 2 0.01
38 8 0.04
39 3 0.02
40 9 0.05
ACGTcount: A:0.13, C:0.23, G:0.19, T:0.46
Consensus pattern (33 bp):
ATTTCGCATTGCGATTCTCTCGTTGCGATTTTC
Found at i:50931 original size:19 final size:19
Alignment explanation
Indices: 50907--51137 Score: 224
Period size: 19 Copynumber: 13.4 Consensus size: 19
50897 GATTCTCTCG
50907 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
50926 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
50940 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
50959 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
50978 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
50992 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
51011 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
51030 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
51044 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
51063 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
51077 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
51097 TTGCGATTTTCA--T-G--
1 TTGCGATTTTCATTTCGCA
* *
51111 TTGGGATTTTCATTTCGCG
1 TTGCGATTTTCATTTCGCA
51130 TTGCGATT
1 TTGCGATT
51138 GTAATTTCCG
Statistics
Matches: 176, Mismatches: 10, Indels: 52
0.74 0.04 0.22
Matches are distributed among these distances:
14 35 0.20
16 30 0.17
17 27 0.15
18 3 0.02
19 69 0.39
20 12 0.07
ACGTcount: A:0.13, C:0.22, G:0.19, T:0.46
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:50963 original size:52 final size:52
Alignment explanation
Indices: 50907--51070 Score: 328
Period size: 52 Copynumber: 3.2 Consensus size: 52
50897 GATTCTCTCG
50907 TTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCA
50959 TTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCA
51011 TTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCA
51063 TTGCGATT
1 TTGCGATT
51071 CTCTCGTTGC
Statistics
Matches: 112, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 112 1.00
ACGTcount: A:0.13, C:0.23, G:0.18, T:0.46
Consensus pattern (52 bp):
TTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCA
Found at i:50985 original size:85 final size:84
Alignment explanation
Indices: 50885--51137 Score: 368
Period size: 85 Copynumber: 3.0 Consensus size: 84
50875 TGCGTTTATA
50885 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTT
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATT-TCTCGTTGCGATTTT
*
50950 CATTTCGCATTGCGATTTTC
65 CATTTCGCGTTGCGATTTTC
* * *
50970 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTT-TCATTTCGCA-TTG
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTCTCGTTGCG-ATTTT
*
51033 CGATTCTCTCGTTGCGATTTTC
65 C-ATT-TCGCGTTGCGATTTTC
*
51055 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTT-TCATGTTGGGATT
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTT-CGCATTGCGATTTCTC--GTTGCGATT
51119 TTCATTTCGCGTTGCGATT
63 TTCATTTCGCGTTGCGATT
51138 GTAATTTCCG
Statistics
Matches: 151, Mismatches: 10, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
83 9 0.06
84 5 0.03
85 100 0.66
86 27 0.18
87 4 0.03
88 6 0.04
ACGTcount: A:0.13, C:0.23, G:0.19, T:0.46
Consensus pattern (84 bp):
ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTCTCGTTGCGATTTTC
ATTTCGCGTTGCGATTTTC
Found at i:53647 original size:24 final size:24
Alignment explanation
Indices: 53613--53659 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
53603 CTGAAACATC
53613 ATCAAAATCCGTG-TATTGACCAAT
1 ATCAAAATCCG-GATATTGACCAAT
*
53637 ATCAAAGTCCGGATATTGACCAA
1 ATCAAAATCCGGATATTGACCAA
53660 GACCAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (24 bp):
ATCAAAATCCGGATATTGACCAAT
Found at i:54370 original size:20 final size:20
Alignment explanation
Indices: 54342--54571 Score: 228
Period size: 20 Copynumber: 11.5 Consensus size: 20
54332 AAATTTCAGT
* * *
54342 GTTGTGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCGC
**
54362 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCGC
* *
54382 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCGC
**
54402 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCGC
*
54422 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
* *
54442 GTTGCGATATACGGATACGC
1 GTTGCGATTTACGGATTCGC
