Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003025.1 Hibiscus syriacus cultivar Beakdansim tig00006295_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85215
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
Found at i:352 original size:84 final size:84
Alignment explanation
Indices: 93--1321 Score: 1193
Period size: 84 Copynumber: 14.8 Consensus size: 84
83 GATAGATAGC
* * * * * * * *
93 CCCTTCTTGCCTTGAGTTATGCTGTAAATTTGATTTGCCTTTGAGCTGAGTGTAATCGAACTCGA
1 CCCTTCTCGACTTAAGTTATGCTGCAAA--TGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGA
* *
158 AGGTCTTTTTGG-TGACAGATAA
64 AGGTC--CTTGGTTGGCAGATAA
* * * * * * * * * * *
180 CCCTTCTAGCCTTGAGTTATGTTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTTGAG
1 CCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCGAA
* *
245 GGT-C-T--TTGGTAAATAA
65 GGTCCTTGGTTGGCAGATAA
* * * *
261 CCCTTCTCGACTTAAGCTATGCTGCAAATGATGCGCCTTGAAGTTGAGCGTAGTCGAACTCGAAG
1 CCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAG
* *
326 GTCCTTGGTTGACAAATAA
66 GTCCTTGGTTGGCAGATAA
* * * *
345 CCATTCTCGACTTAAGTTATGCTGTAAATGATATG-CTTGGGAGCTTAGCGTAGTCGAACTCGAA
1 CCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTT-GGAGCTGAGCGTAGTCGAACTCGAA
* *
409 GGTCTTTTGGTT-ACAGATAA
65 GGTC-CTTGGTTGGCAGATAA
* * * ** * * * * * *
429 CCCTTCTAG-CTTGATTTATGCTATAAATGATGCGCCCTCGAAGCTGAGTGTAATCAAACTCG-A
1 CCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCGAA
*
492 GGAT-C-T--TTGGCAGATAG
65 GG-TCCTTGGTTGGCAGATAA
509 CCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCC-TGGAGCTGAGCGTAGTCGAACTCGAAG
1 CCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAG
* *
573 GT-CTTAG-TGGTAGATAA
66 GTCCTTGGTTGGCAGATAA
* * * * * * *
590 CCCTTCTAGCCTTGAGTTATGCTGCAAATGATATGCCTTAGAGTTGAGCGTAGTCGAACGCGAAG
1 CCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAG
* *
655 GTCTTTTGGTT-ACAGATAA
66 GTC-CTTGGTTGGCAGATAA
* * * * * * * * ** *
674 CCCTTATAGCCTTGAGTTATGTTGTAAATAATGTGCCTTCGAAGCTGATTGTAATCGAACTC-AA
1 CCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTT-GGAGCTGAGCGTAGTCGAACTCGAA
* *
738 GGGGT-C-T--TTAGCAG-TAG
65 --GGTCCTTGGTTGGCAGATAA
* * *
755 CCCTTCTCGACTTAAGCTACGCTACAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAG
1 CCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAG
* *
820 GTCTTTGGTTGGAAGATAA
66 GTCCTTGGTTGGCAGATAA
* * * *
839 CCCTTCTCGACTTAACTTATGCTACAAATGATATGCCTTGGAGCTGAGCGTAGTCGATCTCGAAG
1 CCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAG
* *
904 GT-CTTTGTTGGCAGATAG
66 GTCCTTGGTTGGCAGATAA
* * *
922 CCATTCTCGACTTAAGATATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTC-AACTC-AAA
1 CCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAG
* *
985 GTCTTTGGTTGGCAGATAG
66 GTCCTTGGTTGGCAGATAA
* * * *
1004 CCCTTCTCGACTTAAGTTATGATGCAAAAGATGTGCCTTGGAGCTTAGTGTAGTCGAACTCGAAG
1 CCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAG
*
1069 GT-CTTTGTTGGCAGATAA
66 GTCCTTGGTTGGCAGATAA
* * * * * *
1087 CCCTTCTTGACTTAAGTTATGCTACAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGAA
1 CCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCGAA
*
1152 GGTCTTTGGTTGGCAGATAA
65 GGTCCTTGGTTGGCAGATAA
* *
1172 CCCTTATCGACTTAAGATATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGT-GAACTCGAAG
1 CCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAG
*
1236 GTCTTTGGTTGGCAGATAA
66 GTCCTTGGTTGGCAGATAA
* *
1255 CCCTTCTCGACTTAAGTTATGCTGTAAATGATGTGCCTTGGAGCTGAGCGTAGTCAAAC-CGAAG
1 CCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAG
1319 GTC
66 GTC
1322 TTTTGTTGTA
Statistics
Matches: 945, Mismatches: 160, Indels: 78
0.80 0.14 0.07
Matches are distributed among these distances:
79 26 0.03
80 64 0.07
81 138 0.15
82 98 0.10
83 231 0.24
84 257 0.27
85 75 0.08
86 30 0.03
87 26 0.03
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (84 bp):
CCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAG
GTCCTTGGTTGGCAGATAA
Found at i:374 original size:165 final size:164
Alignment explanation
Indices: 93--1329 Score: 1225
Period size: 165 Copynumber: 7.5 Consensus size: 164
83 GATAGATAGC
* * * * * * *
93 CCCTTCTTGCCTTGAGTTATGCTGTAAATTTGATTTGCCTTTG-AGCTGAGTGTAATCGAACTCG
1 CCCTTCTCGACTTAAGTTATGCTGCAAA--TGATGTGCC-TTGAAGCTGAGCGTAGTCGAACTCG
* * * * * *
157 AAGGTCTTTTTGG-TGACAGATAACCCTTCTAGCCTTGAGTTATGTTGTAAATGATGTGCCCTCG
63 AAGGTC--TTTGGTTGACAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG-CCTTG
* * * * * *
221 AAGCTGAGTGTAATCGAACTTGAGGGTCTTTGGTAAATAA
125 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTAGATAA
* * *
261 CCCTTCTCGACTTAAGCTATGCTGCAAATGATGCGCCTTGAAGTTGAGCGTAGTCGAACTCGAAG
1 CCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGAAGCTGAGCGTAGTCGAACTCGAAG
* * * * *
326 GTCCTTGGTTGACAAATAACCATTCTCGACTTAAGTTATGCTGTAAATGATATG-CTTGGGAGCT
66 GTCTTTGGTTGACAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTT-GGAGCT
*
390 TAGCGTAGTCGAACTCGAAGGTCTTTTGGTTACAGATAA
130 GAGCGTAGTCGAACTCGAAGGTC-TTTGG-T--AGATAA
* * * ** * * * * *
429 CCCTTCTAG-CTTGATTTATGCTATAAATGATGCGCCCTCGAAGCTGAGTGTAATCAAACTCG-A
1 CCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG-CCTTGAAGCTGAGCGTAGTCGAACTCGAA
*
492 GGATCTTT-G--G-CAGATAGCCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCC-TGGAGC
65 GG-TCTTTGGTTGACAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGC
