genome.fa.s3031.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003031.1 Hibiscus syriacus cultivar Beakdansim tig00006311_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114813

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
834--864	2	15.5	2	93	0	53	45	3	0	51	1.17
3715--3889	97	1.8	94	87	6	262	24	34	21	19	1.96
4056--4137	16	5.3	16	84	8	107	59	21	8	9	1.55
5121--5183	33	1.9	33	83	0	81	28	20	31	19	1.97
6649--6782	68	2.0	68	92	0	223	31	17	18	32	1.94
9262--9359	48	2.0	48	94	0	169	30	18	15	35	1.92
11435--11506	34	2.1	34	100	0	144	30	2	48	18	1.62
22834--22867	2	17.0	2	100	0	68	50	0	0	50	1.00
27991--28053	27	2.4	25	79	10	65	20	3	11	65	1.38
30665--30742	22	3.7	20	76	20	70	17	19	12	50	1.78
32103--32153	13	3.9	13	82	14	61	76	0	19	3	0.94
32104--32160	4	13.8	4	77	14	53	77	0	19	3	0.92
32116--32163	22	2.1	23	88	3	71	81	0	14	4	0.84
32103--32160	13	4.7	12	78	19	57	77	0	18	3	0.91
32849--32982	20	6.7	20	84	5	144	31	24	18	25	1.98
33537--33587	19	2.7	20	78	9	61	49	19	17	13	1.80
33577--33666	39	2.3	39	94	1	155	12	18	21	47	1.81
33577--33761	19	10.1	19	75	14	156	12	21	21	44	1.85
33577--33677	39	2.6	39	87	4	107	10	19	23	45	1.82
33649--33736	33	2.6	33	92	1	140	11	25	25	38	1.89
35761--35883	42	2.9	42	81	2	122	22	35	17	23	1.95
37240--37275	14	2.6	14	95	0	63	30	0	25	44	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37460--37584	19	7.4	18	66	24	85	15	20	19	44	1.86
37459--37584	33	3.9	31	84	10	171	15	20	19	44	1.86
37459--37583	66	1.9	66	94	0	223	15	20	20	44	1.87
39877--39901	12	2.1	12	100	0	50	0	28	0	72	0.86
40083--40128	24	1.9	24	90	0	74	30	21	19	28	1.98
41186--41223	20	1.9	20	94	0	67	39	23	21	15	1.92
41246--41319	19	4.5	16	83	16	66	13	20	18	47	1.82
41242--41309	19	3.8	19	87	12	101	13	22	17	47	1.82
41223--41337	52	2.2	52	82	0	131	19	21	20	38	1.94
43330--43396	19	3.5	19	79	4	80	37	25	22	14	1.93
43385--43442	14	3.9	14	79	16	71	48	25	17	8	1.75
43377--43447	32	2.2	33	97	2	135	47	23	19	8	1.77
43454--43549	19	5.6	17	72	21	78	11	19	22	45	1.82
43476--43533	14	3.9	14	79	16	71	8	17	25	48	1.75
43459--43549	32	2.8	33	94	3	166	10	18	23	47	1.80
43534--43588	20	2.8	19	83	8	65	16	23	23	36	1.94
44070--44114	18	2.5	18	88	0	72	13	15	44	26	1.83
45433--45475	20	2.2	20	95	0	77	53	18	18	9	1.70
45740--45783	22	2.0	22	95	0	79	18	15	45	20	1.85
45971--46039	20	3.5	20	86	4	95	27	18	26	27	1.98
46011--46088	41	1.9	41	83	0	102	24	16	19	39	1.91
46077--46125	20	2.4	20	86	3	62	20	24	16	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47966--48219	55	4.6	55	84	5	327	33	11	15	39	1.82
47961--48219	109	2.4	110	87	4	355	33	10	15	40	1.81
48224--48848	53	11.9	53	85	4	773	32	7	19	39	1.81
48224--48848	211	3.0	212	86	4	813	32	7	19	39	1.81
48915--49020	42	2.5	41	77	6	106	24	23	20	31	1.98
53337--53362	2	13.0	2	100	0	52	50	0	0	50	1.00
53826--53867	21	1.9	21	85	9	57	54	0	0	45	0.99
53887--53989	53	1.9	55	80	11	124	54	1	5	37	1.36
55181--55218	2	19.0	2	100	0	76	50	0	0	50	1.00
56914--56953	14	2.7	15	88	7	64	35	0	0	65	0.93
56952--57022	35	2.0	35	100	0	142	39	2	14	43	1.59
58347--58389	14	3.1	14	76	6	52	37	13	2	46	1.57
62714--62801	3	28.7	3	81	4	95	39	2	0	57	1.11
64850--64901	20	2.6	21	76	11	56	26	7	0	65	1.20
74935--75737	112	7.0	113	89	3	1112	38	15	18	27	1.91
74935--75737	231	3.5	226	84	7	1089	38	15	18	27	1.91
74935--75737	347	2.3	341	87	5	1136	38	15	18	27	1.91
74935--75737	114	7.0	113	88	5	1066	38	15	18	27	1.91
76145--76936	76	10.5	76	97	0	1376	21	21	21	35	1.96
77062--77152	3	29.7	3	82	4	101	39	2	0	58	1.10
79204--79255	20	2.6	21	76	11	56	26	7	0	65	1.20
89289--90092	112	7.0	113	88	4	1105	38	15	18	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90502--91293	76	10.5	76	97	0	1367	21	21	21	35	1.96
91419--91506	3	28.7	3	83	4	104	38	2	0	59	1.10
93555--93606	20	2.6	21	76	11	56	26	7	0	65	1.20
100400--100438	2	19.5	2	94	0	69	51	2	0	46	1.14
104079--104145	24	2.8	24	76	0	80	25	29	7	37	1.83
105147--105183	17	2.2	17	95	0	65	56	8	21	13	1.63
112776--113202	224	1.9	224	87	3	628	34	17	18	29	1.94

Tables:   1

The End!