* * ** *
54462 ATTACGATTTACCCATACGC
1 GTTGCGATTTACGGATTCGC
* *
54482 GTTGCGATTTACGGATACAC
1 GTTGCGATTTACGGATTCGC
*
54502 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
*
54522 GTTGCGATTTATGTG-TTCGC
1 GTTGCGATTTACG-GATTCGC
* **
54542 GTTGCGATTTTCATATTCGC
1 GTTGCGATTTACGGATTCGC
54562 GTTGCGATTT
1 GTTGCGATTT
54572 TGGAAAATCG
Statistics
Matches: 180, Mismatches: 28, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
20 179 0.99
21 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.37
Consensus pattern (20 bp):
GTTGCGATTTACGGATTCGC
Found at i:54588 original size:21 final size:21
Alignment explanation
Indices: 54558--54640 Score: 78
Period size: 21 Copynumber: 4.0 Consensus size: 21
54548 ATTTTCATAT
*
54558 TCGCGTTGCGATTTTGGAAAA
1 TCGCATTGCGATTTTGGAAAA
* * * **
54579 TCGCAATGCGAATTTGTACTA
1 TCGCATTGCGATTTTGGAAAA
*
54600 TCGCATTGCGATTTT-CAAGAA
1 TCGCATTGCGATTTTGGAA-AA
*
54621 TCGCGTTGCGATTTTGGAAA
1 TCGCATTGCGATTTTGGAAA
54641 CTGATTTGCG
Statistics
Matches: 47, Mismatches: 13, Indels: 4
0.73 0.20 0.06
Matches are distributed among these distances:
20 1 0.02
21 44 0.94
22 2 0.04
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTTGGAAAA
Found at i:54631 original size:42 final size:43
Alignment explanation
Indices: 54538--54636 Score: 100
Period size: 42 Copynumber: 2.4 Consensus size: 43
54528 ATTTATGTGT
* *
54538 TCGCGTTGCG-ATTT-TCATATTCGCGTTGCGATTTTGGAAAA
1 TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGCAAAA
**
54579 TCGCAATGCGAATTTGT-ACTA-TCGCATTGCGATTTT-CAAGAA
1 TCGCGTTGCGAATTTGTCA-TATTCGCATTGCGATTTTGCAA-AA
*
54621 TCGCGTTGCGATTTTG
1 TCGCGTTGCGAATTTG
54637 GAAACTGATT
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
41 10 0.21
42 34 0.72
43 3 0.06
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.37
Consensus pattern (43 bp):
TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGCAAAA
Found at i:54811 original size:3 final size:3
Alignment explanation
Indices: 54805--54880 Score: 68
Period size: 3 Copynumber: 24.7 Consensus size: 3
54795 TAAATTTTTT
54805 TTA TTA -TA TTAA TTA TTA TTA TTA TTTA TTA TTA TTTA TT- TTA TT-
1 TTA TTA TTA TT-A TTA TTA TTA TTA -TTA TTA TTA -TTA TTA TTA TTA
* *
54850 TTA TTA TTTA TTA CTTA TTT TTA TTT TTA TT
1 TTA TTA -TTA TTA -TTA TTA TTA TTA TTA TT
54881 TTTCTTTTCT
Statistics
Matches: 61, Mismatches: 4, Indels: 16
0.75 0.05 0.20
Matches are distributed among these distances:
2 6 0.10
3 40 0.66
4 15 0.25
ACGTcount: A:0.28, C:0.01, G:0.00, T:0.71
Consensus pattern (3 bp):
TTA
Found at i:54824 original size:10 final size:10
Alignment explanation
Indices: 54805--54880 Score: 83
Period size: 10 Copynumber: 7.9 Consensus size: 10
54795 TAAATTTTTT
54805 TTATTATATTAA
1 TTATT-TATT-A
54817 TTA-TTATTA
1 TTATTTATTA
54826 TTATTTATTA
1 TTATTTATTA
54836 TTATTTATT-
1 TTATTTATTA
54845 TTA-TT-TTA
1 TTATTTATTA
54853 TTATTTATTA
1 TTATTTATTA
54863 CTTATTT-TTA
1 -TTATTTATTA
54873 TT-TTTATT
1 TTATTTATT
54881 TTTCTTTTCT
Statistics
Matches: 58, Mismatches: 0, Indels: 15
0.79 0.00 0.21
Matches are distributed among these distances:
7 2 0.03
8 8 0.14
9 13 0.22
10 25 0.43
11 7 0.12
12 3 0.05
ACGTcount: A:0.28, C:0.01, G:0.00, T:0.71
Consensus pattern (10 bp):
TTATTTATTA
Found at i:54848 original size:40 final size:40
Alignment explanation
Indices: 54798--54881 Score: 116
Period size: 40 Copynumber: 2.1 Consensus size: 40
54788 ATAATTTTAA
*
54798 ATTTTTTTTATTATATTAATTATTA-TTATTATTTATTATT
1 ATTTATTTTATTATATTAATTATTACTTATT-TTTATTATT
* * *
54838 ATTTATTTTATTTTATTATTTATTACTTATTTTTATTTTT
1 ATTTATTTTATTATATTAATTATTACTTATTTTTATTATT
54878 ATTT
1 ATTT
54882 TTCTTTTCTC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
40 34 0.87
41 5 0.13
ACGTcount: A:0.26, C:0.01, G:0.00, T:0.73
Consensus pattern (40 bp):
ATTTATTTTATTATATTAATTATTACTTATTTTTATTATT
Found at i:54853 original size:17 final size:18
Alignment explanation
Indices: 54816--54882 Score: 77
Period size: 19 Copynumber: 3.7 Consensus size: 18
54806 TATTATATTA
54816 ATTA-TTATTATTATTTATT
1 ATTATTTATT-TTATTT-TT
54835 ATTATTTATTTTA-TTTT
1 ATTATTTATTTTATTTTT
54852 ATTATTTATTACTTATTTTT
1 ATTATTTATT--TTATTTTT
54872 ATT-TTTATTTT