552 TGAGCGTAGTCGAACTCGAAGGTCTTAGTGGTAGATAA
129 TGAGCGTAGTCGAACTCGAAGGTCTT--TGGTAGATAA
* * * * * *
590 CCCTTCTAGCCTTGAGTTATGCTGCAAATGATATGCCTT-AGAGTTGAGCGTAGTCGAACGCGAA
1 CCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGA-AGCTGAGCGTAGTCGAACTCGAA
* * * * * * * *
654 GGTCTTTTGGTT-ACAGATAACCCTTATAGCCTTGAGTTATGTTGTAAATAATGTGCCTTCGAAG
65 GGTC-TTTGGTTGACAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTT-GGAG
** * * * *
718 CTGATTGTAATCGAACTC-AAGGGGTCTTTAGCAG-TAG
128 CTGAGCGTAGTCGAACTCGAA--GGTCTTTGGTAGATAA
* * * *
755 CCCTTCTCGACTTAAGCTACGCTACAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAG
1 CCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGAAGCTGAGCGTAGTCGAACTCGAAG
* * *
820 GTCTTTGGTTGGA-AGATAACCCTTCTCGACTTAACTTATGCTACAAATGATATGCCTTGGAGCT
66 GTCTTTGGTT-GACAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCT
* * *
884 GAGCGTAGTCGATCTCGAAGGTCTTTGTTGGCAGATAG
130 GAGCGTAGTCGAACTCGAAGGTC--T-TTGGTAGATAA
* * * *
922 CCATTCTCGACTTAAGATATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTC-AACTC-AAA
1 CCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGAAGCTGAGCGTAGTCGAACTCGAAG
* * * * *
985 GTCTTTGGTTGGCAGATAGCCCTTCTCGACTTAAGTTATGATGCAAAAGATGTGCCTTGGAGCTT
66 GTCTTTGGTTGACAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTG
* *
1050 AGTGTAGTCGAACTCGAAGGTCTTTGTTGGCAGATAA
131 AGCGTAGTCGAACTCGAAGGTC--T-TTGGTAGATAA
* * * * *
1087 CCCTTCTTGACTTAAGTTATGCTACAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGAA
1 CCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG-CCTTGAAGCTGAGCGTAGTCGAACTCGAA
* * *
1152 GGTCTTTGGTTGGCAGATAACCCTTATCGACTTAAGATATGCTGCAAATGATGTGCCTTGGAGCT
65 GGTCTTTGGTTGACAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCT
1217 GAGCGTAGT-GAACTCGAAGGTCTTTGGTTGGCAGATAA
130 GAGCGTAGTCGAACTCGAAGGTCTTTGG-T---AGATAA
* * *
1255 CCCTTCTCGACTTAAGTTATGCTGTAAATGATGTGCCTTGGAGCTGAGCGTAGTCAAAC-CGAAG
1 CCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGAAGCTGAGCGTAGTCGAACTCGAAG
*
1319 GTCTTTTGTTG
66 GTCTTTGGTTG
1330 TAAAATATCC
Statistics
Matches: 891, Mismatches: 138, Indels: 82
0.80 0.12 0.07
Matches are distributed among these distances:
160 1 0.00
161 36 0.04
162 28 0.03
163 36 0.04
164 97 0.11
165 304 0.34
166 82 0.09
167 133 0.15
168 174 0.20
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (164 bp):
CCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGAAGCTGAGCGTAGTCGAACTCGAAG
GTCTTTGGTTGACAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTG
AGCGTAGTCGAACTCGAAGGTCTTTGGTAGATAA
Found at i:5129 original size:16 final size:15
Alignment explanation
Indices: 5108--5140 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
5098 ATAAATAAAT
5108 ATAAAATAATAGAATA
1 ATAAAATAAT-GAATA
5124 ATAAAATAATGAATA
1 ATAAAATAATGAATA
5139 AT
1 AT
5141 GAATAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (15 bp):
ATAAAATAATGAATA
Found at i:5260 original size:20 final size:19
Alignment explanation
Indices: 5216--5272 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 19
5206 TAAATAAATA
*
5216 AATAAATAAGTAAAAATAATG
1 AATAAA-AA-TAAAAATAAAG
5237 -ATAAAAATAAAAATAACAG
1 AATAAAAATAAAAATAA-AG
5256 AATAAAAATATAAAATA
1 AATAAAAATA-AAAATA
5273 TAAAAATGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
18 9 0.28
19 3 0.09
20 14 0.44
21 6 0.19
ACGTcount: A:0.72, C:0.02, G:0.05, T:0.21
Consensus pattern (19 bp):
AATAAAAATAAAAATAAAG
Found at i:5272 original size:13 final size:13
Alignment explanation
Indices: 5240--5302 Score: 51
Period size: 13 Copynumber: 4.8 Consensus size: 13
5230 AATAATGATA
5240 AAAATAAAAATA-
1 AAAATAAAAATAT
5252 ACAGAATAAAAATAT
1 A-A-AATAAAAATAT
5267 AAAATATAAAA-AT
1 AAAATA-AAAATAT
* *
5280 GAAATAGAAAGT-T
1 AAAATA-AAAATAT
5293 AAAATAAAAA
1 AAAATAAAAA
5303 AGGTAACTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
12 4 0.10
13 21 0.51
14 15 0.37
15 1 0.02
ACGTcount: A:0.73, C:0.02, G:0.06, T:0.19
Consensus pattern (13 bp):
AAAATAAAAATAT
Found at i:5302 original size:6 final size:6
Alignment explanation
Indices: 5215--5277 Score: 54
Period size: 6 Copynumber: 9.5 Consensus size: 6
5205 TTAAATAAAT
**
5215 AAATAA ATAAGTAA AAATAA TGATAA AAATAA AAATAA CAGAATAA AAATATA
1 AAATAA A-AA-TAA AAATAA AAATAA AAATAA AAATAA -A-AATAA AAATA-A
5268 AAATATA AAA
1 AAATA-A AAA
5278 ATGAAATAGA
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
6 22 0.46
7 17 0.35
8 9 0.19
ACGTcount: A:0.73, C:0.02, G:0.05, T:0.21
Consensus pattern (6 bp):
AAATAA
Found at i:6709 original size:33 final size:34
Alignment explanation
Indices: 6672--6738 Score: 127
Period size: 33 Copynumber: 2.0 Consensus size: 34
6662 AATAACAATA
6672 AAATAAATAAATAAATAAATAAATAAAAA-AAAT
1 AAATAAATAAATAAATAAATAAATAAAAATAAAT
6705 AAATAAATAAATAAATAAATAAATAAAAATAAAT
1 AAATAAATAAATAAATAAATAAATAAAAATAAAT
6739 GACAATAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 29 0.88
34 4 0.12
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (34 bp):
AAATAAATAAATAAATAAATAAATAAAAATAAAT
Found at i:6738 original size:4 final size:4
Alignment explanation
Indices: 6672--6731 Score: 102
Period size: 4 Copynumber: 14.8 Consensus size: 4
6662 AATAACAATA
*
6672 AAAT AAAT AAAT AAAT AAAT AAAT AAAAA AAAT AAAT AAAT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT -AAAT AAAT AAAT AAAT AAAT AAAT
