Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000303.1 Hibiscus syriacus cultivar Beakdansim tig00000562_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40922

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3517--3570
5
10.8
5
93
0
72
5
40
37
16
1.72
3568--3616
6
8.2
6
100
0
98
0
16
48
34
1.46
9454--9501
5
9.8
5
90
4
53
8
39
39
12
1.73
9499--9607
6
18.2
6
94
3
184
2
16
48
32
1.60
10911--10970
25
2.4
25
75
8
61
30
3
3
63
1.27
10941--10969
12
2.3
13
94
5
51
27
0
6
65
1.18
11002--11035
18
1.9
17
88
5
50
41
2
0
55
1.15
11491--11577
29
3.0
29
100
0
174
44
24
13
17
1.85
12700--12758
21
2.9
21
72
18
52
27
16
27
28
1.97
18881--18928
12
3.8
12
76
15
51
8
12
0
79
0.94
18877--18921
16
2.8
15
86
10
54
8
13
0
77
0.98
18886--18937
27
1.9
27
88
7
79
5
15
0
78
0.92
18877--19007
69
1.9
69
81
6
158
9
15
0
75
1.04
18881--19010
28
4.8
25
67
24
77
8
15
0
76
1.02
19637--19716
42
1.9
42
86
0
115
37
22
16
23
1.93
20393--20490
41
2.4
41
92
1
160
35
19
20
24
1.95
20393--20526
41
3.3
40
83
5
135
35
19
19
25
1.95
20426--25003
258
17.8
258
81
4
5156
35
17
13
34
1.89
19012--24958
772
7.7
774
86
5
7188
35
17
13
33
1.89
24787--24886
42
2.4
42
76
3
105
31
19
25
25
1.98
28363--28433
24
3.0
24
87
0
97
36
18
21
23
1.95
30990--31687
365
1.9
361
84
4
920
34
12
20
32
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33153--33219
22
3.0
22
91
0
107
28
19
22
29
1.98
35756--36194
54
8.2
54
90
1
614
31
16
15
37
1.89
35766--36181
215
1.9
215
89
0
634
31
16
14
37
1.89
40197--40276
39
2.0
40
97
2
153
38
15
13
32
1.86

Tables:   1

The End!