1 ATTATTTATTTT
54883 TCTTTTCTCA
Statistics
Matches: 44, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
17 14 0.32
18 2 0.05
19 16 0.36
20 12 0.27
ACGTcount: A:0.25, C:0.01, G:0.00, T:0.73
Consensus pattern (18 bp):
ATTATTTATTTTATTTTT
Found at i:54867 original size:7 final size:6
Alignment explanation
Indices: 54805--54880 Score: 68
Period size: 7 Copynumber: 12.3 Consensus size: 6
54795 TAAATTTTTT
54805 TTATTA -TATTAA TTATTA TTATTA TTTATTA TTATTTA TT-TTA TT-TTA
1 TTATTA TTATT-A TTATTA TTATTA -TTATTA TTA-TTA TTATTA TTATTA
* *
54853 TTATTTA TTACTTA TTTTTA TTTTTA TT
1 TTA-TTA TTA-TTA TTATTA TTATTA TT
54881 TTTCTTTTCT
Statistics
Matches: 62, Mismatches: 2, Indels: 12
0.82 0.03 0.16
Matches are distributed among these distances:
5 14 0.23
6 22 0.35
7 26 0.42
ACGTcount: A:0.28, C:0.01, G:0.00, T:0.71
Consensus pattern (6 bp):
TTATTA
Found at i:54888 original size:17 final size:17
Alignment explanation
Indices: 54817--54888 Score: 67
Period size: 17 Copynumber: 4.1 Consensus size: 17
54807 ATTATATTAA
* *
54817 TTATTA-TTATTATTTA
1 TTATTATTTATTTTTTT
*
54833 TTATTATTTATTTTATT
1 TTATTATTTATTTTTTT
54850 TTATTATTTATTACTTATTT
1 TTATTATTTATT--TT-TTT
54870 TTATT-TTTATTTTTCTT
1 TTATTATTTATTTTT-TT
54887 TT
1 TT
54889 CTCATTTTGT
Statistics
Matches: 47, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
16 7 0.15
17 25 0.53
19 8 0.17
20 7 0.15
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (17 bp):
TTATTATTTATTTTTTT
Found at i:59500 original size:23 final size:23
Alignment explanation
Indices: 59466--59524 Score: 84
Period size: 23 Copynumber: 2.6 Consensus size: 23
59456 CATTTTCAAA
* *
59466 TATAATATTATATTT-TTTAGTAT
1 TATAATAATATATTTAATTA-TAT
59489 TATAATAATATATTTAATTATAT
1 TATAATAATATATTTAATTATAT
59512 TATAATAATATAT
1 TATAATAATATAT
59525 GATATGTATT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
23 30 0.91
24 3 0.09
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (23 bp):
TATAATAATATATTTAATTATAT
Found at i:59501 original size:28 final size:26
Alignment explanation
Indices: 59470--59552 Score: 73
Period size: 28 Copynumber: 3.2 Consensus size: 26
59460 TTCAAATATA
*
59470 ATATTATATTTTTTAGTATTATAATAAT
1 ATATTATA-TTATTA-TATTATAATAAT
59498 ATATT-TA--ATTATATTATAATAAT
1 ATATTATATTATTATATTATAATAAT
* * *
59521 ATATGATATGTATTCTTATTTTAATAAT
1 ATATTATAT-TATT-ATATTATAATAAT
59549 ATAT
1 ATAT
59553 AATAAAAATA
Statistics
Matches: 46, Mismatches: 4, Indels: 10
0.77 0.07 0.17
Matches are distributed among these distances:
23 16 0.35
24 5 0.11
27 5 0.11
28 20 0.43
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.54
Consensus pattern (26 bp):
ATATTATATTATTATATTATAATAAT
Found at i:59929 original size:31 final size:31
Alignment explanation
Indices: 59863--59921 Score: 95
Period size: 29 Copynumber: 2.0 Consensus size: 31
59853 AATTTAAGGA
*
59863 AAAATGGTTTTTGGACTTGAATTGAATTTAC
1 AAAATGGTATTTGGACTTGAATTGAATTTAC
59894 AAAAT-GTATTTGGACTT-AATTGAATTTA
1 AAAATGGTATTTGGACTTGAATTGAATTTA
59922 TTCAAAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 11 0.41
30 11 0.41
31 5 0.19
ACGTcount: A:0.36, C:0.05, G:0.17, T:0.42
Consensus pattern (31 bp):
AAAATGGTATTTGGACTTGAATTGAATTTAC
Found at i:60141 original size:21 final size:21
Alignment explanation
Indices: 60115--60156 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
60105 ATTTGAATAT
*
60115 TATGAAGGGGTATCGATTCCC
1 TATGAAGGGGTACCGATTCCC
60136 TATGAAGGGGTACCGATTCCC
1 TATGAAGGGGTACCGATTCCC
60157 CCCATTCTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (21 bp):
TATGAAGGGGTACCGATTCCC
Found at i:60481 original size:34 final size:32
Alignment explanation
Indices: 60442--60511 Score: 104
Period size: 34 Copynumber: 2.1 Consensus size: 32
60432 TTTTGTAAAG
*
60442 GGGAAAGGTTCTAGCTTAGCCCGTGTAAAAGCTA
1 GGGAAAGGTTCTAGCTTAGCCCG-G-AAAAACTA
*
60476 GGGAAAGGTTCTAGTTTAGCCCGGAAAAACTA
1 GGGAAAGGTTCTAGCTTAGCCCGGAAAAACTA
60508 GGGA
1 GGGA
60512 GTTGTAAGGT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
32 11 0.32
33 1 0.03
34 22 0.65
ACGTcount: A:0.31, C:0.16, G:0.31, T:0.21
Consensus pattern (32 bp):
GGGAAAGGTTCTAGCTTAGCCCGGAAAAACTA
