Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003030.1 Hibiscus syriacus cultivar Beakdansim tig00006308_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48575

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
477--548
29
2.4
30
81
2
92
44
1
6
47
1.38
2503--2551
3
16.7
3
95
4
91
65
0
0
34
0.93
4245--4354
31
3.5
31
94
0
193
17
20
22
39
1.93
4247--4367
62
2.0
62
90
3
190
19
20
22
37
1.95
5347--5391
23
2.0
22
87
12
65
71
2
2
24
1.09
5648--5727
7
10.6
7
76
12
54
41
1
0
57
1.07
8539--8569
16
1.9
16
93
0
53
41
29
19
9
1.83
13345--13410
3
21.3
3
77
11
62
65
0
30
4
1.13
21163--21201
14
2.7
15
92
4
62
12
30
35
20
1.90
21941--21972
17
1.9
16
93
6
55
37
31
18
12
1.88
21940--21980
16
2.5
17
84
4
57
39
29
19
12
1.88
24187--24213
2
13.5
2
100
0
54
48
0
51
0
1.00
42314--42383
31
2.3
32
83
11
85
34
20
8
37
1.83
45196--45228
2
16.5
2
100
0
66
51
0
0
48
1.00
45232--45275
18
2.5
17
85
7
52
68
4
4
22
1.27
47802--47888
26
3.5
26
69
20
78
20
22
13
42
1.88
47770--47917
47
3.2
46
86
2
217
21
22
12
43
1.86
48067--48114
25
1.9
25
100
0
96
39
22
8
29
1.83

Tables:   1

The End!