Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003027.1 Hibiscus syriacus cultivar Beakdansim tig00006298_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78911

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3769--3841
35
2.1
36
92
2
121
15
17
20
46
1.84
14640--14665
9
2.9
9
100
0
52
69
0
0
30
0.89
15246--15286
18
2.2
18
82
4
55
56
2
0
41
1.13
17938--18095
37
4.2
39
79
8
166
44
5
3
46
1.41
17938--18080
75
1.9
76
84
7
193
44
3
3
48
1.36
19120--19149
2
15.0
2
100
0
60
0
50
0
50
1.00
19149--19176
2
14.0
2
100
0
56
50
50
0
0
1.00
24413--24438
2
13.0
2
100
0
52
0
50
0
50
1.00
24438--24470
2
16.5
2
100
0
66
48
0
0
51
1.00
28222--28313
44
2.1
44
95
0
166
41
16
11
30
1.84
28819--28870
2
26.0
2
100
0
104
50
0
0
50
1.00
30929--31635
165
4.2
166
86
6
918
30
15
15
38
1.89
31363--31396
15
2.3
15
100
0
68
23
5
26
44
1.76
31198--31562
181
2.0
180
91
1
588
29
15
16
38
1.90
31939--31996
29
2.0
29
86
0
80
20
18
18
41
1.91
33110--33169
20
2.9
21
90
7
95
30
25
26
18
1.98
33203--33247
22
2.0
22
86
4
63
28
31
26
13
1.94
34543--34760
103
2.1
103
93
0
382
26
13
22
37
1.91
34780--34847
23
3.0
23
84
0
82
23
25
25
26
2.00
38036--38079
8
4.7
9
79
20
54
2
11
0
86
0.66
42912--42952
17
2.4
17
100
0
82
14
31
0
53
1.41
43808--43841
3
11.3
3
100
0
68
64
0
0
35
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43840--43880
3
14.0
3
94
5
75
34
0
0
65
0.93
43958--44021
29
2.1
31
82
5
78
43
6
17
32
1.74
46652--46760
24
4.5
24
74
4
85
53
14
11
20
1.72
48796--48865
30
2.4
29
92
2
113
32
21
24
21
1.98
50575--50620
12
3.5
13
77
11
58
52
0
19
28
1.47
50565--50621
26
2.2
26
96
3
107
52
0
21
26
1.47
50565--50606
12
3.4
12
80
6
57
54
0
19
26
1.44
57040--57100
22
3.0
20
77
15
54
34
1
3
60
1.23
58579--58629
20
2.5
20
96
0
93
25
19
29
25
1.99
60386--60437
20
2.5
20
87
9
70
1
25
1
71
1.07
60383--60441
14
4.6
13
76
18
61
1
25
1
71
1.05
71012--71067
21
2.7
21
77
0
58
21
17
33
26
1.96
72751--72815
28
2.3
29
76
12
73
55
1
4
38
1.30
73972--74005
17
2.0
17
88
0
50
44
2
2
50
1.32
76049--76081
15
2.3
14
94
5
57
30
36
12
21
1.90

Tables:   1

The End!