Found at i:66511 original size:32 final size:32
Alignment explanation
Indices: 66432--66511 Score: 85
Period size: 31 Copynumber: 2.6 Consensus size: 32
66422 GTTAACCTAA
66432 AAGA-ACATCTTAGGG-CCTGAGAGCCTACCC
1 AAGACACATCTTAGGGCCCTGAGAGCCTACCC
* * * * *
66462 AAGATAGATTTTGGGGCCCTGAG-GCCTACCT
1 AAGACACATCTTAGGGCCCTGAGAGCCTACCC
66493 AAGAACACATCTTAGGGCC
1 AAG-ACACATCTTAGGGCC
66512 GCAGGGCCTA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
30 4 0.10
31 18 0.46
32 17 0.44
ACGTcount: A:0.29, C:0.26, G:0.25, T:0.20
Consensus pattern (32 bp):
AAGACACATCTTAGGGCCCTGAGAGCCTACCC
Found at i:70367 original size:13 final size:13
Alignment explanation
Indices: 70349--70375 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
70339 CAAATACCGT
70349 AAAATGATTTTCA
1 AAAATGATTTTCA
70362 AAAATGATTTTCA
1 AAAATGATTTTCA
70375 A
1 A
70376 GGAATATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.37
Consensus pattern (13 bp):
AAAATGATTTTCA
Found at i:72564 original size:61 final size:60
Alignment explanation
Indices: 72431--72610 Score: 186
Period size: 61 Copynumber: 3.0 Consensus size: 60
72421 GTATGACCCT
* ** * * **
72431 CATTTTAAATT-GATCCCTAAACTTTTAAATATCCTAATTTCATCCTTAAATTATGGTAAA
1 CATTATAAATTAG-TCCCTAAACTTTTAAATATTTTAATTTCATCCTTAAACTATGATTTA
* * *
72491 CATTATAGATTAGTCCTTAGAACTTTTAAATATTTTAATTTCATCCTTAAACTATGATTTT
1 CATTATAAATTAGTCCCTA-AACTTTTAAATATTTTAATTTCATCCTTAAACTATGATTTA
* * * *
72552 CATTCTAAATTAGTCCCTAAACTTTTTGAATATTTCAATTTCAT-CTCAAACTAT-ATTTA
1 CATTATAAATTAGTCCCTAAAC-TTTTAAATATTTTAATTTCATCCTTAAACTATGATTTA
72611 TATACTAATC
Statistics
Matches: 100, Mismatches: 17, Indels: 7
0.81 0.14 0.06
Matches are distributed among these distances:
59 4 0.04
60 26 0.26
61 70 0.70
ACGTcount: A:0.34, C:0.16, G:0.05, T:0.44
Consensus pattern (60 bp):
CATTATAAATTAGTCCCTAAACTTTTAAATATTTTAATTTCATCCTTAAACTATGATTTA
Found at i:72848 original size:59 final size:60
Alignment explanation
Indices: 72719--72856 Score: 163
Period size: 59 Copynumber: 2.3 Consensus size: 60
72709 TTTGGATGAA
* * * *
72719 TTTGAGGATGAAATTGGAATATTCAAAAGTTTTGTGACTAATATAGAAAGAGGGTAATAG
1 TTTGAGGATGAAATTAGAATATTCAAAAGTTATGAGACTAATATAGAAAGAGAGTAATAG
* * * * *
72779 TTT-AGGGATGAAATTAGATTGTTCAAAAGTTAT-AGACTAATTTAGAATGAGAGTCATAG
1 TTTGA-GGATGAAATTAGAATATTCAAAAGTTATGAGACTAATATAGAAAGAGAGTAATAG
*
72838 TTTGATGATGAAATTAGAA
1 TTTGAGGATGAAATTAGAA
72857 AAAGTTTAAG
Statistics
Matches: 65, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
59 37 0.57
60 28 0.43
ACGTcount: A:0.40, C:0.04, G:0.23, T:0.33
Consensus pattern (60 bp):
TTTGAGGATGAAATTAGAATATTCAAAAGTTATGAGACTAATATAGAAAGAGAGTAATAG
Found at i:81773 original size:16 final size:17
Alignment explanation
Indices: 81747--81779 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
81737 TTTTTTTATG
*
81747 TTTTTACCCTTTGGGTA
1 TTTTTACCCTTTAGGTA
81764 TTTTTA-CCTTTAGGTA
1 TTTTTACCCTTTAGGTA
81780 ATTGGATTCC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.15, C:0.15, G:0.15, T:0.55
Consensus pattern (17 bp):
TTTTTACCCTTTAGGTA
Found at i:89233 original size:2 final size:2
Alignment explanation
Indices: 89226--89259 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
89216 GACGCTGTGA
89226 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
89260 TTGTAGTGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:90860 original size:30 final size:29
Alignment explanation
Indices: 90802--90861 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 29
90792 TCATTTTATA
* *
90802 ACTTATAATAGTGGAAAACTTAATAAAAC
1 ACTTATAATAGTGGAAAACTCAACAAAAC
*
90831 ACTTATAATAGTTGGGAAACTCAACAAAAC
1 ACTTATAATAG-TGGAAAACTCAACAAAAC
90861 A
1 A
90862 ACGTCCTATA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 11 0.41
30 16 0.59
ACGTcount: A:0.50, C:0.13, G:0.12, T:0.25
Consensus pattern (29 bp):
ACTTATAATAGTGGAAAACTCAACAAAAC
Found at i:94119 original size:9 final size:9
Alignment explanation
Indices: 94107--94137 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
94097 ACTAATATTA
*
94107 AAAATAAAT
1 AAAACAAAT
94116 AAAACAAAT
1 AAAACAAAT
94125 AAAACAAAT
1 AAAACAAAT
94134 AAAA
1 AAAA
94138 ATAAACAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.81, C:0.06, G:0.00, T:0.13