6721 AAAT AAAT AAA
1 AAAT AAAT AAA
6732 AATAAATGAC
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
4 50 0.94
5 3 0.06
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:6754 original size:29 final size:30
Alignment explanation
Indices: 6673--6738 Score: 116
Period size: 29 Copynumber: 2.2 Consensus size: 30
6663 ATAACAATAA
6673 AATAAATAAATAAATAAATAAAT-AAAAAA
1 AATAAATAAATAAATAAATAAATAAAAAAA
*
6702 AATAAATAAATAAATAAATAAATAAATAAA
1 AATAAATAAATAAATAAATAAATAAAAAAA
6732 AATAAAT
1 AATAAAT
6739 GACAATAATA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
29 23 0.66
30 12 0.34
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (30 bp):
AATAAATAAATAAATAAATAAATAAAAAAA
Found at i:6809 original size:15 final size:14
Alignment explanation
Indices: 6772--6809 Score: 58
Period size: 14 Copynumber: 2.6 Consensus size: 14
6762 AAACCTATAT
6772 AATATATATTTTAA
1 AATATATATTTTAA
*
6786 AAAATATATTTTAA
1 AATATATATTTTAA
6800 AATTATATAT
1 AA-TATATAT
6810 ATATTTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 15 0.71
15 6 0.29
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
AATATATATTTTAA
Found at i:6855 original size:28 final size:26
Alignment explanation
Indices: 6807--6866 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 26
6797 TAAAATTATA
* * * *
6807 TATATATTTTTTAAAAATTTTCAAAT
1 TATATAGTTTTCAAAAATTTTAAAAC
6833 TATATAGTTTTCAAAAATGTTTTAAAAC
1 TATATAGTTTTCAAAAA--TTTTAAAAC
6861 TATATA
1 TATATA
6867 TTATAAGTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 15 0.54
28 13 0.46
ACGTcount: A:0.43, C:0.05, G:0.03, T:0.48
Consensus pattern (26 bp):
TATATAGTTTTCAAAAATTTTAAAAC
Found at i:6879 original size:34 final size:34
Alignment explanation
Indices: 6831--7115 Score: 241
Period size: 36 Copynumber: 8.2 Consensus size: 34
6821 AAATTTTCAA
6831 ATTATATAGTTTTCAAAAATGTTTTAAAACTATAT
1 ATTATATAGTTTTC-AAAATGTTTTAAAACTATAT
* *
6866 ATTATA-AGTTTTCAAAATGATTTCAAAATTATAT
1 ATTATATAGTTTTCAAAATG-TTTTAAAACTATAT
* *
6900 -TGTATATATGTTTTTAAAATGTTTT-TAA--A-A-
1 AT-TATATA-GTTTTCAAAATGTTTTAAAACTATAT
* *
6930 ATTATATA-TTTTCAAAATGATTAAAAACTATAT
1 ATTATATAGTTTTCAAAATGTTTTAAAACTATAT
*
6963 AATATATA-TTTTCAAAATGTTTTAAAAACTATAT
1 ATTATATAGTTTTCAAAATGTTTT-AAAACTATAT
*
6997 ATTATATTTA-TTTTCAAAATGTTTTAAAAACTATACA
1 ATTATA--TAGTTTTCAAAATGTTTT-AAAACTATA-T
* *
7034 ATATATAAATGTTTTCAAACATGGTTTCAAAACTATAT
1 AT-TATATA-GTTTTCAAA-AT-GTTTTAAAACTATAT
* *
7072 -TTATATATGTTTTAAAAATGTTTTTAAACTATAAT
1 ATTATATA-GTTTTCAAAATGTTTTAAAACTAT-AT
7107 ATATATATA
1 AT-TATATA
7116 TATATATATA
Statistics
Matches: 207, Mismatches: 21, Indels: 42
0.77 0.08 0.16
Matches are distributed among these distances:
28 12 0.06
29 2 0.01
30 6 0.03
31 3 0.01
32 2 0.01
33 27 0.13
34 51 0.25
35 14 0.07
36 54 0.26
37 9 0.04
38 12 0.06
39 11 0.05
40 4 0.02
ACGTcount: A:0.44, C:0.06, G:0.05, T:0.46
Consensus pattern (34 bp):
ATTATATAGTTTTCAAAATGTTTTAAAACTATAT
Found at i:6907 original size:97 final size:97
Alignment explanation
Indices: 6760--7031 Score: 253
Period size: 97 Copynumber: 2.8 Consensus size: 97
6750 AAATATTTCC
* **
6760 AAAAACCTATATAATATATATTTTAAAAAAT-ATATTTTAAA--AT-TA-TATATATATTTTTTA
1 AAAAA-CTATATAATATATATTTT-CAAAATGAT-TTAAAAACTATATATTATATATATTTTTTA
* *
6820 AAA-ATTTT-CAAATTATATAGTTTTCAAAAATGTTT
63 AAAGATTTTAAAAATTATATA-TTTTC-AAAATGATT
* * * *
6855 TAAAACTATATATTATA-AGTTTTCAAAATGATTTCAAAA-T-TATATTGTATATATGTTTTTAA
1 AAAAACTATATAATATATA-TTTTCAAAATGATTTAAAAACTATATATTATATATAT-TTTTTAA
*
6917 AATGTTTTTAAAAATTATATATTTTCAAAATGATT
64 AA-GATTTTAAAAATTATATATTTTCAAAATGATT
* * *
6952 AAAAACTATATAATATATATTTTCAAAATGTTTTAAAAACTATATATTATATTTA-TTTTCAAAA
1 AAAAACTATATAATATATATTTTCAAAATGATTTAAAAACTATATATTATATATATTTTTTAAAA
*
7016 TG-TTTTAAAAACTATA
66 -GATTTTAAAAATTATA
7032 CAATATATAA
Statistics
Matches: 148, Mismatches: 17, Indels: 23
0.79 0.09 0.12
Matches are distributed among these distances:
93 12 0.08
94 19 0.13
95 12 0.08
96 22 0.15
97 51 0.34
98 11 0.07
99 21 0.14
ACGTcount: A:0.46, C:0.05, G:0.04, T:0.46
Consensus pattern (97 bp):
AAAAACTATATAATATATATTTTCAAAATGATTTAAAAACTATATATTATATATATTTTTTAAAA
GATTTTAAAAATTATATATTTTCAAAATGATT
Found at i:7115 original size:75 final size:75
Alignment explanation
Indices: 6932--7120 Score: 198
Period size: 74 Copynumber: 2.6 Consensus size: 75
6922 TTTTAAAAAT
* * *
6932 TATATATTTTCAAAATG-ATTAAAAAC--TATATA-ATAT--ATATTTTCAAAATGTTTTAAAAA
1 TATATATTTTAAAAATGTTTTAAAAACTATATATATATATAAATATTTTCAAAATGGTTTAAAAA
6991 CTATATATTA
66 CTATATATTA
* * * * *
7001 TATTTATTTTCAAAATGTTTTAAAAACTATACA-ATATATAAATGTTTTCAAACATGGTTTCAAA
1 TATATATTTTAAAAATGTTTTAAAAACTATATATATATATAAATATTTTCAAA-ATGGTTTAAAA
7065 ACTATAT-TTA
65 ACTATATATTA
* * *
7075 TATATGTTTTAAAAATGTTTT-TAAACTATAATATATATATATATAT
1 TATATATTTTAAAAATGTTTTAAAAACTAT-ATATATATATAAATAT
7121 ATATAAATGG
Statistics
Matches: 98, Mismatches: 13, Indels: 12
0.80 0.11 0.10
Matches are distributed among these distances:
69 16 0.16
70 8 0.08
71 1 0.01
72 7 0.07
73 7 0.07
74 33 0.34
75 26 0.27
ACGTcount: A:0.44, C:0.06, G:0.04, T:0.45
Consensus pattern (75 bp):
TATATATTTTAAAAATGTTTTAAAAACTATATATATATATAAATATTTTCAAAATGGTTTAAAAA
CTATATATTA
Found at i:13412 original size:30 final size:30
Alignment explanation
Indices: 13376--13441 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
13366 AGAGAACTGA
* *
