genome.fa.s3028.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003028.1 Hibiscus syriacus cultivar Beakdansim tig00006301_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48724

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389--420	9	3.8	9	88	12	50	56	0	0	43	0.99
389--491	2	51.5	2	71	11	68	44	4	4	45	1.46
866--988	58	2.1	57	81	11	144	47	4	11	37	1.59
866--1015	57	2.6	57	77	12	148	48	4	11	36	1.60
1334--1381	20	2.4	20	96	0	87	22	43	20	12	1.86
4968--5006	16	2.4	16	91	0	60	33	17	28	20	1.96
9880--9929	23	2.2	23	85	0	64	40	8	24	28	1.83
9958--10005	23	2.1	23	84	7	62	37	10	18	33	1.85
9845--10005	87	1.9	87	93	0	277	40	11	16	30	1.85
10027--10479	198	2.3	200	83	4	542	32	15	13	38	1.87
10095--10506	199	2.1	199	80	8	446	32	16	13	37	1.88
11634--12172	182	3.0	182	90	1	830	27	17	12	42	1.85
15047--15129	16	5.0	16	70	18	62	49	2	0	48	1.14
15580--15627	23	2.1	23	88	0	69	35	12	18	33	1.89
16004--16055	23	2.3	22	90	6	77	44	19	1	34	1.62
16014--16076	23	2.7	23	90	0	90	38	19	6	36	1.77
16476--16601	39	3.2	39	97	0	234	17	13	20	48	1.81
17119--17169	25	2.0	25	92	0	84	39	19	7	33	1.81
17434--17485	23	2.3	22	90	6	77	44	19	1	34	1.62
17444--17506	23	2.7	23	90	0	90	38	19	6	36	1.77
17874--17936	23	2.7	23	90	0	90	38	19	6	36	1.77
17203--18462	430	2.9	431	97	1	2374	39	12	8	39	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18288--18341	23	2.5	20	75	18	54	42	20	1	35	1.63
18303--18365	23	2.7	23	90	0	90	38	17	7	36	1.79
21490--21532	22	1.9	23	90	4	70	44	13	11	30	1.80
21528--22222	183	3.8	183	96	0	1241	33	16	14	36	1.89
23422--23493	3	24.0	3	78	0	72	25	34	5	34	1.79
24926--26094	198	5.9	198	98	0	2234	30	15	16	36	1.91
26213--26261	19	2.6	19	93	0	80	57	10	2	30	1.43
28052--28117	33	2.0	33	90	0	105	22	48	0	28	1.51
28151--28215	21	3.1	21	80	6	69	15	29	15	40	1.88
30447--30494	20	2.4	19	90	10	78	22	16	10	50	1.76
30615--30660	20	2.3	20	89	10	76	17	17	10	54	1.70
31491--31552	24	2.4	25	81	15	72	54	0	8	37	1.30
33257--33327	32	2.3	31	81	13	83	46	0	1	52	1.09
40737--40779	16	2.8	16	92	3	70	48	0	2	48	1.14
47957--48240	144	2.0	144	92	6	483	41	10	10	38	1.74

Tables:   1

The End!