Consensus pattern (9 bp):
AAAACAAAT
Found at i:97381 original size:23 final size:23
Alignment explanation
Indices: 97355--97403 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
97345 ATAAAGAACC
*
97355 AAAATAAA-CTTAAATATACCATT
1 AAAATAAAGCTTAAACA-ACCATT
*
97378 AAAATAAAGTTTAAACAACCATT
1 AAAATAAAGCTTAAACAACCATT
97401 AAA
1 AAA
97404 TCAACTACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 17 0.74
24 6 0.26
ACGTcount: A:0.59, C:0.12, G:0.02, T:0.27
Consensus pattern (23 bp):
AAAATAAAGCTTAAACAACCATT
Found at i:98520 original size:37 final size:39
Alignment explanation
Indices: 98441--98521 Score: 107
Period size: 37 Copynumber: 2.1 Consensus size: 39
98431 TTACAAGTTG
*
98441 TAAAATATTTATATATTTTCTTTAAAAAAATTAAATTCA
1 TAAAATATTTATATATTTTCTTTAAAAAAATTAAAATCA
98480 TAAAAT-TTTATATAATTTT-TTT-AAAAAATTAAAAAT-A
1 TAAAATATTTATAT-ATTTTCTTTAAAAAAATT-AAAATCA
98517 TAAAA
1 TAAAA
98522 AATATTTAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
37 14 0.36
38 14 0.36
39 11 0.28
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (39 bp):
TAAAATATTTATATATTTTCTTTAAAAAAATTAAAATCA
Found at i:107731 original size:229 final size:227
Alignment explanation
Indices: 107238--107732 Score: 891
Period size: 229 Copynumber: 2.2 Consensus size: 227
107228 GTTTTATTGT
* * *
107238 AAAGTATTTATCCTTTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAATATATTTATTATT
1 AAAGTATATAT-CATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATT
*
107303 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAA
65 ATATTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAA
*
107368 ATAATTTTTTGTGTAAATAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
130 ATAATTTTTTATGTAAATAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
107433 AAAAAATGAAACATAAATTACATAACTTTAAAA
195 AAAAAATGAAACATAAATTACATAACTTTAAAA
* *
107466 AAAATATATATCATTTTTATAAAAGTGTCTATACTTATTTCACTGTGAAAAACATATTTATTATT
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTG-AAAACATATTTATTATT
107531 ATATTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAA
65 ATATTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAA
107596 ATAATTTTTTATGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTA
130 ATAATTTTTTATGTAAAT-AAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTA
*
107661 AAAAAATTGAAACATAAATTACATAACTTTAAAA
194 AAAAAAATGAAACATAAATTACATAACTTTAAAA
107695 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTAT
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTAT
107733 AAAAGTAGGT
Statistics
Matches: 255, Mismatches: 10, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
227 34 0.13
228 106 0.42
229 115 0.45
ACGTcount: A:0.45, C:0.08, G:0.07, T:0.40
Consensus pattern (227 bp):
AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTA
TATTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAA
TAATTTTTTATGTAAATAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAA
AAAAATGAAACATAAATTACATAACTTTAAAA
Found at i:108034 original size:20 final size:20
Alignment explanation
Indices: 108011--108049 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
108001 CGATATACCA
108011 GGTAA-AAATATGATAAAACC
1 GGTAACAAA-ATGATAAAACC
108031 GGTAACAAAATGATAAAAC
1 GGTAACAAAATGATAAAAC
108050 TAGTAAAACG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 15 0.83
21 3 0.17
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.18
Consensus pattern (20 bp):
GGTAACAAAATGATAAAACC
Found at i:108255 original size:170 final size:178
Alignment explanation
Indices: 107797--108260 Score: 602
Period size: 182 Copynumber: 2.6 Consensus size: 178
107787 TCGATCCAAA
* * * *
107797 TTAAAAATGTGTCGATCCAAAACGATATAACAGGTAAAACTATGACTAAACCGGTATAGAAATGA
1 TTAAAAAAGTATCGATCCAAAACGATATAACAGGTAAAAATATGA-TAAACCGGTAT-CAAATGA
* * * * * * *
107862 TAAAACCGGTAAAGCGCTACCGAATACATTTAAAGTGTCGTTACTTTAATATAAGGATCGACACT
64 TAAAACCAGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACT
*
107927 TCGTGAATTTAAAAGAGAAGCAGTTTTAAATCCTATAAAGTGTCGATACTT
129 TC-TGAATTTAAAAGAGAAGCAGTTTTAAAGCCTATAAAGTGTCGATACTT
** * *
107978 TTAAAAAATGTATCGATCCAGTACGATATACCAGGTAAAAATATGATAAAACCGGTAACAAAATG