13376 CGGTTCACACTGATTTTGCCGATTTTCAGC
1 CGGTTCACACTGATTTTGCCGATTCTCAAC
* * *
13406 CGGTTCACTCTGGTTTTGCCGGTTCTCAAC
1 CGGTTCACACTGATTTTGCCGATTCTCAAC
13436 CGGTTC
1 CGGTTC
13442 TTCATCGGTT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.12, C:0.29, G:0.23, T:0.36
Consensus pattern (30 bp):
CGGTTCACACTGATTTTGCCGATTCTCAAC
Found at i:20535 original size:23 final size:23
Alignment explanation
Indices: 20505--20561 Score: 107
Period size: 23 Copynumber: 2.5 Consensus size: 23
20495 CAAACACCCA
20505 AACCAACTCAAATCAGCTTAGAT
1 AACCAACTCAAATCAGCTTAGAT
20528 AACCAACTCAAATCAGCTTAGAT
1 AACCAACTCAAATCAGCTTAGAT
20551 AACCAAC-CAAA
1 AACCAACTCAAA
20562 CATTAATGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 4 0.12
23 30 0.88
ACGTcount: A:0.47, C:0.28, G:0.07, T:0.18
Consensus pattern (23 bp):
AACCAACTCAAATCAGCTTAGAT
Found at i:24156 original size:65 final size:65
Alignment explanation
Indices: 24004--24157 Score: 199
Period size: 65 Copynumber: 2.4 Consensus size: 65
23994 ATACACACCC
* *
24004 AACATCGAATG-CATTATGTGTACCAATGCACAAACAATGCATCGATACACTCTATGTTTTATTG
1 AACATCGAATGTAATTA-GTGTACCAATGCACAAACAATACATCGATACACTCTATGTTTTATTG
24068 A
65 A
* * *
24069 AACATCGAATGTACTTTA-TGTACCAATGCACAGACAATACATCGATAGACTCCTA-GCTTTT-T
1 AACATCGAATGTA-ATTAGTGTACCAATGCACAAACAATACATCGATACACT-CTATG-TTTTAT
24131 TGA
63 TGA
24134 AACATCGAATGTAATTAGTGTACC
1 AACATCGAATGTAATTAGTGTACC
24158 GATACACCCC
Statistics
Matches: 78, Mismatches: 6, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
64 3 0.04
65 65 0.83
66 7 0.09
67 3 0.04
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.31
Consensus pattern (65 bp):
AACATCGAATGTAATTAGTGTACCAATGCACAAACAATACATCGATACACTCTATGTTTTATTGA
Found at i:30007 original size:21 final size:20
Alignment explanation
Indices: 29962--30059 Score: 69
Period size: 21 Copynumber: 4.7 Consensus size: 20
29952 TTGATACCTA
*
29962 TGTATCGATACACTCTCGCTA-
1 TGTATCGATACACT-T-GATAG
29983 TGTATCGATACACTATGATAG
1 TGTATCGATACACT-TGATAG
30004 TGTATCGATGTATTC-CTTGA-ATG
1 TGTATCGA--TA--CACTTGATA-G
30027 TGTATCGATACACTTTG-TAG
1 TGTATCGATACAC-TTGATAG
*
30047 TGTACCGATACAC
1 TGTATCGATACAC
30060 CCGTCGAGTT
Statistics
Matches: 65, Mismatches: 3, Indels: 19
0.75 0.03 0.22
Matches are distributed among these distances:
19 1 0.02
20 17 0.26
21 29 0.45
22 1 0.02
23 14 0.22
24 2 0.03
25 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (20 bp):
TGTATCGATACACTTGATAG
Found at i:30566 original size:12 final size:13
Alignment explanation
Indices: 30537--30569 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
30527 GTATTATAAT
*
30537 TTTTCAAACATTG
1 TTTTCAAACATAG
30550 TTTTCAAA-ATAG
1 TTTTCAAACATAG
30562 TTTTCAAA
1 TTTTCAAA
30570 GTTTGCTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.36, C:0.12, G:0.06, T:0.45
Consensus pattern (13 bp):
TTTTCAAACATAG
Found at i:32771 original size:65 final size:65
Alignment explanation
Indices: 32659--32781 Score: 167
Period size: 65 Copynumber: 1.9 Consensus size: 65
32649 ATGCATTATG
* * * *
32659 TGTACTGATGCACAGATAATGCATCGATCCACTCCAGGTTTTATTGAAACATCAAATGCACTTTA
1 TGTACTGATGCACAGACAATGCATCGATACACTACAGGTCTTATTGAAACATCAAATGCACTTTA
* * *
32724 TGTACTGATGCACAGACGATGCATCGATACACTACTGGCTCTT-TTGAAACATCGAATG
1 TGTACTGATGCACAGACAATGCATCGATACACTACAGG-TCTTATTGAAACATCAAATG
32782 TAATTAGTAT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
65 47 0.94
66 3 0.06
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (65 bp):
TGTACTGATGCACAGACAATGCATCGATACACTACAGGTCTTATTGAAACATCAAATGCACTTTA
Found at i:35564 original size:34 final size:34
Alignment explanation
Indices: 35517--35601 Score: 143
Period size: 34 Copynumber: 2.5 Consensus size: 34
35507 CCCGAACCCA
* *
35517 AAAATATTTTATATATAATTAATATAAAATATAT
1 AAAATATTATATATATAATTAATATAAAAAATAT
*
35551 AAAATATTATATATATGATTAATATAAAAAATAT
1 AAAATATTATATATATAATTAATATAAAAAATAT
35585 AAAATATTATATATATA
1 AAAATATTATATATATA
35602 TATATATATA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 47 1.00
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.41
Consensus pattern (34 bp):
AAAATATTATATATATAATTAATATAAAAAATAT
Found at i:39088 original size:2 final size:2
Alignment explanation
Indices: 39083--39107 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
39073 TTTTTGACTT
39083 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
39108 TATTCTTTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:39530 original size:158 final size:155
Alignment explanation
Indices: 39368--39740 Score: 408
Period size: 158 Copynumber: 2.4 Consensus size: 155
39358 AGTTACATTG
* * * *
39368 GTATTCTATTGTAGTATATAAGTATGTGGTTCAAATTTGGTAAAAAATGACTTAAAATAAATCAC
1 GTATTCTATTGTGGTTTAGAAGCATGT-GTTCAAATTTGGTAAAAAATGACTTAAAATAAATCAC
* * * *
39433 AAATTGAAGGAATAAAAAGATTATGAAAAATTGAAGGACTAAATTGAAATATAAAAAAATTAAAA
65 AAATTGAAGAAATAAAAAGATAATGAAAAATTAAAGGACTAAATTGAAAAAT-AAAAAATTAAAA
39498 AAAAAAAAGAGGAAT-TGAAAGTACACAT
129 AAAAAAAAGAGG-ATGTGAAAGTA-ACAT
* * * ** * *
39526 GTATTCTACTATGGTTTAGGAGCATGTGTCTCAAATTTGGTAAAAACGGACTTAAAATAAATGAT
1 GTATTCTATTGTGGTTTAGAAGCATGTGT-TCAAATTTGGTAAAAAATGACTTAAAATAAATCAC
* * * * * **
39591 GAATTGAAGAAATTAGAATATAATGAAAAATTAAAGGACTAAATTGAAAAATAAAAAATTTATTA
65 AAATTGAAGAAATAAAAAGATAATGAAAAATTAAAGGACTAAATTGAAAAATAAAAAATTAAAAA
** *
39656 TCAAAAAGAGGATGTGAAAGTATCAT