1 TTAAAAAA-GTATCGATCCAAAACGATATAACAGGTAAAAATATGAT-AAACCGGTATC-AAATG
* * *
108043 ATAAAACTAGTAAAACGTTACCGGATATATTGAACGTGTCGATACTTT-ATATAAGGATCGACAC
63 ATAAAACCAGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACAC
**
108107 TT-TGAATTTAAAAGAGAAGCA-TTTTAGCGCCTAT-AA-TGTCGATAC-T
128 TTCTGAATTTAAAAGAGAAGCAGTTTTAAAGCCTATAAAGTGTCGATACTT
*
108153 TTAAAAAA-TATCGATCCACAACGATATAACAGGTAAAAATATGATAAA-CGGTATCAAATGATA
1 TTAAAAAAGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAACCGGTATCAAATGATA
* *
108216 AAACCAGTAAAATGATACCGGATATATTGAAAATGTCGATACTTT
66 AAACCAGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTT
108261 CGTAAGTACG
Statistics
Matches: 251, Mismatches: 29, Indels: 17
0.85 0.10 0.06
Matches are distributed among these distances:
170 48 0.19
171 6 0.02
172 3 0.01
173 34 0.14
175 9 0.04
176 9 0.04
177 2 0.01
178 10 0.04
179 19 0.08
181 26 0.10
182 85 0.34
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.27
Consensus pattern (178 bp):
TTAAAAAAGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAACCGGTATCAAATGATA
AAACCAGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACTTC
TGAATTTAAAAGAGAAGCAGTTTTAAAGCCTATAAAGTGTCGATACTT
Found at i:110437 original size:21 final size:21
Alignment explanation
Indices: 110411--110475 Score: 103
Period size: 21 Copynumber: 3.1 Consensus size: 21
110401 AAGACAATCA
*
110411 AGAGTCGAAGAGAAACTTGAT
1 AGAGTCGAAGAGAAACTTGAG
110432 AGAGTCGAAGAGAAACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
* *
110453 AGAGTCGAAGATACACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
110474 AG
1 AG
110476 CATAAGGGGG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.42, C:0.11, G:0.31, T:0.17
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:112349 original size:19 final size:19
Alignment explanation
Indices: 112325--112373 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
112315 AATGTAGGGT
112325 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
112344 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
112363 TAATTTTGTAT
1 TAATTTTGTAT
112374 GTGAATATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.33, C:0.02, G:0.10, T:0.55
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:113259 original size:390 final size:397
Alignment explanation
Indices: 112461--113810 Score: 2384
Period size: 390 Copynumber: 3.4 Consensus size: 397
112451 ATACACATTA
*
112461 AGGGTGCAACCATAAAGTGTCGAACCATATATAAAAAAGTGTCGATCCCAAAAACATCGAAAACC
1 AGGGTGCAACCATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAAACATCGAAAACC
112526 AAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGA
65 AAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGA
*
112591 ATATGTCTAAATAATGTGTCTACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
130 ATATGTCTAAATAA-GTGTCGACACTTTTTTAGTTTGTGTCGATA-TTTTGGTCCAGAATGAATG
112656 GAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGA
193 GAAAACAGGGTGCAACCATAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAAACATCGA
*
112721 AAACCAAAAGTATAATGTAATATGTAATTTATCAATCTAACCGGTACAAGTATACCGGTTTTATG
257 AAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATG
112786 AGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGT-TCGATATTTTTGGTCCAGAAT
322 AGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAAT
112850 GAATGGAAAAC
387 GAATGGAAAAC
*
112861 AGGGTGCAACCAT-AAGTGTCGATCCATATAT-AAAAGTGTCGATCACAAAAACATCGAAAACCA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
*
112924 AAAGTATAATGT-A-ATGTAA-TTTTCAATCTAACCGGTACAAGTATA-CGGTTTTATGAGAAAA
66 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
112985 TATGTCTAAATAA-TGTCGACAC-TTTTTAGTTTGTGTCGATAGTTTTGGTCCAGAATGAATGGA
131 TATGTCTAAATAAGTGTCGACACTTTTTTAGTTTGTGTCGATA-TTTTGGTCCAGAATGAATGGA
113048 AAACAGGGTGCAACCATAAAGTGTCGATCCATATATACAAAGTGTCGATCCCAAAAACATCGAAA
195 AAACAGGGTGCAACCATAAAGTGTCGATCCATATATA-AAAGTGTCGATCCCAAAAACATCGAAA
*
113113 ACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAAACGGTACAAGTATACCGGTTTTATGAG
259 ACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAG
* *
113178 AGAATATGTCTAAATAATGTGTCAACACTTTTTTAGTTTGTGTTGATATTTTTGGTCCAGAATGA
324 AGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGA
113243 ATGGAAAAC
389 ATGGAAAAC
113252 A-GGTGCAACCATAAAGTGTCGAT-C--ATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
113313 AAAGTATAATGT-ATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
66 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
113377 TATGTCTAAATAATGTGTCGACAC-TTTTTAGTTTGTGTCGATATTTTGGTCCAGAATGAATGG-
131 TATGTCTAAATAA-GTGTCGACACTTTTTTAGTTTGTGTCGATATTTTGGTCCAGAATGAATGGA
*
113440 AAACAGGG-GCAACCAT-AAGTGTCGATCCATATA-AAAAGTGTCGATCCCAAAAACATTGAAAA
195 AAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAGTGTCGATCCCAAAAACATCGAAAA
113502 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
260 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
*
113567 GAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATAGTTTTGGTCCAGAATGAA
325 GAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAA
113632 TGGAAAAC
390 TGGAAAAC
113640 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCC-AAAACATCGAAAACC-
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
113703 AAAGTAT-ATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
66 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
113767 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATA
131 TATGTCTAAATAA-GTGTCGACACTTTTTTAGTTTGTGTCGATA
113811 CTAATTTAAA
Statistics
Matches: 919, Mismatches: 16, Indels: 39
0.94 0.02 0.04
Matches are distributed among these distances:
388 166 0.18
389 72 0.08
390 325 0.35
391 118 0.13
392 56 0.06
393 48 0.05
394 54 0.06
395 6 0.01
396 1 0.00
397 43 0.05
399 17 0.02
400 13 0.01
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (397 bp):
AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
TATGTCTAAATAAGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTGGTCCAGAATGAATGGAA
AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAGTGTCGATCCCAAAAACATCGAAAAC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAAT
GGAAAAC
Found at i:113743 original size:585 final size:589
Alignment explanation
Indices: 112461--113810 Score: 2436
Period size: 585 Copynumber: 2.3 Consensus size: 589
112451 ATACACATTA
*
112461 AGGGTGCAACCATAAAGTGTCGAACCATATATAAAAAAGTGTCGATCCCAAAAACATCGAAAACC
1 AGGGTGCAACCATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAAACATCGAAAACC
112526 AAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGA
65 AAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGA
*
112591 ATATGTCTAAATAATGTGTCTACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
130 ATATGTCTAAATAATGTGTCAACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
112656 GAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGA
195 GAAAACAGGGTGCAACCATAAAGTGTCGATCCA-ATATAAAAAGTGTCGATCCCAAAAACATCGA
112721 AAACCAAAAGTATAATGTAATATGTAATTTATCAATCTAACCGGTACAAGTATACCGGTTTTATG
259 AAACCAAAAGTATAATGTAATATGTAATTTATCAATCTAACCGGTACAAGTATACCGGTTTTATG
112786 AGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTTCGATATTTTTGGTCCAGAATG
324 AGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTTCGATATTTTTGGTCCAGAATG
112851 AATGGAAAACAGGGTGCAACCATAAGTGTCGATCCATATATAAAAGTGTCGATCACAAAAACATC
389 AATGGAAAACAGGGTGCAACCATAAGTGTCGATCCATATATAAAAGTGTCGATCACAAAAACATC
112916 GAAAACCAAAAGTATAATGTAATGTAATTTTCAATCTAACCGGTACAAGTATACGGTTTTATGAG
454 GAAAACCAAAAGTATAATGTAATGTAATTTTCAATCTAACCGGTACAAGTATACGGTTTTATGAG
112981 AAAATATGTCTAAATAATGTCGACACTTTTTAGTTTGTGTCGATAGTTTTGGTCCAGAATGAATG
519 AAAATATGTCTAAATAATGTCGACACTTTTTAGTTTGTGTCGATAGTTTTGGTCCAGAATGAATG
113046 GAAAAC
584 GAAAAC
*
113052 AGGGTGCAACCATAAAGTGTCGATCCATATATACAAAGTGTCGATCCCAAAAACATCGAAAACCA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
*
113117 AAAGTATAATGTAATATGTAATTTTTCAATCTAAACGGTACAAGTATACCGGTTTTATGAGAGAA
66 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
*
113182 TATGTCTAAATAATGTGTCAACACTTTTTTAGTTTGTGTTGATATTTTTGGTCCAGAATGAATGG
131 TATGTCTAAATAATGTGTCAACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
113247 AAAACA-GGTGCAACCATAAAGTGTCGAT-C-ATATAAAAAGTGTCGATCCCAAAAACATCGAAA
196 AAAACAGGGTGCAACCATAAAGTGTCGATCCAATATAAAAAGTGTCGATCCCAAAAACATCGAAA
*