130 AAAAAAAGAGGATGTGAAAGTAACAT
* * *
39682 GTATTCTACTATG-GGTTTAGAAGCATTTTCTTCAAATTTGGTAAAAATTGACTTAAAAT
1 GTATTCTA-T-TGTGGTTTAGAAGCA-TGTGTTCAAATTTGGTAAAAAATGACTTAAAAT
39741 GGAGGAGGAA
Statistics
Matches: 178, Mismatches: 32, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
156 13 0.07
157 66 0.37
158 99 0.56
ACGTcount: A:0.47, C:0.06, G:0.16, T:0.30
Consensus pattern (155 bp):
GTATTCTATTGTGGTTTAGAAGCATGTGTTCAAATTTGGTAAAAAATGACTTAAAATAAATCACA
AATTGAAGAAATAAAAAGATAATGAAAAATTAAAGGACTAAATTGAAAAATAAAAAATTAAAAAA
AAAAAAGAGGATGTGAAAGTAACAT
Found at i:39737 original size:157 final size:159
Alignment explanation
Indices: 39397--39762 Score: 454
Period size: 157 Copynumber: 2.3 Consensus size: 159
39387 AAGTATGTGG
* * * *
39397 TTCAAATTTGGTAAAAAATGACTTAAAATAAATCACAAATTGAAGGAATAAAAAGATTATGAAAA
1 TTCAAATTTGGTAAAAAATGACTTAAAATAAATGACGAATTGAAGAAATAAAAAGATAATGAAAA
* *
39462 ATTGAAGGACTAAATTGAAATATAAAAAAATTAAAAAAAAAAAAGAGGAATTGAAAGTACACATG
66 ATTAAAGGACTAAATTGAAAAATAAAAAAATTAAAAAAAAAAAAGAGGAATTGAAAGTACACATG
*
39527 TATTCTACTATGGTTTAGGAGCATGTGTC
131 TATTCTACTATGGTTTAGAAGCATGTGTC
** * * * *
39556 -TCAAATTTGGTAAAAACGGACTTAAAATAAATGATGAATTGAAGAAATTAGAATATAATGAAAA
1 TTCAAATTTGGTAAAAAATGACTTAAAATAAATGACGAATTGAAGAAATAAAAAGATAATGAAAA
* ** ** *
39620 ATTAAAGGACTAAATTGAAAAAT-AAAAAATTTATTATCAAAAAGAGG-ATGTGAAAGTA-TCAT
66 ATTAAAGGACTAAATTGAAAAATAAAAAAATTAAAAAAAAAAAAGAGGAAT-TGAAAGTACACAT
*
39682 GTATTCTACTATGGGTTTAGAAGCAT-TTTC
130 GTATTCTACTAT-GGTTTAGAAGCATGTGTC
* ** * *
39712 TTCAAATTTGGTAAAAATTGACTTAAAATGGAGGAGGAATTGAAGAAATAA
1 TTCAAATTTGGTAAAAAATGACTTAAAATAAATGACGAATTGAAGAAATAA
39763 TGAAATCATG
Statistics
Matches: 177, Mismatches: 27, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
156 20 0.11
157 82 0.46
158 75 0.42
ACGTcount: A:0.49, C:0.06, G:0.17, T:0.28
Consensus pattern (159 bp):
TTCAAATTTGGTAAAAAATGACTTAAAATAAATGACGAATTGAAGAAATAAAAAGATAATGAAAA
ATTAAAGGACTAAATTGAAAAATAAAAAAATTAAAAAAAAAAAAGAGGAATTGAAAGTACACATG
TATTCTACTATGGTTTAGAAGCATGTGTC
Found at i:44109 original size:24 final size:24
Alignment explanation
Indices: 44077--44135 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
44067 CAGTCGAAAC
* * *
44077 TGCCGCGTAGAATTTTCACCGAAG
1 TGCCACGTAGAATATGCACCGAAG
44101 TGCCACGTAGAATATGCACCGAAG
1 TGCCACGTAGAATATGCACCGAAG
* *
44125 TGACACATAGA
1 TGCCACGTAGA
44136 TTTGTCTCAG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.20
Consensus pattern (24 bp):
TGCCACGTAGAATATGCACCGAAG
Found at i:50892 original size:24 final size:24
Alignment explanation
Indices: 50860--50944 Score: 77
Period size: 24 Copynumber: 3.6 Consensus size: 24
50850 CAATCGAAAT
*
50860 TGCCGCGTAGAATTTACACCGAAG
1 TGCCACGTAGAATTTACACCGAAG
* * *
50884 TGCCACGTAGAATATGCACTGAAG
1 TGCCACGTAGAATTTACACCGAAG
*
50908 TGCCACATAG-ATTTATC-CCGAA-
1 TGCCACGTAGAATTTA-CACCGAAG
*
50930 TGACCGCGTAGAATT
1 TG-CCACGTAGAATT
50945 GTCCCGAATG
Statistics
Matches: 48, Mismatches: 10, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
22 2 0.04
23 13 0.27
24 33 0.69
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.24
Consensus pattern (24 bp):
TGCCACGTAGAATTTACACCGAAG
Found at i:50941 original size:23 final size:23
Alignment explanation
Indices: 50915--50959 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
50905 AAGTGCCACA
*
50915 TAGATTTATCCCGAATGACCGCG
1 TAGAATTATCCCGAATGACCGCG
*
50938 TAGAATTGTCCCGAATGACCGC
1 TAGAATTATCCCGAATGACCGC
50960 ATAAAACCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (23 bp):
TAGAATTATCCCGAATGACCGCG
Found at i:53869 original size:37 final size:36
Alignment explanation
Indices: 53779--53883 Score: 120
Period size: 37 Copynumber: 2.8 Consensus size: 36
53769 CATTTTCGTC
* *
53779 CTACTAGGATTCAAACTCCTAAAAATAGAATATAATT
1 CTACTA-GATTCAAACTCCTAAAAATAGGATAGAATT
* * *
53816 TTGCTAGAATTCAAACTCCTAAAAATAGGATAGAGTT
1 CTACTAG-ATTCAAACTCCTAAAAATAGGATAGAATT
* *
53853 CTACTATGATTTAAACTCCTAAAGATAGGAT
1 CTACTA-GATTCAAACTCCTAAAAATAGGAT
53884 CCACAAGCAC
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
36 1 0.02
37 55 0.96
38 1 0.02
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.30
Consensus pattern (36 bp):
CTACTAGATTCAAACTCCTAAAAATAGGATAGAATT
Found at i:57849 original size:46 final size:46
Alignment explanation
Indices: 57799--57933 Score: 211
Period size: 46 Copynumber: 3.0 Consensus size: 46
57789 GCGAAGATCC
57799 AATCAAGAACAAAAAAGCAAAGAAGCAAAAAACAAATAAAAAAGAG
1 AATCAAGAACAAAAAAGCAAAGAAGCAAAAAACAAATAAAAAAGAG
*
57845 AATCAAGAACAAAAAAGCAAATAAGCAAAAAACAAATAAAAAAGAG
1 AATCAAGAACAAAAAAGCAAAGAAGCAAAAAACAAATAAAAAAGAG
* * *
57891 AATCAAGAAC--AAAAGAAAAGAAGCAAAAATCAAAAGAAAAAAG
1 AATCAAGAACAAAAAAGCAAAGAAGCAAAAAAC-AAATAAAAAAG
57934 GACAAAAAGC
Statistics
Matches: 83, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
44 18 0.22
45 10 0.12
46 55 0.66
ACGTcount: A:0.72, C:0.10, G:0.13, T:0.05
Consensus pattern (46 bp):
AATCAAGAACAAAAAAGCAAAGAAGCAAAAAACAAATAAAAAAGAG
Found at i:57901 original size:23 final size:22
Alignment explanation
Indices: 57799--57911 Score: 86
Period size: 23 Copynumber: 5.0 Consensus size: 22
57789 GCGAAGATCC
*
57799 AATCAAGAACAAAAAAGCAA-AG
1 AATCAAGAACAAAAAA-AAAGAG
* *
57821 AAGCAAAAAACAAATAAAAAAGAG
1 AATC-AAGAACAAA-AAAAAAGAG
* *
57845 AATCAAGAACAAAAAAGCAA-AT
1 AATCAAGAACAAAAAA-AAAGAG
* *
57867 AAGCAAAAAACAAATAAAAAAGAG
1 AATC-AAGAACAAA-AAAAAAGAG
*
57891 AATCAAGAACAAAAGAAAAGA
1 AATCAAGAACAAAAAAAAAGA
57912 AGCAAAAATC
Statistics
Matches: 70, Mismatches: 14, Indels: 14
0.71 0.14 0.14
Matches are distributed among these distances:
22 17 0.24
23 38 0.54
24 15 0.21
ACGTcount: A:0.72, C:0.11, G:0.12, T:0.05
Consensus pattern (22 bp):
AATCAAGAACAAAAAAAAAGAG
Found at i:58609 original size:22 final size:22
Alignment explanation
Indices: 58543--58612 Score: 131
Period size: 22 Copynumber: 3.2 Consensus size: 22
58533 CATCAAATCG
58543 TTGAGCATCAAATGCCAAACCT
1 TTGAGCATCAAATGCCAAACCT
*
58565 ATGAGCATCAAATGCCAAACCT
1 TTGAGCATCAAATGCCAAACCT
58587 TTGAGCATCAAATGCCAAACCT
1 TTGAGCATCAAATGCCAAACCT
58609 TTGA
1 TTGA
58613 CCAAACATAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 46 1.00
ACGTcount: A:0.37, C:0.26, G:0.14, T:0.23
Consensus pattern (22 bp):
TTGAGCATCAAATGCCAAACCT
Found at i:59546 original size:106 final size:106
Alignment explanation
Indices: 59358--60611 Score: 1896
Period size: 106 Copynumber: 11.9 Consensus size: 106
59348 TCGAGAGTAG
* * * *
59358 AGTTCAACTTCACGACGAAGGGACTGCTGGTTGTCAATAAACAAATTCCTAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAAT
*
59423 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
66 TTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCA
* *
59464 AGTTCAACTTCACAACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAAT
* *
59529 TTTAACTTCACAACGAAGGATATTGGACTCCAGAAAACGCA
66 TTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCA
* *
59570 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAAT
* * *
59635 TTCAACTTCACAGCGTAGGATATTGGACTCAAGACAACGCA
66 TTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCA
* * *
59676 AGTTCAACTTCACGACGAAGGGACCGCTAGTTGTCAATAAACAACTTCCTAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAAT
* *
59741 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACTCA
66 TTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCA
* *
59782 AGTTCAACTTCACGATGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAAT
*
59847 TTCAACTTCACAATGAAGGATATTGGACTCCAGACAACGCA
66 TTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCA
*
59888 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAAT
*
59953 TTCAACTTCACAACGAAGGATATTGGACTCAAGACAACGCA
66 TTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCA
* *
59994 AGTTCAACTTCACGACGAAGGGACCGTTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAAT
*
60059 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
66 TTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCA
* *
60100 AGTTCAACTTCACAACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAAT
60165 TTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCA
66 TTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCA
* * * *
60206 AGTTCAACTTCACGACGAAGGGA-TGCTGGTTGTAAACAAACAATTTTCCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAAT
*
60270 TTCAACTTCACAACGAAGGATATTGGACTCAAGACAACGCA
66 TTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCA
* *
60311 AGTTCAACTTCATGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAAT
* * * * *
60376 TTCAACTTCTCAGCGAAGGATCTTAGAC-CCAAGACAACACA
66 TTCAACTTCACAACGAAGGATATTGGACTCC-AGACAACGCA
* * * * * *
60417 AGCTCAACTTCACGAAGAAAGGG-CGGCTGATTGTCAAC-AA-AA-TT-TC-A-TTCAGAGTCAA
1 AGTTCAACTTCACGACG-AAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAA
* * *
60475 TTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACA
65 TTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCA
* * * * ** *
60517 AGTTCAACTTCACAATGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCGGTTCCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAAT
* *
60582 TTCAACTTCACGACGGAGGATATTGGACTC
66 TTCAACTTCACAACGAAGGATATTGGACTC
60612 GGAACAATGC
Statistics
Matches: 1048, Mismatches: 89, Indels: 22
0.90 0.08 0.02
Matches are distributed among these distances:
99 5 0.00
100 74 0.07
101 4 0.00
102 3 0.00
103 4 0.00
104 3 0.00
105 101 0.10
106 849 0.81
107 5 0.00
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (106 bp):
AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAAT
TTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCA
Found at i:64792 original size:41 final size:39
Alignment explanation
Indices: 64702--64816 Score: 126
Period size: 41 Copynumber: 2.9 Consensus size: 39
64692 TTTAAAATGT
*
64702 TTTTTTGAAAA-ATATAATATATAGTTTTAAGAAAACGG
1 TTTTTTGAAAATATATAATATATAGTTTTAAAAAAACGG
**
64740 TTTTTTGAAAATATATAATATATTTTTTTTAAAAAAAATCGG
1 TTTTTTGAAAATATATAATATA-TAGTTTT-AAAAAAA-CGG
* *
64782 -TTTTTGAAAATATATATATTATATAATTTTGAAAA
1 TTTTTTGAAAATATATA-A-TATATAGTTTTAAAAA
64817 CAATTTTTAA
Statistics
Matches: 65, Mismatches: 6, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
38 11 0.17
39 10 0.15
40 5 0.08
41 26 0.40
42 9 0.14
43 4 0.06
ACGTcount: A:0.44, C:0.02, G:0.09, T:0.45
Consensus pattern (39 bp):
TTTTTTGAAAATATATAATATATAGTTTTAAAAAAACGG
Found at i:64845 original size:46 final size:45
Alignment explanation
Indices: 64794--64888 Score: 145
Period size: 46 Copynumber: 2.1 Consensus size: 45
64784 TTTGAAAATA
64794 TATATATTATATAATTTTGAAAACAATTTTTAAAAATATTATATAT
1 TATATATTATATAATTTTGAAAACAATTTTTAAAAATA-TATATAT
* ** *
64840 TATATATTATATAGTTTTGAAAATGATTTTTGAAAATATATATAT
1 TATATATTATATAATTTTGAAAACAATTTTTAAAAATATATATAT