113309 ACCAAAAGTATAATGT-ATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAG
261 ACCAAAAGTATAATGTAATATGTAATTTATCAATCTAACCGGTACAAGTATACCGGTTTTATGAG
113373 AGAATATGTCTAAATAATGTGTCGACAC-TTTTTAGTTTGTGTCGATA-TTTTGGTCCAGAATGA
326 AGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGT-TCGATATTTTTGGTCCAGAATGA
* *
113436 ATGG-AAACAGGG-GCAACCATAAGTGTCGATCCATATA-AAAAGTGTCGATCCCAAAAACATTG
390 ATGGAAAACAGGGTGCAACCATAAGTGTCGATCCATATATAAAAGTGTCGATCACAAAAACATCG
113498 AAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTAT
455 AAAACCAAAAGTATAATGT-A-ATGTAA-TTTTCAATCTAACCGGTACAAGTATA-CGGTTTTAT
*
113563 GAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATAGTTTTGGTCCAGAA
516 GAGAAAATATGTCTAAATAA--TGTCGACAC-TTTTTAGTTTGTGTCGATAGTTTTGGTCCAGAA
113628 TGAATGGAAAAC
578 TGAATGGAAAAC
113640 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCC-AAAACATCGAAAACC-
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
113703 AAAGTAT-ATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
66 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
*
113767 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATA
131 TATGTCTAAATAATGTGTCAACACTTTTTTAGTTTGTGTCGATA
113811 CTAATTTAAA
Statistics
Matches: 738, Mismatches: 13, Indels: 22
0.95 0.02 0.03
Matches are distributed among these distances:
581 42 0.06
582 26 0.04
583 14 0.02
584 58 0.08
585 207 0.28
586 56 0.08
587 24 0.03
588 93 0.13
589 22 0.03
590 165 0.22
591 31 0.04
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (589 bp):
AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
TATGTCTAAATAATGTGTCAACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
AAAACAGGGTGCAACCATAAAGTGTCGATCCAATATAAAAAGTGTCGATCCCAAAAACATCGAAA
ACCAAAAGTATAATGTAATATGTAATTTATCAATCTAACCGGTACAAGTATACCGGTTTTATGAG
AGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTTCGATATTTTTGGTCCAGAATGAA
TGGAAAACAGGGTGCAACCATAAGTGTCGATCCATATATAAAAGTGTCGATCACAAAAACATCGA
AAACCAAAAGTATAATGTAATGTAATTTTCAATCTAACCGGTACAAGTATACGGTTTTATGAGAA
AATATGTCTAAATAATGTCGACACTTTTTAGTTTGTGTCGATAGTTTTGGTCCAGAATGAATGGA
AAAC
Found at i:115260 original size:6 final size:6
Alignment explanation
Indices: 115249--115358 Score: 76
Period size: 6 Copynumber: 17.7 Consensus size: 6
115239 CAAGCGGTCA
* * * * *
115249 ATGAAG ATGAAG CTGACG ATGAAG ATGACG ATGATG ATGACG ATGAAG
1 ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG
* * * * * *
115297 CTGACG ATGAAG ATGATGACG ATGATG ATGATG ATGAATG ATGATG ATGATG
1 ATGAAG ATGAAG ATGA--A-G ATGAAG ATGAAG ATGAA-G ATGAAG ATGAAG
*
115349 ATGATG ATGA
1 ATGAAG ATGA
115359 TGCAAACAAG
Statistics
Matches: 85, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
6 74 0.87
7 5 0.06
8 1 0.01
9 5 0.06
ACGTcount: A:0.37, C:0.06, G:0.33, T:0.24
Consensus pattern (6 bp):
ATGAAG
Found at i:115271 original size:12 final size:12
Alignment explanation
Indices: 115249--115358 Score: 103
Period size: 12 Copynumber: 8.8 Consensus size: 12
115239 CAAGCGGTCA
*
115249 ATGAAGATGAAG
1 ATGACGATGAAG
*
115261 CTGACGATGAAG
1 ATGACGATGAAG
*
115273 ATGACGATGATG
1 ATGACGATGAAG
115285 ATGACGATGAAG
1 ATGACGATGAAG
*
115297 CTGACGATGAAGATG
1 ATGACGATG-A-A-G
*
115312 ATGACGATGATG
1 ATGACGATGAAG
*
115324 ATGATGATGAATG
1 ATGACGATGAA-G
* *
115337 ATGATGATGATG
1 ATGACGATGAAG
*
115349 ATGATGATGA
1 ATGACGATGA
115359 TGCAAACAAG
Statistics
Matches: 83, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
12 60 0.72
13 12 0.14
14 2 0.02
15 9 0.11
ACGTcount: A:0.37, C:0.06, G:0.33, T:0.24
Consensus pattern (12 bp):
ATGACGATGAAG
Found at i:115286 original size:3 final size:3
Alignment explanation
Indices: 115266--115360 Score: 109
Period size: 3 Copynumber: 31.3 Consensus size: 3
115256 TGAAGCTGAC
* * * * * * *
115266 GAT GAA GAT GAC GAT GAT GAT GAC GAT GAA GCT GAC GAT GAA GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
*
115314 GAC GAT GAT GAT GAT GAT GAAT GAT GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT G-AT GAT GAT GAT GAT GAT GAT GAT GAT
115360 G
1 G
115361 CAAACAAGTA
Statistics
Matches: 75, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
3 72 0.96
4 3 0.04
ACGTcount: A:0.36, C:0.05, G:0.34, T:0.25
Consensus pattern (3 bp):
GAT
Done.