64885 TATA
1 TATA
64889 GTTTTGAAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
45 11 0.24
46 34 0.76
ACGTcount: A:0.45, C:0.01, G:0.05, T:0.48
Consensus pattern (45 bp):
TATATATTATATAATTTTGAAAACAATTTTTAAAAATATATATAT
Found at i:64889 original size:36 final size:36
Alignment explanation
Indices: 64840--65057 Score: 203
Period size: 36 Copynumber: 6.2 Consensus size: 36
64830 TATTATATAT
64840 TATATAT-TATATAGTTTTGAAAATGATTTTTGAAAA
1 TATATATATATATA-TTTTGAAAATGATTTTTGAAAA
64876 TATATATAT-TATAGTTTTGAAAATGATTTTTG--AA
1 TATATATATATATA-TTTTGAAAATGATTTTTGAAAA
* *
64910 TATATATATATATA-TAT-AATATG-TTTTTGAAAA
1 TATATATATATATATTTTGAAAATGATTTTTGAAAA
* *
64943 TATATATATAATATATTTTGAAAA-CATTTTTTAAAAA
1 TATATATAT-ATATATTTTGAAAATGA-TTTTTGAAAA
* *
64980 TATATATAATATATAGTTTTTGAAAACG-TTTTGGAAAA
1 TATATAT-ATATATA--TTTTGAAAATGATTTTTGAAAA
65018 TATA-ATATATA-A-TTTGAAAAAT-ATTTTTTGAAAA
1 TATATATATATATATTTTG-AAAATGA-TTTTTGAAAA
65052 T-TATAT
1 TATATAT
65058 TAGTTTTTAT
Statistics
Matches: 154, Mismatches: 11, Indels: 36
0.77 0.05 0.18
Matches are distributed among these distances:
31 6 0.04
32 9 0.06
33 19 0.12
34 28 0.18
35 7 0.05
36 38 0.25
37 24 0.16
38 14 0.09
39 9 0.06
ACGTcount: A:0.44, C:0.01, G:0.08, T:0.47
Consensus pattern (36 bp):
TATATATATATATATTTTGAAAATGATTTTTGAAAA
Found at i:64905 original size:82 final size:82
Alignment explanation
Indices: 64782--64943 Score: 222
Period size: 82 Copynumber: 2.0 Consensus size: 82
64772 AAAAAATCGG
64782 TTTTTGAAAATATATATATTATATAATTTTGAAAACAATTTTTAAAAATATTATATATTATATAT
1 TTTTTGAAAATATATATATTATATAATTTTGAAAACAATTTTTAAAAATA-TATATA-TATATAT
*
64847 TATATAG-TTTTGAAAATGA
64 AATAT-GTTTTTGAAAATGA
* ** * *
64866 TTTTTGAAAATATATATA-T-TATAGTTTTGAAAATGATTTTTGAATATATATATATATATATAA
1 TTTTTGAAAATATATATATTATATAATTTTGAAAACAATTTTTAAAAATATATATATATATATAA
64929 TATGTTTTTGAAAAT
66 TATGTTTTTGAAAAT
64944 ATATATATAA
Statistics
Matches: 71, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
79 1 0.01
80 21 0.30
81 6 0.08
82 24 0.34
83 1 0.01
84 18 0.25
ACGTcount: A:0.43, C:0.01, G:0.07, T:0.49
Consensus pattern (82 bp):
TTTTTGAAAATATATATATTATATAATTTTGAAAACAATTTTTAAAAATATATATATATATATAA
TATGTTTTTGAAAATGA
Found at i:64951 original size:25 final size:24
Alignment explanation
Indices: 64917--64966 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 24
64907 GAATATATAT
*
64917 ATATATATATAATATGTTTTTGAAA
1 ATATATATATAATAT-ATTTTGAAA
64942 ATATATATATAATATATTTTGAAA
1 ATATATATATAATATATTTTGAAA
64966 A
1 A
64967 CATTTTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 9 0.38
25 15 0.62
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.46
Consensus pattern (24 bp):
ATATATATATAATATATTTTGAAA
Found at i:65001 original size:39 final size:38
Alignment explanation
Indices: 64933--65030 Score: 110
Period size: 37 Copynumber: 2.5 Consensus size: 38
64923 ATATAATATG
*
64933 TTTTTGAAAATATATAT-ATAATATATTTTGAAAACAT
1 TTTTTAAAAATATATATAATAATATATTTTGAAAACAT
*
64970 TTTTTAAAAATATATATAAT-ATATAGTTTTTGAAAACGT
1 TTTTTAAAAATATATATAATAATATA--TTTTGAAAACAT
**
65009 TTTGGAAAATATAATATATAAT
1 TTTTTAAAA-AT-ATATATAAT
65031 TTGAAAAATA
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
37 21 0.40
38 2 0.04
39 18 0.35
40 2 0.04
41 9 0.17
ACGTcount: A:0.46, C:0.02, G:0.07, T:0.45
Consensus pattern (38 bp):
TTTTTAAAAATATATATAATAATATATTTTGAAAACAT
Found at i:65073 original size:17 final size:16
Alignment explanation
Indices: 65051--65089 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
65041 TTTTTTGAAA
65051 ATTATATTAGTTTTTAT
1 ATTATATTAGTTTTT-T
65068 ATTATA-TAGTTTTTT
1 ATTATATTAGTTTTTT
65083 ATT-TATT
1 ATTATATT
65090 TATTTATTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 2 0.10
15 5 0.24
16 8 0.38
17 6 0.29
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (16 bp):
ATTATATTAGTTTTTT
Found at i:65088 original size:16 final size:16
Alignment explanation
Indices: 65052--65102 Score: 52
Period size: 16 Copynumber: 3.1 Consensus size: 16
65042 TTTTTGAAAA
65052 TTATATTAG-TTTTTAT
1 TTATA-TAGTTTTTTAT
65068 ATTATATAGTTTTTTAT
1 -TTATATAGTTTTTTAT
*
65085 TTATTTA-TTTATTTAT
1 TTATATAGTTT-TTTAT
65101 TT
1 TT
65103 TATGTATTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
15 3 0.10
16 16 0.52
17 12 0.39
ACGTcount: A:0.25, C:0.00, G:0.04, T:0.71
Consensus pattern (16 bp):
TTATATAGTTTTTTAT
Found at i:65089 original size:4 final size:4
Alignment explanation
Indices: 65080--65115 Score: 54
Period size: 4 Copynumber: 8.8 Consensus size: 4
65070 TATATAGTTT
*
65080 TTTA TTTA TTTA TTTA TTTA TTTTA TGTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA TTTA TTT
65116 TGTTTGCTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 25 0.86
5 4 0.14
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:65110 original size:13 final size:13
Alignment explanation
Indices: 65082--65116 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
65072 TATAGTTTTT
*
65082 TATTTA-TTTATT
1 TATTTATTTTATG
65094 TATTTATTTTATG
1 TATTTATTTTATG
65107 TATTTATTTT
1 TATTTATTTT
65117 GTTTGCTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (13 bp):
TATTTATTTTATG
Found at i:65129 original size:15 final size:16
Alignment explanation
Indices: 65109--65142 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
65099 ATTTTATGTA
65109 TTTA-TTTTGTTTGCT
1 TTTATTTTTGTTTGCT
*
65124 TTTATTTTTGTTTTCT
1 TTTATTTTTGTTTGCT
65140 TTT
1 TTT
65143 TCAGGCTCGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.06, C:0.06, G:0.09, T:0.79
Consensus pattern (16 bp):
TTTATTTTTGTTTGCT
Found at i:65515 original size:23 final size:23
Alignment explanation
Indices: 65484--65543 Score: 93
Period size: 23 Copynumber: 2.6 Consensus size: 23
65474 GATACACGCC
* *
65484 AAACGGAAACATCTCGATACCCA
1 AAACAGAAACATATCGATACCCA
*
65507 AAACAGAAACATATCGGTACCCA
1 AAACAGAAACATATCGATACCCA
65530 AAACAGAAACATAT
1 AAACAGAAACATAT
65544 TGGAACAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.50, C:0.25, G:0.12, T:0.13
Consensus pattern (23 bp):
AAACAGAAACATATCGATACCCA
Found at i:66558 original size:6 final size:6
Alignment explanation
Indices: 66497--66560 Score: 51
Period size: 6 Copynumber: 10.5 Consensus size: 6
66487 AATTTAACTT
* * *
66497 TTTTTA -TTTTC TTTTTA TTTGTTA -TTTCA TTTTTA TTTTAATA TTCTTA
1 TTTTTA TTTTTA TTTTTA TTT-TTA TTTTTA TTTTTA TTTT--TA TTTTTA
*
66546 ATTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTT
66561 ATTTATTTAT
Statistics
Matches: 45, Mismatches: 8, Indels: 10
0.71 0.13 0.16
Matches are distributed among these distances:
5 6 0.13
6 31 0.69
7 3 0.07
8 5 0.11
ACGTcount: A:0.19, C:0.05, G:0.02, T:0.75
Consensus pattern (6 bp):
TTTTTA
Found at i:66563 original size:4 final size:4
Alignment explanation
Indices: 66554--66590 Score: 51
Period size: 4 Copynumber: 9.8 Consensus size: 4
66544 TAATTTTATT
*
66554 TTTA TTTA TTTA TTTA TTTA TTTA --TA TTTA TATA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
66591 CACTATTTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
2 2 0.07
4 27 0.93
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (4 bp):
TTTA
Found at i:66569 original size:18 final size:18
Alignment explanation
Indices: 66497--66590 Score: 54
Period size: 18 Copynumber: 5.2 Consensus size: 18
66487 AATTTAACTT
66497 TTTTTATTT-TCTT-TTTA
1 TTTTTATTTAT-TTATTTA
66514 TTTGTTATTTCA-TT-TTTA
1 TTT-TTATTT-ATTTATTTA
* * *
66532 TTTTAATATTCTTAATTTTA
1 TTTTTAT-TTATTTA-TTTA
66552 TTTTTATTTATTTATTTA
1 TTTTTATTTATTTATTTA
* *
66570 TTTATT-TATATTTATATA
1 TTT-TTATTTATTTATTTA
66588 TTT
1 TTT
66591 CACTATTTAA
Statistics
Matches: 61, Mismatches: 8, Indels: 15
0.73 0.10 0.18
Matches are distributed among these distances:
17 6 0.10
18 38 0.62
19 7 0.11
20 10 0.16
ACGTcount: A:0.22, C:0.03, G:0.01, T:0.73
Consensus pattern (18 bp):
TTTTTATTTATTTATTTA
Found at i:66597 original size:22 final size:22
Alignment explanation
Indices: 66550--66607 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
66540 TTCTTAATTT
* * *
66550 TATTTTTATTTATTTATTTATT
1 TATTTATATTTATATATTTATC
66572 TATTTATATTTATATATTTCA-C
1 TATTTATATTTATATATTT-ATC
66594 TATTTAATATTTAT
1 TATTT-ATATTTAT
66608 CTTGACTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
22 22 0.71
23 9 0.29
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.67
Consensus pattern (22 bp):
TATTTATATTTATATATTTATC
Found at i:67372 original size:3 final size:3
Alignment explanation
Indices: 67362--67402 Score: 59
Period size: 3 Copynumber: 14.0 Consensus size: 3
67352 AAAAAATTAT
67362 TAA T-A TAA TAA TAA TAA TAA TAA TAA TAA TAA -AA TAGA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA
67403 CAAAGATAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
2 4 0.11
3 28 0.80
4 3 0.09
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:68691 original size:3 final size:3
Alignment explanation
Indices: 68683--68721 Score: 51
Period size: 3 Copynumber: 12.7 Consensus size: 3
68673 CATGCAAAAG
* *
68683 TAA TAA TAA AAA TAT TAA TAA TAA TAA TAA TAAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TA
68722 TTTTTTTAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
3 28 0.90
4 3 0.10
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:74181 original size:3 final size:3
Alignment explanation
Indices: 74173--74219 Score: 53
Period size: 3 Copynumber: 16.3 Consensus size: 3
74163 ATTTATTTAT
* * *
74173 TTA TTA TTA TTA GTA TTA TTA TCA TTA TTA TT- TAA TT- TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
74219 T
1 T
74220 CACTTTATAG
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
2 3 0.08
3 33 0.92
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:75820 original size:5 final size:5
Alignment explanation
Indices: 75776--75848 Score: 53
Period size: 5 Copynumber: 14.6 Consensus size: 5
75766 TTGCTTTACA
* *
75776 TTTA- TTTAT TTTGAT TTT-T TTTACT TCT-T TTCATT TTTAT TTTAT
1 TTTAT TTTAT TTT-AT TTTAT TTTA-T TTTAT TTTA-T TTTAT TTTAT
* * *
75821 TTTGT TTTAT TTTAG TTTAT TGTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
75849 TGTGAAAAAT
Statistics
Matches: 53, Mismatches: 10, Indels: 11
0.72 0.14 0.15
Matches are distributed among these distances:
4 10 0.19
5 31 0.58
6 12 0.23
ACGTcount: A:0.15, C:0.04, G:0.05, T:0.75
Consensus pattern (5 bp):
TTTAT
Found at i:84456 original size:15 final size:16
Alignment explanation
Indices: 84438--84467 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
84428 ATCTTTTAAT
84438 TTTAAATAAT-TTATA
1 TTTAAATAATCTTATA
84453 TTTAAATAATCTTAT
1 TTTAAATAATCTTAT
84468 TCCGAAGAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.53
Consensus pattern (16 bp):
TTTAAATAATCTTATA
Done.